ID HM007108; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HM007108; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Joydebpur virus-India [India/Kolkata/Chilli/2007] clone DE pChKolB67 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus-India [India/Kolkata/Chilli/2007] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2763 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2763 RA Chattopadhyay B., Singh A.K., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 7c47db13d4158b7ae7318720d501cc16. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Tomato leaf curl Joydebpur virus-India FT [India/Kolkata/Chilli/2007]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Kolkata/Chilli/2007" FT /mol_type="genomic DNA" FT /country="India:Kolkata" FT /collection_date="Nov-2007" FT /clone="pChKolB67" FT /db_xref="taxon:1000678" FT gene 148..504 FT /gene="AV2" FT CDS 148..504 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LCR5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LCR5" FT /protein_id="AEA76802.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKMYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 308..1078 FT /gene="AV1" FT CDS 308..1078 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LE77" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LE77" FT /protein_id="AEA76803.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTCGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1075..1479) FT /gene="AC3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LDF5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LDF5" FT /protein_id="AEA76806.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHQRPFLMNHDI FT ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN FT VFRAVDHVLWNVLAQTIYVQSSNVIKFNIY" FT gene complement(1220..1624) FT /gene="AC2" FT CDS complement(1220..1624) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LDF7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LDF7" FT /protein_id="AEA76805.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHDHGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPPAPIPNEPRHHNSPSTVQSQP FT EESVGDTQMFSNIPNLDDLTASDWSFLKGL" FT gene complement(1527..2612) FT /gene="AC1" FT CDS complement(1527..2612) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LCI6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LCI6" FT /protein_id="AEA76804.1" FT /translation="MAPPNKFRINAKNYFLTYPKCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHKNGEPHLHVLLQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYV FT EKDGDLIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPEVYVSPFSSSSFDQVPEELEEWAAENVVDAAARPLRPVSIVIEGD FT SRTGKTLWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNSALKYWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASSR" FT gene complement(2162..2455) FT /gene="AC4" FT CDS complement(2162..2455) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LCR6" FT /protein_id="AEA76807.1" FT /translation="MGNLIYTCSSNSRENSNAKITDSSTSFPHPGQHISIRTFRELRAL FT QMSRPMWKKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF" XX SQ Sequence 2763 BP; 736 A; 571 C; 648 G; 808 T; 0 other; accggatggc cgcgattttt tttctagtgg gccccaccat gcacgtgctg acaaggacaa 60 ttggaccaat gagaaacgcc gctcaaagcc ttaattgttt cgtggtcccc tatataaact 120 tggcgcccaa gtagtgcact ctttccaatg tgggatccat tagtaaacga gtttcctgaa 180 accgttcacg gttttaggtg tatgctagcc gttaaatatc ttcagctagt agaaaagatg 240 tattctccag atactctcgg ctacgatttg atccgggatt taatttcagt catcagggcc 300 agaaattatg tcgaagcgac cagcagatat aatcatttcc acgcccgcct cgaaggtacg 360 ccgccgtctc aacttcgaca gcccatattc cagccgtgct gctgccccca ttgtccgcgt 420 caccaaagca aaagcatggg cgaacaggcc catgaacagg aagcccagga tgtacaggat 480 gttcagaagc ccagatgttc ctagaggctg tgaaggccca tgtaaggtcc agtcgtttga 540 gtctagacat gatgtccaac acataggtaa agtcatgtgt gttagtgatg ttacttgtgg 600 aactgggctg acccatcgag ttggtaaaag gttttgtgtt aagtccgtct atgtactggg 660 caagatttgg atggatgaga acatcaagac taagaatcac acgaatagtg ttatgttttt 720 ccttgttaga gatcgtaggc ccgtagataa gccccaagac tttggtgagg tgtttaacat 780 gtttgacaat gagcccagta cggctaccgt aaagaacgtg catcgcgata ggtatcaggt 840 gctcaggaag tggcatgcaa ctgtgactgg tggtcaatat gcatcgaagg agcaagctct 900 cgtgaagaag tttattaggg ttaataatta tgttgtgtat aaccagcaag aggctggcaa 960 gtatgaaaac catactgaga atgcattgat gttgtacatg gcgtgtactc atgcctctaa 1020 ccctgtgtat gctactttga aaatacggat ctatttctat gattccgtaa ccaattaata 1080 aatattgaat tttattacgt ttgaactttg tacataaatt gtttgcgcta atacattcca 1140 taatacatga tcgactgctc taaatacatt gtttatacta attacagcaa aattatttaa 1200 aaactgcaac acttgggtcc taaagaccct taagaaatga ccagtccgag gctgtaaggt 1260 cgtccagatt cggaatgtta gaaaacattt gtgtatcccc aacgctttcc tcaggttgtg 1320 attgaactgt acttggactg ttatgatgtc gtggttcatt aggaatgggc gctggtggtg 1380 ctcggttatc ttgaaataca ggggatttgt tatctcccag ataaacacgc cattctcggc 1440 ttgagctgca gtgatgggtt cccctgtgcg tgaatccatg gtcgtggcag cgtaatgcta 1500 tgaagtatga acagccgcag tctaggtcaa cgcgacgacg cctggtcccc ttcttggcta 1560 gcctgtgctg cactttgatt ggaacctgag tagagtgggc cttcgagggt gatgaaggtc 1620 gcattcttta aagcccaata tttgagagcg gaattcttct cttcatccaa gtactcttta 1680 tagctggaat tgggtcctgg attgcagagg aagatagcgg gaattccacc tttaatttga 1740 actggctttc cgtattttgt atttgattgc cagtcccttt gggcccccat gaattcttta 1800 aagtgtttta gataatgggg atcaacgtca tcaatgacgt tgtaccaggc gtcattactg 1860 tagaccttag ggctaaggtc gagatgacca cacaaatagt tgtgtggacc caacgaccta 1920 gcccacaacg tcttgcccgt tcgactatca ccctctatga ctatacttac gggccttaat 1980 ggccgcgcag cggcatccac gacgttctcc gcagcccatt cttcaagttc ctcgggaact 2040 tgatcaaaag aagaggaaga aaaaggagaa acataaacct ccggtggagg tgtaaaaatc 2100 ctatctaaat tagcatttaa attatgaaac tgtaaaacat aatctttggg agctttctcc 2160 cttaaaatat tgagggccgc agctttggac cctgaattga ttgcctcggc atatgcgtcg 2220 ttggcagatt gctgacctcc tctagctgat ctgccatcga tctggaaaac tccaaaatca 2280 atgaggtctc cgtctttttc cacataggcc ttgacatctg tagagctctt agctccctga 2340 atgttcggat ggaaatgtgc tgaccgggat ggggaaacga ggtcgaagaa tctgtgattt 2400 ttgcattgga attttccctc gaattggagg agcacgtgta gatgaggttc cccatttttg 2460 tgtagttctc tgcaaaccct aataaataat ttatttactg gagtttctaa gttttgtaat 2520 tgggaaagtg cttcttcttt agtaagagag cacttgggat atgtgaggaa ataatttttg 2580 gcatttattc ggaatttatt tggaggagcc attgacttgg tcaatcggtg tctagcaaac 2640 ttggctatgc aattggtgtc tggtgtctta tttatatgta gacaccgaat ggcatatgag 2700 taattgtgga aattatttta attcaaattt caaaatgccc aaagcggcca tccgtataat 2760 att 2763 //