ID HM007106; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC HM007106; XX DT 11-APR-2012 (Rel. 112, Created) DT 27-APR-2025 (Rel. 144, Last updated, Version 2) XX DE Chilli leaf curl Kanpur virus [India/Kanpur/2008] clone pChKanB19 segment DE DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl Kanpur virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2754 RA Singh A.K., Khan A., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 18d713f47d892180c42e10398b06ec69. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Chilli leaf curl Kanpur virus" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Kanpur/Chilli/2008" FT /mol_type="genomic DNA" FT /geo_loc_name="India: Kanpur" FT /collection_date="Mar-2008" FT /clone="pChKanB19" FT /note="submitted name=Chilli leaf curl Kanpur virus FT [India/Kanpur/2008]" FT /db_xref="taxon:2050930" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /protein_id="AEA76796.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQ FT EAQDVQDVQKPRCS" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /protein_id="AEA76797.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1079..1483) FT /gene="AC3" FT CDS complement(1079..1483) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /protein_id="AEA76800.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKIIDHHHRPFMRNHDI FT ITVQVRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINN FT VIRAIDHVLWNVIAQTIHVQSSNIIKFNLY" FT gene complement(1224..1628) FT /gene="AC2" FT CDS complement(1224..1628) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /protein_id="AEA76799.1" FT /translation="MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRPPPPAIHEEPRHHNSPSTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1531..2616) FT /gene="AC1" FT CDS complement(1531..2616) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /protein_id="AEA76798.1" FT /translation="MPRTQSFCVNAKNIFLTYPKCPIPKEQMLELLQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEVYVSPFCSSSFDQVPQELEEWAAENVVSAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASSR" FT gene complement(2202..2459) FT /gene="AC4" FT CDS complement(2202..2459) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /protein_id="AEA76801.1" FT /translation="MGLCISMPSSNSKVNPNSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVGFRSMDDLLEEVNRQLMMLQQRP" XX SQ Sequence 2754 BP; 731 A; 562 C; 653 G; 808 T; 0 other; accggatggc cgcgattttt ttcgtgtggg ccccacaaca cacgtgctga caatgacatg 60 tggaccaatt aaaaatgtcc ctcatagctt aattattcaa ttttccccta tttaaacttg 120 gtccccaagt attgcacaca taccaatgtg ggatccatta gtaaacgagt tccccgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagctagtag aaaagacgta 240 ttctccagac actctcggtt acgatttaat cagggatttg atctcggtta ttagggctag 300 aaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccatatacca gccgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcc aacaggccca tgaacaggaa gcccaggatg tacaggatgt 480 acagaagccc agatgttcct aggggatgtg aaggcccgtg taaggtccag tcctttgagt 540 ccagacatga tatccagcac attggtaaag taatgtgtgt tagtgatgtt acgcgtggta 600 ctggtctgac ccacagagtt ggtaaaaggt tctgtgttaa gtctgtttat gttctgggca 660 agatttggat ggatgagaat ataaagacta agaatcatac gaatagtgtt atgttttttc 720 tggttaggga tcgtaggccc gttgataagc ctcaagattt tggtgaggtg tttaacatgt 780 ttgataatga gcctagtacg gctaccgtga agaatgtgca ccgtgatagg taccaggtgt 840 tgaggaagtg gcatgcaacc gttacaggtg gtcaatacgc atcaaaggag caggctctcg 900 tgaagaagtt tattagggtt aacaattatg ttgtgtataa ccagcaagag gctggcaagt 960 atgagaatca tagtgagaat gcgttaatgt tgtatatggc gtgtacccac gcctctaacc 1020 ctgtgtatgc tactttaaag atacggattt atttttatga ctctgtaacc aactgaaatt 1080 aataaagatt gaattttatt atgtttgaac tctgtacatg aattgtttgc gctattacat 1140 tccataatac atgatcgata gctctaatta cattgtttat actaattaca gcaaaattat 1200 ttaaaaactg caatacttgg gtcctaaata cccttaagaa atgaccagtc tgaggctgta 1260 aggtcgtcca gattcggaag gttagaaaac atttgtgtat ccccaacgct ttcctcaggt 1320 tgtgattgaa ccgtacttgg actgttatga tgtcgtggtt cctcatgaat ggccggtggt 1380 ggtggtcgat tatcttgaaa tacaggggat ttgttatctc ccagataaac acggaattct 1440 ctgcttgagc tgcagtgatg ggttcccctg tgcgtgaatc catagccgtg gcagcgtaat 1500 gcgatgaagt atgaacagcc gcagtctagg tcaacgcgac gacgcctggt ccccttcttg 1560 gctagcctgt gctgcacttt gattggaacc tgagtagagt gggccctcga gggtgatgaa 1620 ggtcgcattc tttaaagccc aatttttgag tgcggaattc ttctcttcat ccaagaactc 1680 tttatagctg gaattgggtc ctggattgca gaggaagata gcgggaattc cgcctttaat 1740 ttgaactggc ttgccgtact ttgtatttga ttgccagtcc ctttgggccc ccatgaattc 1800 cttaaagtgc tttaggtagt gcgggtcgac gtcatcaatg acgttgtacc aggcgtcatt 1860 attatagacc tttgggctaa ggtcgagatg tccacacaaa tagttgtgtg gacctagtga 1920 cctggcccac attgtcttgc ccgttctact gtcgccctct attactatac tcatgggtcg 1980 taatggccgc gcagcggcac tgacgacgtt ctcagcagcc cactcttcaa gttcttgtgg 2040 aacttgatca aaagaagaag aacaaaaagg agaaacatag acctccacag gaggtgtaaa 2100 aatcctatct aaattacatt ttaaattatg atattgaaaa ataaaatctt ttgggagttt 2160 ttcccttatt attgctaacg ccgcttcagc agaacccgca tttaaggcct ctgctgcagc 2220 atcattagct gtctgttgac ctcctctagc agatcgtcca tcgatctgaa accgacccca 2280 gtcgatgtaa tcactgtcct tctcgatgta ggacttgaca tcagagctgg acttagctcc 2340 ctggaagttt gggtggaatt gggtggcgtt attagggtga gtgacatcga aatgtctggg 2400 gtttctgaat ttggatttac ctttgaattg gatgagggca tggatatgca gagacccatc 2460 ttggtgtttt tcttgtgcca ctctgataaa taatttatca gatgggcaat ttattgactg 2520 aagaagttcg agcatttgct ctttcggaat tgggcatttg ggataagtaa ggaagatatt 2580 tttagcatta acacaaaacg actgcgttcg aggcatattg aattggggac actcaaaact 2640 ctatggaatg ggggacaccg gggacgcatt tatatggtgt ccccaaatgg caaatttgta 2700 atttgcccaa ctttaattca aattcccgtg aatagcggcc atccgtataa tatt 2754 //