ID HM007104; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HM007104; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Chilli leaf curl virus-India [India/Jodhpur/2009] clone pChJodB26 segment DE DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl virus-India [India/Jodhpur/2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2763 RA Singh A.K., George B., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 59e8653723ca9b53884c21c1f1e58741. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Chilli leaf curl virus-India FT [India/Jodhpur/2009]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Jodhpur/Chilli/2009" FT /mol_type="genomic DNA" FT /country="India:Jodhpur" FT /collection_date="Apr-2009" FT /clone="pChJodB26" FT /db_xref="taxon:1000667" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LD24" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LD24" FT /protein_id="AEA76790.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LDE9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LDE9" FT /protein_id="AEA76791.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1074..1478) FT /gene="AC3" FT CDS complement(1074..1478) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LCI4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LCI4" FT /protein_id="AEA76794.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKISEHHNRPFLRNHDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWFVLAQTIHVQSSNIIKFNLY" FT gene complement(1219..1623) FT /gene="AC2" FT CDS complement(1219..1623) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LE74" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LE74" FT /protein_id="AEA76793.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDIRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1526..2611) FT /gene="AC1" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LCR3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LCR3" FT /protein_id="AEA76792.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDQASSG" FT gene complement(2161..2460) FT /gene="AC4" FT CDS complement(2161..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LD25" FT /protein_id="AEA76795.1" FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRPMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2763 BP; 745 A; 569 C; 644 G; 805 T; 0 other; accggatggc cgcgattttt tttaccgtgg gccccaccac gcacgtgctg acaaagacat 60 gtgcaccaat taaaatcgtc cctcatagct taattatttc atggtccccc ctataaactt 120 gggctccaag tagtgcactc ctaccaatgt gggatccatt agtaaacgag tttcctgaaa 180 ccgttcacgg ttttaggtgt atgttagcag ttaaatatct gcagctacta gaaaatacat 240 attctccaga cactctgggg tacgatttaa tcagggattt gatctccgtt attagggcta 300 agaattatgt ccaagcgacc agcagatata atcatttcca cgcccgcctc gaaggtacgc 360 cgccgtctca acttcgacag cccttatgcc agccgtgctg ctgcccccac tgtccgcgtc 420 acaaaggcca gagcatgggt gaacaggccc atgaacagga agcccaggat gtacaggatg 480 tacagaagcc cagatgttcc taggggttgt gaaggcccat gtaaggtcca gtcttttgag 540 tctagacacg atgtagttca tatagggaag gttatgtgta ttagtgatgt tacccgtggt 600 actgggttaa cccatagagt aggtaagcgt ttctgtgtta agtctgtgta tgtattaggg 660 aagatatgga tggatgagaa tatcaagact aagaatcaca cgaatagtgt gatgtttttc 720 cttgtccgtg atcgtcgtcc tgttgataaa ccacaagatt ttggagaggt gttcaacatg 780 tttgacaacg agcctagcac tgccactgtg aagaatatgc atagagatcg ttatcaggtt 840 ttgaggaagt ggcacgcaac ggttaccggt ggacagtacg cgtcgaagga acaggcatta 900 gttaagaagt tcgttagggt taataattat gttgtgtata accagcaaga agctggtaaa 960 tatgagaatc atactgagaa tgcattgatg ttgtacatgg cgtgtactca cgcctctaat 1020 cccgtgtatg ctaccttaaa gatacggatc tatttctatg attcagtatc gaattaataa 1080 agattgaatt ttattatatt tgaactttgt acatgaattg tttgtgctaa tacaaaccat 1140 aatacatggt tgacagctct aagtacattg tttatactaa ttacagcaaa attatttaaa 1200 tacttataca cttgggtcct aaataccctt aagaaatgac cagtctgagg ctgtaaggtc 1260 gtccagattc ggaaggttag aaaacatttg tgtatcccca acgctttcct caggttgtga 1320 ttgaaccgta tctgcacggt gatgatgtcg tggttcctca ggaatggccg gttgtggtgc 1380 tctgatatct tgaaatacag gggatttgtt atctcccaga taaacacgga attctctgct 1440 tgagctgcag tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgcgat 1500 gaaatatgaa caaccgcagt ctaagtcaac ccgacgacgc ctggtcccct tcttggccag 1560 cctgtgctgc actttgattg gaacctgagt agagtgggcc ttcgagggtg atgaaggtcg 1620 cattctttaa agcccaattt ttgagtgcgc tatttttctc ttcatccaag aactctttat 1680 agctggaatt gggtcctgga ttgcagagga agatagcggg aattccacct ttaatttgaa 1740 ctggctttcc gtatttagtg tttgattgcc agtccctttg ggcccccatg aattccttaa 1800 agtgctttag gtagtggggg tcgacgtcat caatgacgtt gtaccaggcg tcattactgt 1860 agacctttgg gctaaggtcg agatgtccac acaaatagtt gtgtggaccc aatgacctgg 1920 cccacatagt cttccccgtc ctactatcac cctctatgac aacacttatg ggtcttaacg 1980 gccgcgcagc ggcaccgaga acattctcgg cagcccattc ctcaagttcc tcgggaactt 2040 gatcaaaaga agaagaacaa aaaggagaaa cataaacctc caagggaggt gtaaaaatcc 2100 tatctaaatt tgcatttaaa ttatgaaatt gtaaaacata atctttggga gctttctccc 2160 ttaatatatt gagggccgca gctttggacc ctgaattgat tgcctcggca tatgcgtcgt 2220 tggcagactg ctgacctcct ctagctgatc ttccatcgac ttggaaaact ccaaaatcaa 2280 tgaagtctcc gtttttttcc acataggcct tgacatctga cgagctttta gctccctgaa 2340 tgttcggatg gaaatgtgct ggcctggttg gggaaacgag gtcgaagaat ctgttgtttt 2400 ggcatttgaa tttaccttcg aattgtatga ggacgtggag atgaggttcc ccattttcat 2460 gtaattcgcg acaaaccctg atgaacaatt tattagtggg ggtgcttagg ttttgaagtt 2520 gggaaagtgc ttcttcttta gtgagggaac actgtggata tgttaagaaa taatttttag 2580 catatatttg aaaacgtttt ggaggagcca tgttgacttg gtcaatcggt actcaacaaa 2640 cttggctatg caatcggtga atggtactca atatatagtg tgagtaccaa atggcatgtt 2700 cgtaattttg aaagcaattt caaaattcaa attccgacaa aagcggccat ccgcactaat 2760 att 2763 //