ID HM007102; SV 1; circular; genomic DNA; STD; VRL; 2771 BP. XX AC HM007102; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Joydebpur virus-India [India/Jaunpur/Chilli/2007] clone DE pChJauB1 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus-India [India/Jaunpur/Chilli/2007] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2771 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2771 RA Chattopadhyay B., Singh A.K., Chakraborty S.; RT ; RL Submitted (16-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 760b04863bd8fe5568ad7c6768ff58a2. XX FH Key Location/Qualifiers FH FT source 1..2771 FT /organism="Tomato leaf curl Joydebpur virus-India FT [India/Jaunpur/Chilli/2007]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Jaunpur/Chilli/2007" FT /mol_type="genomic DNA" FT /country="India:Jaunpur" FT /collection_date="Feb-2007" FT /clone="pChJauB1" FT /db_xref="taxon:1000677" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LCI2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LCI2" FT /protein_id="AEA76784.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQADEQ FT EAQDVQDVQKPRCA" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LD23" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LD23" FT /protein_id="AEA76785.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVNNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1080..1484) FT /gene="AC3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LE72" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LE72" FT /protein_id="AEA76788.1" FT /translation="MDSRTGEPITAAQAENSVLIWEITNPLYFKIIEHHHRPFLRNQDI FT ITVQVRFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLKFLNNFAVISINN FT VIRAVDHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1225..1629) FT /gene="AC2" FT CDS complement(1225..1629) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LCR2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LCR2" FT /protein_id="AEA76787.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRAYLGDNKSPVFQDNRAPPPAIPEEPRHHNSPSTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1532..2617) FT /gene="AC1" FT CDS complement(1532..2617) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LDE7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LDE7" FT /protein_id="AEA76786.1" FT /translation="MPPPNKFRINAKNYFLTYPKCSLAKEEALSQLQNLDTPVNKLFIR FT VCRELHENGEPHLHVLIQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYV FT EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINTGSKAAALNILREKAPKDYVLQFH FT NLNSNLDRIFTPPLEVYISPFSSSSFDEVPEELEEWAAENVVGAAARPLRPVSVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSSSNQSAAQAGEEGDQASSS" FT gene complement(2167..2460) FT /gene="AC4" FT CDS complement(2167..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LCI3" FT /protein_id="AEA76789.1" FT /translation="MGNLIYTCSSNLRENSNAKITDSSTSFPHPGQHISIRTFRELRAL FT QMSRPMWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF" XX SQ Sequence 2771 BP; 749 A; 580 C; 643 G; 799 T; 0 other; accggatggc cgcgattttt tttcaagtgg gccccaccac gcacgtgctg aaaaggacaa 60 ttggaccaat tagaaactcc gctcaaagct taattatttc gtggtcccct atataaactt 120 gggctccaag tagtgcactc tttccaatgt gggatccgtt agtaaacgag tttcctgaaa 180 ccgttcacgg ttttaggtgt atgctagccg ttaaatatct gcagctagta gaaaagacgt 240 attctccaga cactctcggg tacgatttaa tccgtgattt aatttcagtc atcagggcta 300 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcctc gaaggtacgc 360 cgccgtctca acttcgacag cccatatacc agccgtgctg ctgcccccat tgtccgcgtc 420 accaaagcaa aagcatgggc caacaggccg atgaacagga agcccaggat gtacaggatg 480 tacagaagcc cagatgtgcc tagaggatgt gaaggcccgt gtaaggtcca gtcttttgag 540 tctagacatg atgtccaaca cataggtaaa gtcatgtgtg ttagtgatgt tactcgtgga 600 actgggctga cccatcgagt gggtaaaagg ttttgtgtta agtccgtcta tgttctgggc 660 aagatttgga tggatgagaa catcaagact aagaatcaca cgaatagcgt tatgtttttt 720 cttgttagag atcgtaggcc cgtagataag ccccaagact ttggtgaggt atttaacatg 780 tttgataatg agcccagtac ggcgactgtg aagaacgtgc atcgtgacag gtatcaggtg 840 ctgaggaagt ggcatgcaac tgtgactggt ggacaatatg catcaaagga gcaagctctc 900 gtgaagaagt ttattagggt taataattat gttgtgaata accagcaaga ggctggtaaa 960 tatgagaatc atagtgagaa tgcattgatg ttgtatatgg cgtgtaccca tgcctctaac 1020 cctgtgtatg cgacgttgaa gatccgtatc tatttttacg actctgtaac caactgaaat 1080 taataaagat tgaattttat tatatttgaa ctttgtacat gaattgtttg tgctaataca 1140 ttccataata catggtcgac agctctaatg acattgttta tactaattac agcaaaatta 1200 tttaaaaact tcaacacttg ggtcctaaat acccttaaga aatgaccagt ccgaggctgt 1260 aaggtcgtcc agattcggaa ggttagaaaa catttgtgta tccccaacgc tttcctcagg 1320 ttgtgattga accgtacttg gactgttatg atgtcttggt tcctcaggaa tggccggtgg 1380 tggtgctcga ttatcttgaa atacagggga tttgttatct cccagataag cacggaattc 1440 tctgcttgag ctgcagtgat gggttcccct gtgcgtgaat ccatagccgt ggcagcgtaa 1500 tgcgatgaaa tatgaacagc cgcagtctag gtcaactcga cgacgcctgg tccccctctt 1560 cgccagcctg tgctgcactt tgattggaac ttgagtagag tgggccttcg agggtgatga 1620 aggtcgcatt ctttaaagcc caatttttga gtgcggaatt cttctcttca tccaagaact 1680 ctttatagct ggaattgggt cctggattgc agaggaagat agcgggaatt ccacctttaa 1740 tttgaactgg ctttccgtat tttgtatttg attgccagtc cctttgggcc cccatgaatt 1800 ccttaaagtg ctttaggtaa tgcgggtcga cgtcatcaat gacgttatac caggcgtcat 1860 tactgtagac ctttgggcta aggtctaagt gaccacacaa atagttgtgt ggacccaacg 1920 accgagccca catggtcttc cctgttcgac tatcaccctc tatgactaca cttacgggtc 1980 tcaaaggccg cgcagcggca ccaacgacgt tctccgcagc ccattcctca agttcctcgg 2040 gaacttcatc aaaagaagaa gaagaaaaag gagaaatata aacctccaac ggaggtgtaa 2100 aaatcctatc taaattgcta tttaaattat gaaactgtaa aacataatct ttgggagctt 2160 tctcccttaa aatattgagg gccgcagctt tggaccctgt attgattgcc tcggcatatg 2220 cgtcgttggc agattgctga cctcctctag ctgatctgcc atcgatctgg aaaactccaa 2280 aatcaatgaa gtctccgtct ttctccacat aggccttgac atctgtagag ctcttagctc 2340 cctgaatgtt cggatggaaa tgtgctgacc gggatgggga aacgaggtcg aagaatctgt 2400 gatttttgca ttggaatttt ccctcaaatt ggatgagcac gtgtagatga ggttccccat 2460 tttcgtgtag ttctctgcaa accctaataa ataatttatt tactggagtg tctaagtttt 2520 gtaattggga aagtgcttcc tctttagcaa gagagcactt aggatatgtg aggaaataat 2580 ttttggcatt tattctgaat ttatttggag gaggcattga cttggtcaat cggtgtccag 2640 caaacttggc tatgcaattg gtgtctggtg tcttatttat atgtagacac cgaatggcat 2700 atgtgtaatt ttagaaataa ccttaattca aaattcaaat tccgacaaaa gcggccatcc 2760 gcactaatat t 2771 //