ID HM007101; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC HM007101; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Pepper leaf curl Bangladesh virus-India [India/Jabalpur/2008] clone DE pChJabB20 segment DNA-A, complete sequence. XX KW . XX OS Pepper leaf curl Bangladesh virus-India [India/Jabalpur/2008] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2755 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2755 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (16-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; d5d6d2adc02cbc62bcf063050673938a. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Pepper leaf curl Bangladesh virus-India FT [India/Jabalpur/2008]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Jabalpur/Chilli/2008" FT /mol_type="genomic DNA" FT /country="India:Jabbalpur" FT /collection_date="Nov-2008" FT /clone="pChJabB20" FT /db_xref="taxon:1000673" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LE68" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LE68" FT /protein_id="AEA76778.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTVGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT ETQDVQDVQKPRCS" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LCI1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LCI1" FT /protein_id="AEA76779.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1079..1483) FT /gene="AC3" FT CDS complement(1079..1483) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LCR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LCR1" FT /protein_id="AEA76782.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHSRPFLRNQDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINN FT VIRAVDHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1224..1628) FT /gene="AC2" FT CDS complement(1224..1628) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LDE5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LDE5" FT /protein_id="AEA76781.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRLYLGDNKSPVFQDNRAPQQAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1531..2616) FT /gene="AC1" FT CDS complement(1531..2616) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LD22" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LD22" FT /protein_id="AEA76780.1" FT /translation="MPRQHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWCRFQVDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIFQYH FT NLKNNLDKIFTPPLEVYVSPFCSSSFDQVPGELEEWAAENVLGAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDQASSG" FT gene complement(2202..2459) FT /gene="AC4" FT CDS complement(2202..2459) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LE70" FT /protein_id="AEA76783.1" FT /translation="MGACISTPSSNSRVNPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVGFRSMEDLLEEVNRQLMMLQQRP" XX SQ Sequence 2755 BP; 724 A; 577 C; 653 G; 801 T; 0 other; accggatggc cgcgattttt ttaccgtgga ccccacaccg cacgtgctga caaagacatg 60 tggaccaata aaaaacgtcc ctcatagctt aattagtcac tggtccccta tttaaacttg 120 gtccccaagt agtgcactca taccaatgtg ggatccatta gtaaacgagt tccccgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagttactag aaaatacata 240 ttctccagac actgttgggt acgatttaat cagggatttg atctctgtta ttagggctaa 300 gaattatgtc caagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccttatgcca gccgtgctgc tgcccccatt gtccgcgtca 420 caaaggccaa agcatgggcg aacaggccca tgaacaggaa acccaggatg tacaggatgt 480 acagaagccc agatgttcct agggggtgtg aaggcccgtg taaggtccag tcttttgagt 540 ccagacatga tatccaacac attggcaaag tcatgtgtgt tagtgatgtt actcgtggta 600 ctggactgac ccatagggtt gggaagaggt tctgtgttaa gtctgtttac gttctgggca 660 aggtctggat ggatgagaac atcaagacta agaatcatac gaatagtgtc atgttttttc 720 ttgttaggga tcgtaggccc gttgataagc ctcaagattt tggtgaggtt tttaacatgt 780 ttgataatga gcccagcacg gctactgtaa agaatgtcca tcgtgacagg taccaagtgc 840 tgaggaagtg gcatgcaacc gttacaggtg gtcaatatgc atcaaaggag caagcgctcg 900 tgaagaagtt tattagggtt aataattatg ttgtgtataa ccagcaagag gctggtaagt 960 atgagaatca tagtgagaat gcattgatgt tgtatatggc gtgtacccat gcctctaacc 1020 ctgtgtatgc gacgttgaag atccgtatct atttttacga ctctgtaacc aactgaaatt 1080 aatagagatt gaattttatt atatttgaac tttgtacatg aattgtttgc gctaatacat 1140 tccataatac atgatcgaca gctctaatta cattgtttat actaattaca gcaaaattat 1200 ttaaaaactg caacacttgg gtcctaaata cccttaagaa atgaccagtc tgaggctgta 1260 aggtcgtcca gattcggaag gttagaaaac atttgtgtat ccccaacgct ttcctcaggt 1320 tgtgattgaa ccgtatctgc acggtgatga tgtcttggtt cctcaggaat ggcctgctgt 1380 ggtgctcggt tatcttgaaa tacaggggat ttgttatctc ccagataaag acggaattct 1440 ctgcttgagc tgcagtgatg ggttcccctg tgcgtgaatc catagccgtg gcagcgtaat 1500 gctatgaaat atgaacaccc gcagtctaag tcaacccgac gacgcctggt ccccttcttg 1560 gccagcctgt gctgcacttt gattggaacc tgagtagagt gggccttcga gggtgatgaa 1620 ggtcgcattc tttaaagccc aatttttgag tgcgctattt ttctcttcat ccaagaactc 1680 tttatagctg gaattgggtc ctggattgca gaggaagata gcgggaattc cacctttaat 1740 ttgaactggc tttccgtatt tagtgtttga ttgccagtcc ctttgggccc ccatgaattc 1800 cttaaagtgc tttaggtagt ggggatcgac gtcatcaatg acgttgtacc aggcgtcatt 1860 actgtagacc tttgggctaa ggtcgagatg tccacacaaa tagttgtgtg gacctaatga 1920 cctggcccac atagtcttcc ccgtcctact atcaccctct atgacaatac ttatgggtct 1980 taacggccgc gcagcggcac cgagaacatt ctcggcagcc cattcctcaa gttccccggg 2040 aacttgatca aaagaagaag aacaaaaagg agaaacataa acctccaagg gaggtgtaaa 2100 aatcttatct aaattattct ttaaattatg atactgaaaa ataaaatctt taggcagttt 2160 ttccctaatt attgctaagg ctgcgtcagc agaacctgca tttaaggcct ctgctgcagc 2220 atcattagct gtctgttgac ctcctcgagc agatcttcca tcgacctgaa acctacacca 2280 gtcgatgtaa tcaccgtcct tctcgatgta ggacttgaca tcagagctgg acttagctcc 2340 ctggaagttt gggtggaatt gggtggcgtt attagggtga gtgacatcga aatgtctggg 2400 gtttcggaac tgggatttac ccttgaattg gatgagggcg tggatatgca ggctcccatc 2460 ttggtgtttc tcttgtgaca ctcggataaa taatttgtca gaagggcagg aaatgttttt 2520 aagaagttcg agcatttgct ccttcggtat tgggcatttg ggataagtaa ggaagatatt 2580 tttggcctta acttggaatt ggtgttgacg tggcatattg aattgggtgc tcttcaaaac 2640 tctatgtaat ggggtgcttt gggtgcctat ttatatggag ctcccaaatg gcaaatttgt 2700 aatttgccct actttaattc aaattcccga gaatcgcggc catccgtata atatt 2755 //