ID HM007100; SV 1; circular; genomic DNA; STD; VRL; 2745 BP. XX AC HM007100; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Chilli leaf curl Multan virus-India [India/Guntur/2009] clone pChGuB16 DE segment DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl Multan virus-India [India/Guntur/2009] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2745 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2745 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (16-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 38c8acef09081bda7b86549244de8ffd. XX FH Key Location/Qualifiers FH FT source 1..2745 FT /organism="Chilli leaf curl Multan virus-India FT [India/Guntur/2009]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Guntur/Chilli/2009" FT /mol_type="genomic DNA" FT /country="India:Guntur" FT /collection_date="Jan-2009" FT /clone="pChGuB16" FT /db_xref="taxon:1000666" FT gene 149..511 FT /gene="AV2" FT CDS 149..511 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LCQ9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LCQ9" FT /protein_id="AEA76772.1" FT /translation="MWDPLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLI FT SVIRARNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKVKSMGQQAHESE FT AQDVQDVQEPRCSKGM" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LE66" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LE66" FT /protein_id="AEA76773.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKSRAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPNDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1073..1477) FT /gene="AC3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LDE2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LDE2" FT /protein_id="AEA76776.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFFRNRDI FT INVQIRFNQNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLRVLNNFAVISINN FT VIRAADHVLWNVLQHTVYVQQSYSIKFNLY" FT gene complement(1218..1622) FT /gene="AC2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LD21" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LD21" FT /protein_id="AEA76775.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAILPEPRHHQRADTVQSKP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1525..2610) FT /gene="AC1" FT CDS complement(1525..2610) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LCI0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LCI0" FT /protein_id="AEA76774.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLSKEEALSQLQNLETPVNKLYIR FT VCRELHENGEPHLHVLLQFEGKYQCTNNRFFDLISSSRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPGELEVWAAENVVSAAARPLRPMSIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFFTLAGPL FT YSGSNQSAAQAGQEGDQASSR" FT gene complement(2160..2453) FT /gene="AC4" FT CDS complement(2160..2453) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LCR0" FT /protein_id="AEA76777.1" FT /translation="MGNLIYTCSSNSRENINAQTTDSSTSFPHPGQHISIRTFRELRAL FT QMSKPTWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF" XX SQ Sequence 2745 BP; 754 A; 580 C; 630 G; 781 T; 0 other; accggatggc cgcgattttt tttaccatgg tccccaccac acgcactaac ggacaaatac 60 acgtggacca atgaaattgg ctcctcgttg cttaattatt gaatggtcct ctatataaac 120 ttggtcccca agtagtgcac acctaccaat gtgggatcca ttaaacgagt tccctgaaac 180 cgttcacggt tttaggtgta tgttagccgt taaatatctg cagttagtag aaaatacgta 240 ttctccagat actctggggt acgatttaat cagggattta atttcagtta ttagggctag 300 aaattatgtc gaagcgacca gcagatataa tcatttccac tcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccatatgcca gccgtgctgc tgcccccatt gtccgcgtca 420 caaagtcaag agcatgggcc aacaggccca tgaatcggaa gcccaggatg tacaggatgt 480 acaggagccc agatgttcca aggggatgtg aaggcccatg taaggtccag tcgtttgagt 540 ctagacacga tgtagttcat ataggcaagg tcatgtgtat tagtgatgtt acccgtggta 600 ctgggttaac ccatagagta ggtaagcgct tctgtgttaa gtctgtgtat gtattaggga 660 agatatggat ggatgagaat atcaagacta agaatcacac gaatagtgtg atgttcttcc 720 ttgtacgtga tcgtcgtcca aatgataaac cacaagattt tggagaggtg ttcaacatgt 780 ttgacaacga gcctagtact gcaactgtga agaatatgca tagggatcgt tatcaggttt 840 tgaggaaatg gcacgcaacg gttaccggtg gacagtatgc ttcgaaggaa caggcattag 900 ttaagaagtt cgttagggtt aacaattatg ttgtgtataa ccagcaggaa gctgggaaat 960 atgaaaatca cacagagaat gctctgatgt tgtacatggc atgtacccat gcctctaacc 1020 ctgtgtatgc tactttgaag atacggatct atttctacga ttcagtatcg aattaataaa 1080 gattgaattt tattgaatac gactgttgta catatacagt gtgttgtaat acattccata 1140 atacatgatc agctgcccta attacattat ttatggaaat tacagcaaaa ttatttaaaa 1200 cacgcaacac ttgggtccta aataccctta agaaatgacc agtccgaggc tgtaaggtcg 1260 tccagattcg gaaggttaga aaacatttgt gtatccccaa cgctttcctc aggttttgat 1320 tgaaccgtat ctgcacgttg atgatgtctc ggttccggaa gaatggcctg ttgtggtgct 1380 cggttatctt gaaatacagg ggatttgtta tctcccagat aaacacgcca ttctctgctt 1440 gagctgcagt gatgggttcc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg 1500 aaataggagc agccgcaatc taggtcaacg cgacgacgcc tggtcccctt cttggccagc 1560 ctgtgctgca ctttgattgg aacctgagta gagtgggcct gcgagggtga agaaggtcgc 1620 attttttaaa gcccaatgtt tgagtgcgga attcttctcc tcatccaaga actctttata 1680 gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggctttccg tatttcgtat ttgattgcca gtccctttgg gcccccatga attctttaaa 1800 gtgttttaga taatgcggat caacgtcatc aatgacgtta taccacgcat cattgctgta 1860 caccttaggg ctaaggtcta ggtgaccaca taggtagtta tgtggaccca atgacctagc 1920 ccacatggtc ttccctgtac gactatcacc ctctagcaca atactcatgg gtctcaaagg 1980 ccgcgcagcg gcactcacca cattctcggc agcccagact tcaagttctc caggaacttg 2040 atcaaaagaa gaagaacaaa aaggagaaac ataaacctcc aacggaggtg taaaaatcct 2100 atctaaatta gcatttaaat tgtgaaattg taaaacataa tctttgggag ccttttccct 2160 taaaatattg agggccgaag acttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagattgg caacctcctc tagctgatct gccatcgatc tggaaaactc caaagtcaat 2280 gaagtctccg tctttctcca cgtaggcttt gacatctgaa gagctcttag ctctctgaat 2340 gttcggatgg aaatgtgctg accgggatga ggaaatgagg tcgaagaatc tgttgtttgt 2400 gcattgatat tttccctcga attggaggag cacgtgtaga tgaggttccc cattctcgtg 2460 caattctctg caaaccctaa tatataattt attaactgga gtttctaagt tttgtaattg 2520 ggaaagggcc tcttctttac taagagagca attgggataa gttaggaaat aattttttgc 2580 atttatattg aatctgccag cacgaggcat tttggtggac actctaattc tctgtatatc 2640 ggtggaatgg gggaccttat atatggtgtc caccaatggc aacttgtaat taccatgtaa 2700 gttccaatca atttcccgcc aatcgcggcc atccgcatta atatt 2745 //