ID HM007098; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC HM007098; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Joydebpur virus-India [India/Ghazipur/Chilli/2007] clone DE pChGhB38 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus-India [India/Ghazipur/Chilli/2007] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2760 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2760 RA Singh A.K., Yadav T., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (16-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; a712bae51926b5e4370d6ff4cc415de8. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Tomato leaf curl Joydebpur virus-India FT [India/Ghazipur/Chilli/2007]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Ghazipur/Chilli/2007" FT /mol_type="genomic DNA" FT /country="India:Ghazipur" FT /collection_date="Nov-2007" FT /clone="pChGhB38" FT /db_xref="taxon:1000676" FT gene 145..501 FT /gene="AV2" FT CDS 145..501 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LDD8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LDD8" FT /protein_id="AEA76766.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQADEQ FT EAQDVQDVQKPRCA" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LCQ8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LCQ8" FT /protein_id="AEA76767.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKFVYVLGKIWMDENIKTKNHTHSAMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LD20" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LD20" FT /protein_id="AEA76770.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKIIDHHHRPFLRNHDI FT ITVQVRFNHNLRKALGIHQCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN FT VIRAVDHVLWNVIAQTIYVQSSNIIKFNIY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LCH9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LCH9" FT /protein_id="AEA76769.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRPPPPAIPEEPRHHNSPSTVQSQP FT EESVGDTPMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1524..2609) FT /gene="AC1" FT CDS complement(1524..2609) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LE65" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LE65" FT /protein_id="AEA76768.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLQNLETPTNKLFIR FT ICRELHENGSPHLPCPRPIRRKIPVQKPDPSISHPQPGQHISIRTFRGAKSSTDVKTYM FT EKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNTNLDRIFTPPLEVYVSPFCSSSFDRVPQELEEWAAENVVSAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNCLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFVTLEGPL FT YSGSNQSAAQAGEEGDQASSS" FT gene complement(2159..2452) FT /gene="AC4" FT CDS complement(2159..2452) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="UniProtKB/TrEMBL:H9LDE0" FT /protein_id="AEA76771.1" FT /translation="MGLLTCHVLVQFEGKFQCKNPILRSHIPNPVNTFPSEHSGELRAL FT QMSKPTWRKTETCLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGPSHRPSIF" XX SQ Sequence 2760 BP; 732 A; 575 C; 654 G; 799 T; 0 other; accggatggc cgcgattttt tgaagtgggc cccacaacac acgtgctgac aaggacaagt 60 gaaccaatta gaaacgcccc tcaaagctta attattcaat ggtcccctat ataaacttgg 120 tccccaagta gtgcactctt tccaatgtgg gatccattag taaacgagtt tcctgaaacc 180 gttcacggtt ttaggtgtat gctagccgtt aaatatctgc agctagtaga aaagacgtat 240 tctccagaca ctctcgggta cgatttaatc cgtgatttaa tttcagtcat cagggccaga 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc catataccag ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaaa gcatgggcca acaggccgat gaacaggaag cccaggatgt acaggatgta 480 cagaagccca gatgtgccta gaggatgtga aggcccgtgt aaggtccagt cttttgagtc 540 tagacatgat gtccaacaca taggtaaagt catgtgtgtt agtgatgtta ctcgtggaac 600 tgggctgacc catcgagtgg gtaaaaggtt ttgtgttaag ttcgtctatg ttctgggcaa 660 gatttggatg gatgagaaca tcaagactaa gaatcacacg catagcgcta tgtttttcct 720 tgttagagat cgtaggcccg tagataagcc ccaagacttt ggtgaggtat ttaacatgtt 780 tgataatgag cccagtacgg cgactgtgaa gaacgtgcat cgtgacaggt atcaggtgct 840 gaggaagtgg catgcaactg tgacaggtgg acaatatgca tcgaaggagc aagcgctcgt 900 gaagaagttt attagggtta acaattatgt cgtgtataac cagcaagaag ctgggaaata 960 tgaaaaccat tctgaaaatg cattgatgtt gtacatggcg tgtacccacg cctctaatcc 1020 tgtgtatgct actttgaaga tacggatcta tttctatgat tccgtaacaa attaataaat 1080 attgaatttt attatgtttg aactttgtac ataaattgtt tgcgctatta cattccataa 1140 tacatggtcg acagctctaa ttacattatt gatactaatt acagcaaaat tatttaaaaa 1200 ctgcaacact tgggtcctaa atacccttaa gaaatgacca gtccgaggct gtaaggtcgt 1260 ccagattcgg aaggttagaa aacattggtg tatccccaac gctttcctca ggttgtgatt 1320 gaaccgtact tggactgtta tgatgtcgtg gttcctcagg aatggccggt ggtggtggtc 1380 gattatcttg aaatacaggg gatttgttat ctcccagata aacacggaat tctctgcttg 1440 agctgcagtg atgggttccc ctgtgcgtga atccatatcc gtggcagcgt aatgctatga 1500 aatatgaaca gccgcagtct aggtcaactc gacgacgcct ggtccccctc ttcgccagcc 1560 tgtgctgcac tttgattgga acctgagtag agtgggcctt cgagggtgac gaaggtcgca 1620 ttctttaaag cccaattttt aagtgcgcta tttttctctt catccaagaa ctctttatag 1680 ctggagttgg gtcctggatt gcagaggaag atagcgggaa tgccgccttt aatttgaact 1740 ggctttccgt attttgtatt tgattgccag tccctttggg cccccatgaa ttccttaaag 1800 tgctttaggt agtgcgggtc gacgtcatca atgacgttat accaggcgtc attactatag 1860 acctttgggc taaggtcgag atgtccacac aaacagttgt gtggacctag tgacctggcc 1920 cacattgttt tgcccgttct actgtcgccc tctatcacta tactcatggg cctcaatggc 1980 cgcgcagcgg cactgacgac gttctcggca gcccactcct caagttcttg tggaactcga 2040 tcaaaagaag aagaacaaaa aggagaaaca taaacctcca acggaggtgt aaaaatccta 2100 tctaaattag tatttaaatt atgaaattgt aaaacataat ctttgggagc tttctccctt 2160 aaaatattga gggccgatga cttggaccct gaattgattg cctcggcata tgcgtcgttg 2220 gcagattggc aacctcctct agctgatctt ccatcgactt ggaaaattcc atgatcaagc 2280 acgtctccgt ctttctccat gtaggttttg acatctgtag agctcttagc tcccctgaat 2340 gttcggatgg aaatgtgttg accgggttgg ggatgtgaga tcgaaggatc gggtttttgc 2400 actggaattt tccttcgaat tggacgagga catggcaagt gaggagaccc attttcgtgt 2460 agttctctac agattctaat aaataattta ttggttgggg tttctaggtt ttgtaattgg 2520 gaaagtgcct cttctttggt gagagagcag tgtgggtatg tgaggaaata atttttggca 2580 ttgatcctga atttatttgg aggagccatt gacttggtca atcggtgtcc aacaaacttg 2640 gctatgcaat tggtgtctgg tgtcttattt atatgtggac accaatggca tatgtgtaat 2700 ttttgaaaat gactttaatt caaatttcaa aattcccaaa gcggccatcc gtctaatatt 2760 //