ID HM007096; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC HM007096; XX DT 11-APR-2012 (Rel. 112, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 2) XX DE Pepper leaf curl Bangladesh virus isolate India/Coimbatore/Chilli/2008 DE segment DNA-A, complete sequence. XX KW . XX OS Pepper leaf curl Bangladesh virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2754 RA Singh A.K., Vinothkumar R., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (16-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; ab0515c0c08fc6f3afc8d86e5c11ee0f. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Pepper leaf curl Bangladesh virus" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Coimbatore/Chilli/2008" FT /mol_type="genomic DNA" FT /country="India:Coimbatore" FT /collection_date="Nov-2008" FT /clone="pChCoB2" FT /db_xref="taxon:223305" FT gene 148..513 FT /gene="AV2" FT CDS 148..513 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LCH6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LCH6" FT /protein_id="AEA76754.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICQPCCCPHCPRHKGKSMGQQAHES FT EAKDVQDVQEPRCSKGM" FT gene 308..1078 FT /gene="AV1" FT CDS 308..1078 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LD17" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LD17" FT /protein_id="AEA76755.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1075..1479) FT /gene="AC3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LE61" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LE61" FT /protein_id="AEA76758.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNQDI FT LTVQIQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLHFLNNFAVISINN FT VIRAVDHVLWNVLHHVVYVQQSYSIKFNIY" FT gene complement(1220..1624) FT /gene="AC2" FT CDS complement(1220..1624) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LCQ6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LCQ6" FT /protein_id="AEA76757.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGIRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRTPQQAIPPEPRHPHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1527..2612) FT /gene="AC1" FT CDS complement(1527..2612) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LDD4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LDD4" FT /protein_id="AEA76756.1" FT /translation="MPRTQSFCVNAKNIFLTYPKCPIPKDQMLEIIRAINCPSDKLFIR FT VAQEKHQDGSLHIHSLIQFKGKSKFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGNFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKSNLDRIFTPPPEVYVSPCCSSSFDQVPEDLEEWAAVNVVSAAARPLRPVSVVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKYWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDQASSR" FT gene complement(2198..2455) FT /gene="AC4" FT CDS complement(2198..2455) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LCH7" FT /protein_id="AEA76759.1" FT /translation="MGLCISTPSSNSKVSPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVTFRSMDDLLEEVNRQLMMLPQRR" XX SQ Sequence 2754 BP; 755 A; 565 C; 645 G; 789 T; 0 other; accggatggc cgcgattttt ttactatggt ccccaccaca cgcactaaag gacagataca 60 cgtggaccaa tcaaattggc tcctcgtggc ttaattattc actggtcccc tatttaaact 120 tggtccccaa gtagtgcaca cctaccaatg tgggatccat tagtaaacga gttcccggaa 180 accgttcacg gttttaggtg tatgttagcc gttaaatatc tacaactggt agaaaatacg 240 tattctccag atactttggg gtacgattta atcagggatt taatttcagt tattagggct 300 agaaattatg tcgaagcgac cagcagatat aatcatttcc acgcccgctt cgaaggtacg 360 ccgccgtctc aacttcgaca gcccatatgc cagccgtgct gctgccccca ttgtccgcgt 420 cacaaaggca agagcatggg ccaacaggcc catgaatcgg aagccaagga tgtacaggat 480 gtacaggagc ccagatgttc caaggggatg tgaaggccca tgtaaggtcc agtcttttga 540 gtctagacac gatgtagttc atatagggaa ggtgatgtgt attagtgatg ttactcgtgg 600 tactgggtta acccatagag taggtaagcg tttctgtgtt aagtctgtgt atgtattagg 660 gaagatatgg atggatgaga atatcaagac taagaatcac acgaatagtg tgatgttctt 720 tcttgtccgt gatcgtcgtc ctgttgataa accacaagat ttcggagagg tgttcaacat 780 gtttgacaac gagcctagca ctgctactgt gaagaatatg catagggatc gttatcaggt 840 gttgaggaaa tggcatgcaa cggttaccgg tggacagtat gcttcgaagg aacaggcatt 900 agttaagaag ttcgttaggg ttaacaatta tgttgtgtat aaccagcagg aagctggaaa 960 atatgaaaat cacactgaga atgctttgat gttgtacatg gcatgtactc atgcctctaa 1020 ccctgtgtat gctacattga agatacggat ctatttctat gattcagtat cgaattaata 1080 aatattaaat tttattgaat atgactgttg tacatataca acgtgatgta atacattcca 1140 taacacatga tcaacggctc taattacatt gtttatacta attacagcaa aattatttaa 1200 aaagtgcaat acttgggtcc taaataccct taagaaatga ccagtccgag gctgtaaggt 1260 cgtccagatt cggaaggtta gaaaacattt gtgtatcccc aacgctttcc tcaggttgtg 1320 attgaactgt atctgcacgg tgaggatgtc ttggttccgg aggaatggcc tgttgtggtg 1380 ttcggttatc ttgaaataca ggggatttgt tatctcccag ataaacacgc cattctctgc 1440 ttgagctgca gtgatgggtt cccctgtgcg tgaatccata gccgtggcag cgtaatgcga 1500 tgaaatagga acagccgcag tcaaggtcaa cgcgacgacg cctgatcccc ttcttggcca 1560 gcctgtgctg cactttgatt ggaacctgag tagagtgggc cttcgagggt gatgaaggtc 1620 gcattcttta aagcccaata ttttagtgcg gaattctttt cttcatccaa gaactcttta 1680 tagctagaat tgggtcctgg attgcagagg aagatagcgg gaattccacc tttaatttga 1740 actggctttc cgtatttggt atttgattgc cagtcccttt gggcccccat gaattcttta 1800 aagtgcttta aataatgcgg atcgacgtca tcaatgacgt tataccacgc atcattactg 1860 tacaccttag ggctaaggtc taagtgacca cataggtagt tatgtggacc caaagaccta 1920 gcccacatgg tctttcccgt ccgactttca ccctctatca ctacacttac gggccttaat 1980 ggccgcgcag cggcactcac aacgttcacg gcagcccatt cctcaaggtc ttccggaact 2040 tgatcaaaag aagaagaaca acaaggagaa acataaacct ccggaggagg tgtaaagatc 2100 ctatctaaat tagactttaa attatgatat tgaaaaataa aatcttttgg gagtttttcc 2160 cttattatcg ctaaagctgc ttcagctgaa ccggcattta acgcctctgc ggcagcatca 2220 ttagctgtct gttgacctcc tcgagcagat cgtccatcga tctgaaagtt accccagtcg 2280 atgtaatcac cgtccttctc gatgtaggac ttgacatcag agctggactt agctccctgg 2340 aagtttgggt ggaattgggt ggagttatta gggtgagtga catcgaaatg tctggggttt 2400 ctgaacttgg acttaccttt gaattggatg agggagtgga tatgcagaga cccatcttgg 2460 tgtttctctt gtgccactct aataaataat ttatcagatg ggcaatttat tgcccgaata 2520 atttcgagca tttggtcttt gggtattggg catttgggat aagtaaggaa gatatttttg 2580 gcattaacac aaaacgactg cgttcgaggc atattgaatt ggggacactc aaaactctga 2640 ggaatggggg actctgggga cgcatttata tggagtcccc aaatggcatt tgcgtaaata 2700 cgcaataaat tttaaaatta tcacgctcca aatcgcggcc atccgtataa tatt 2754 //