ID HM007095; SV 1; circular; genomic DNA; STD; VRL; 2764 BP. XX AC HM007095; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Joydebpur virus-India [India/Baruipur/Chilli/2007] clone DE pCHBarB22 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus-India [India/Baruipur/Chilli/2007] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2764 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2764 RA Singh A.K., Basu S., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (16-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 396906db58753fdf0dff7a0711f40164. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Tomato leaf curl Joydebpur virus-India FT [India/Baruipur/Chilli/2007]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Baruipur/Chilli/2007" FT /mol_type="genomic DNA" FT /country="India:Baruipur" FT /collection_date="Nov-2007" FT /clone="pCHBarB22" FT /db_xref="taxon:1000680" FT gene 142..507 FT /gene="AV2" FT CDS 142..507 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LE57" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LE57" FT /protein_id="AEA76748.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPILQPCCCPHCPRHQSKSMGEQAHEQ FT EAQDVQDVQKPRCAEGM" FT gene 302..1072 FT /gene="AV1" FT CDS 302..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LCH5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LCH5" FT /protein_id="AEA76749.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQAIVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1075..1479) FT /gene="AC3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LCQ5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LCQ5" FT /protein_id="AEA76752.1" FT /translation="MDSRTGELITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN FT VIRAVDHVLWNVIAHTIHVHLWYSIKYNIY" FT gene complement(1220..1624) FT /gene="AC2" FT CDS complement(1220..1624) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LDD2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LDD2" FT /protein_id="AEA76751.1" FT /translation="MRPSSPSKAHSTPVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1527..2612) FT /gene="AC1" FT CDS complement(1527..2612) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LD16" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LD16" FT /protein_id="AEA76750.1" FT /translation="MPPPKRFQIYAKNYFLTYPQCSLTKEDALSQLQNLNTPTNKLFIR FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYV FT EKDGDFVDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLSANLDRIFTPPLEVYVSPFSASSFDQVPDELEEWAAENVVSAAARPLRPVSVVVQGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKAYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQTSSR" FT gene complement(2162..2461) FT /gene="AC4" FT CDS complement(2162..2461) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LE59" FT /protein_id="AEA76753.1" FT /translation="MKMGNLICTSSYSSKVNSSAKTTDSSTSFPLPGQHISIRTFRELK FT ARRMSRPMWKKTETSLILEFSRSMEDRLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2764 BP; 744 A; 589 C; 660 G; 771 T; 0 other; accggatggc cgcgattttt tttattgtgg gccccatcac acacgtgctg acaaggacaa 60 ttggaccaat tagaaacgcc gctcaaagct taattgtttc gtggtcccct tataagagaa 120 ggtgggcctt ccctaaatac aatgtgggat ccattagtaa acgagtttcc cgaaaccgtt 180 cacggtttta ggtgtatgct agccgttaaa tatcttcagc tagtagaaaa gacgtattct 240 ccagacactc tcgggtacga tttaatccgg gatttaattt cagtcatcag ggccagaaat 300 tatgtcgaag cgaccagcag atataatcat ttccacgccc gcctcgaagg tacgccgccg 360 tctcaacttc gacagcccat actccagccg tgctgctgcc cccattgtcc gcgtcaccaa 420 agcaaaagca tgggcgaaca ggcccatgaa caggaagccc aggatgtaca ggatgtacag 480 aagcccagat gtgccgaggg gatgtgaagg cccatgtaag gtccagtcgt ttgagtctcg 540 acatgatgtc caacacatag gtaaagtcat gtgtgttagt gatgttaccc gtggaactgg 600 gcttacccat cgagttggta aaaggttttg tgttaagtcc gtctatgttc tgggcaagat 660 ttggatggat gagaacatca agaccaagaa tcacacgaat agtgttatgt ttttccttgt 720 tagagatcgt aggcccgtag ataagcccca agactttggt gaggtattca acatgtttga 780 taatgagccc agtacggcga ctgtgaagaa cgtgcatcgt gacaggtatc aggtgctcag 840 gaagtggcat gcaactgtga ctggtggtca atatgcatcg aaggagcaag ccatcgtgaa 900 gaagtttatt agggttaaca attatgttgt gtataaccag caagaggctg gcaagtatga 960 gaatcatagt gagaatgcgt tgatgttgta tatggcgtgt acccacgcct ctaaccctgt 1020 gtatgcgacg ttgaagatac ggatctattt ctacgattct gtaaccaatt gaaattaata 1080 aatgttatat tttattgaat accataggtg tacatgaatt gtgtgtgcta ttacattcca 1140 taatacatgg tcgaccgctc taattacatt atttatacta attacagcaa aattatttaa 1200 aaactgcaac acttgggtcc taaataccct taagaaatga ccagtccgag gctgtaaggt 1260 cgtccagatt cggaaggtta gaaaacattt gtgtatcccc aacgctttcc tcaggttgtg 1320 attgaaccgt atctgcacgg tgatgatgtc tcggttcctc aggaatggcc tgttgtggtg 1380 ctcggttatc ttgaaataca ggggatttgt tatctcccag ataaacacgc cattctctgc 1440 ttgagctgca gtgatgagtt cccctgtgcg tgaatccata gccgtggcag cgtaatgcga 1500 tgaaatatga acagccgcag tctaggtcaa cgcgacgacg tctggtcccc ttcttggcta 1560 gcctgtgctg cactttgatt ggaaccggag tagagtgggc cttcgagggt gatgaaggtc 1620 gcattcttca aagcccaatt tttgagtgcg ctatttttct cttcatccaa gaactcttta 1680 tagctggagt tgggtcctgg attgcagagg aagatagcgg gaatgccacc tttaatttga 1740 actggctttc cgtatttagt atttgattgc cagtcccttt gggcccccat gaattcctta 1800 aagtgcttta ggtagtgggg atcgacgtca tcaatgacgt tgtaccaggc gtcattactg 1860 taggccttag ggctaaggtc tagatgacca cacaaatagt tgtgtggacc caacgaccta 1920 gcccacaccg ttttccccgt tcgactatca ccctgtacca ctacacttac gggtcttaat 1980 ggccgcgcag cggcactcac cacgttctcc gcagcccatt cctcaagttc atcgggaact 2040 tgatcaaaag aagaagcaga aaaaggagaa acataaacct ccaagggagg tgtaaaaatt 2100 ctatctaaat ttgcacttaa attatggaac tgtaatacat aatctttggg agctttctcc 2160 cttaatatat tgagggccgc agctttggac cctgaattga ttgcctcggc atatgcgtcg 2220 ttggcagact gctgacctcc tctagccgat cttccatcga tctggaaaac tccaaaatca 2280 acgaagtctc cgtctttttc cacataggcc ttgacatccg acgagctttt agctccctga 2340 atgttcggat ggaaatgtgc tgacctggta ggggaaacga ggtcgaagaa tctgttgttt 2400 tggcacttga atttaccttc gaactgtatg aggacgtgca gatgaggttc cccattttca 2460 tgtaattcgc gagaaacccg gatgaataat ttattagtag gggtgtttag gttttgaagt 2520 tgggaaagtg catcctcttt agtgagggaa cactgtggat aggttaagaa ataattttta 2580 gcatatattt gaaaacgttt tggaggaggc atgttgactt ggtcaatcgg tactcaacaa 2640 acttggctat gcaatcggtg aatggtactc aatatatagt gtgagtaccg aatggcatgt 2700 tcgtaatttt gaaagaaaat tcaaaattca aaatccgaca aaagcggcca tccgcactaa 2760 tatt 2764 //