ID HM007094; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC HM007094; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Karnataka virus-India [India/Banglore/Chilli/2008] clone DE pChBanB2 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Karnataka virus-India [India/Banglore/Chilli/2008] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2760 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2760 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (16-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; fd20c4a20aab0dd0310a77c64ba69f55. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Tomato leaf curl Karnataka virus-India FT [India/Banglore/Chilli/2008]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Banglore/Chilli/2008" FT /mol_type="genomic DNA" FT /country="India:Bangalore" FT /collection_date="Nov-2008" FT /clone="pChBanB2" FT /db_xref="taxon:1000681" FT gene 144..500 FT /gene="AV2" FT CDS 144..500 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LCQ3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LCQ3" FT /protein_id="AEA76742.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene 304..1074 FT /gene="AV1" FT CDS 304..1074 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LE55" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LE55" FT /protein_id="AEA76743.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDQPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1071..1475) FT /gene="AC3" FT CDS complement(1071..1475) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LDC9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LDC9" FT /protein_id="AEA76746.1" FT /translation="MDSRTGELITAAQAEIGVFIWEIQNPLYFKITEHHNRPFLMNQDI FT ITVQVQFNHNLRKVLGIHKCFLVFRIWMTSQPPTGRFLRVFKTQVLKFLNNLGVISINN FT VIRAVDHVLWNVLHHVVYVDQTYSIKFNIY" FT gene complement(1216..1620) FT /gene="AC2" FT CDS complement(1216..1620) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LD15" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LD15" FT /protein_id="AEA76745.1" FT /translation="MRSSSPSKAHSTHVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSRDWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGI" FT gene complement(1523..2608) FT /gene="AC1" FT CDS complement(1523..2608) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LCH4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LCH4" FT /protein_id="AEA76744.1" FT /translation="MTAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPSRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFH FT NLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLNLSQKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNIKYQKPVQIKGGIPTIFLCNPGPDSSYKEFLDEEKNSKLKNWAIKNAIFVTLESPL FT YSRSNQSEAQASQEGEQASSC" FT gene complement(2158..2451) FT /gene="AC4" FT CDS complement(2158..2451) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LCQ4" FT /protein_id="AEA76747.1" FT /translation="MGLLTCMFSSSSKENSSARTIDSSTLPPQAGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2760 BP; 741 A; 540 C; 635 G; 844 T; 0 other; accggatggc cgcgattttt tttgtgggcc ccccaacgca ctaactgaca aggacatgct 60 aatcaatcac atgacgtgct caaagcttaa ttgttttgtg gtcccctatt taaacttcgg 120 caccaagtat tgtattttgc actatgtggg atccattgtt aaacgagttt cctgaaaccg 180 ttcacggttt tagatgtatg ttagcagtta aatatctgca gttagtagaa aagacctatt 240 ctcccgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa 300 attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa ggtacgtcgc 360 cgtctcaact tcgacagccc atatgtgagc cgtgctgctg cccccattgt ccgcgtcacc 420 aaagcaaaag catgggcgaa caggcccatg aacagaaagc ccaggatgta caggatgtac 480 agaagtccag atgtccctag aggatgtgaa ggcccatgta aggtccagtc gtttgagtcc 540 agacacgatg tagtccatat aggcaaggtc atgtgtatta gtgatgtcac tcgtggaacc 600 gggctgaccc atcgagtggg taaaaggttt tgtgttaagt ctgtttacgt tttggggaag 660 atatggatgg atgagaacat caagaccaag aaccacacga acagtgtcat gttttttctt 720 gttcgtgacc gtcgtcctgt tgaccagcca caagactttg gagaggtgtt caatatgttt 780 gacaacgagc ctagcactgc tactgttaag aatatgcaca gagatcgtta tcaggtgttg 840 aggaagtggc atgcaactgt caccggtgga cagtacgctt caaaggaaca ggcattagtg 900 aagaagtttg ttagggttaa taattatgtt gtttataacc agcaagaggc tgggaagtat 960 gagaatcatt ctgagaatgc attgatgttg tatatggcgt gtactcacgc ctctaaccct 1020 gtgtatgcta ctttgaagat acggatctat ttctatgatt cagtatcgaa ttaataaata 1080 ttgaatttta ttgaatatgt ttggtctaca tatacaacgt ggtgtaatac attccataat 1140 acatgatcaa cggctctaat tacattgtta atactgataa ctcctaaatt atttaaaaac 1200 ttaagcactt gggtcttaaa tacccttaag aaacgaccag tcggaggctg tgaggtcatc 1260 cagattcgga agactaggaa acatttgtgt atccccaaca ctttcctcag gttgtgattg 1320 aactgtactt ggacggtgat gatgtcttgg ttcatcagga atggccggtt gtgatgctct 1380 gttatcttga aatatagggg attttgaatc tcccagataa acacgccaat ctctgcttga 1440 gctgcagtga tgagttcccc tgtgcgtgaa tccatggtcg tggcaggcta atgctatgaa 1500 gtaagaacag ccgcacggta gatcaacacg acgacgcctg ttccccttct tggctagcct 1560 gtgcttcact ttgattggaa cgtgagtaga gtgggctttc gagggtgacg aagatcgcat 1620 tctttatagc ccagtttttt agtttagaat tcttttcttc atccaagaat tctttatagc 1680 ttgagtcggg tcctggattg cagaggaaga ttgtgggaat tccgccttta atttgaactg 1740 gcttctggta ctttatattt gattgccagt ccctttgggc ccccatgaat tccttaaagt 1800 gctttaggta gtgggggtct acgtcatcaa ttacgttata ccaggcatca ttactgtaga 1860 ccttttggct aaggtttaga tgaccacata gataattatg tggtccaagt gatctggccc 1920 acatcgtctt cccagttcta ctgtcaccct caatcactat acttatgggc cttaaaggcc 1980 gcgcagcggc actgacgacg ttctcggcag cccattcctc aagttcttct ggaacttgat 2040 caaaggaaga agaagaaaaa ggagaaacat aaacctccat tggaggtgta aaaatcctat 2100 ctaaattaga atttaaattg tgaaattgta aaacataatc tttgggagcc ttctccctta 2160 atatattgag ggcctcaatt ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcttc catcgacttg gaaaactcca tgatcaagga 2280 tgtctccgtc tttctccatg taggttttga catcgcttga gcttttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctgcttgggg aggtaaggtc gaagaatcta ttgttcttgc 2400 actggaattt tccttcgaac tggatgagaa catgcaagtg aggagtccca tcttcgtgaa 2460 gctctctgca gattctaatg aattttttag aagttggtgt ttggagattt aagaattggg 2520 aaagtgcttc ttctttagtg agggagcact tgggataagt gagaaaataa ttttttgcat 2580 ttattttaaa ccgatttggg gctgtcatgt tgacttagtc aatcggtgtc tctcagtttg 2640 ttctatgtat cggtgtactg gagtcctata tatatggaga ctctaatggc ataattgtaa 2700 taaaagaaat ttaatttgaa attcaaaata aaaggctaaa gcggccatcc gtataatatt 2760 //