Dbfetch
ID HG316125; SV 1; linear; genomic DNA; STD; VRL; 2735 BP. XX AC HG316125; XX DT 30-JUN-2013 (Rel. 117, Created) DT 30-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus complete segment DNA-A, isolate Lahore XX KW complete genome; complete viral segment. XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2735 RA Khan J.; RT ; RL Submitted (01-MAY-2013) to the INSDC. RL Plant Pathology, Agricultural Sciences, University of the Punjab, Lahore, RL 54590, PAKISTAN. XX RN [2] RA Jahangir Khan J.K.; RT "Characterization of Gemeniviruses"; RL Unpublished. XX DR MD5; 961611e11102aec5cfd64403ce3df6ee. XX CC related sequence HG316126. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="Rumex dentatus" FT /isolate="Lahore" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /collection_date="Sep-2013" FT /db_xref="taxon:223347" FT CDS 127..465 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:S0F338" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:S0F338" FT /protein_id="CDF77349.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLIRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCTRHQSKGLDQQADEQ FT KTQNVQNV" FT CDS 287..1057 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:S0F3T0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:S0F3T0" FT /protein_id="CDF77350.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSATN" FT CDS complement(317..679) FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:S0F3G9" FT /protein_id="CDF77351.1" FT /translation="MVFCLDVFIHPYLSQHIDRFHTESLPYAMCESSSSGNITNTHDFA FT NMRDIVPRFKGLHFTRAFTAPWHVGTSIHSVHSGFSVHRPVGPGLCFGDACNGDNCTSS FT IGAVEVETSAYLRCGR" FT CDS complement(1054..1464) FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:S0F2S1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:S0F2S1" FT /protein_id="CDF77352.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY" FT CDS complement(1184..1603) FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:S0F2Q6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:S0F2Q6" FT /protein_id="CDF77353.1" FT /translation="MQSSSHSKNHSIPVAKTSLSQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1506..2591) FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:S0F339" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:S0F339" FT /protein_id="CDF77354.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKNYI FT AKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDC FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIALPEEEEEHSQEAS" FT CDS complement(2258..2434) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:S0F3T1" FT /protein_id="CDF77355.1" FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQR FT RTSKTTSPKMETF" XX SQ Sequence 2735 BP; 748 A; 590 C; 611 G; 786 T; 0 other; taatattacc gaatgatcaa taaatagggc cgcgcgggcc ctcaaccaat gaaattcacg 60 ctacatggcc tatttagtgc gtgggacttg tttggatgct caccaacaaa tttttaggtc 120 acaaacatgt gggatccatt attgcacgaa tttcccgaaa gcgttcatgg tctaaggtgc 180 atgctagctg taaaatatct ccaagagata gaaaagaact attcaccaga cacagtcggc 240 tacgatctta ttcgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc 300 agcagatatc atcatttcaa cgcccgcatc gaaggtacgc cgacgtctca acttcgacag 360 cccctatgga gctcgtgcag ttgtccccat tgcacgcgtc accaaagcaa aggcctggac 420 caacaggccg atgaacagaa aacccagaat gtacagaatg tatagaagtc ccgacgtgcc 480 aaggggctgt gaaggccctt gtaaagtgca gtcctttgaa tctaggcacg atgtctctca 540 tattggcaaa gtcatgtgtg ttagtgatgt tacccgagga actggactca cacatcgcgt 600 agggaagcga ttctgtgtga aatctgtcta tgtgctggga aagatatgga tggatgaaaa 660 catcaagaca aaaaaccata ctaacagtgt catgttattt ctggttcgtg accgtcgtcc 720 tacaggatct ccccaggatt tcggggaagt gtttaatatg tttgacaatg aaccgagcac 780 agcaacggtg aagaacatgc atcgtgatcg ttatcaagtc ttacggaagt ggcatgcgac 840 tgtgacggga ggaacatatg catctaagga gcaagcatta gttaggaagt ttgttagggt 900 taataattat gttgtttata atcaacaaga ggccggcaag tatgagaatc atactgaaaa 960 cgcattaatg ttgtatatgg cctgtactca cgcatcaaat cctgtatatg ctactttgaa 1020 aatccggatc tacttttatg attcggccac aaattaataa atatccagtt ttatatcata 1080 cgaagtccat acatcaattg tttgctccaa tacattatcc aatacatgat aaactgctct 1140 tattacatta taaattccta tgacacctaa catatccagg tacttaagga cctgggtttt 1200 gaagactctc aagaaaatcc caatctgagg gcgtaagccc gtccagattt tgaaagttag 1260 aaaacacttg tgaagtccca gggctttccg caggttgtgg ttgaactgta tttgaatctt 1320 gattatgtcg tgctgtgtta ggaagggcct gctgtcgtgt ttcaaaattt tgaaatacag 1380 gggatttcga atttcccagg tatatacgcc actctctgct cgatccgcag tgatgtattc 1440 ccctgtgcgt gaatccgtga tcatggcagt tgatcgatat gtaatacgaa caaccacacg 1500 gtagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgggagagc gatgttttcg 1560 cgaccggaat agagtggttc ttcgagtgtg atgaagactg cattcttgat tgcccactgc 1620 ttcagtgctg catttttttc ttcatccaga tattccttat agctgctgtt tggaccttta 1680 ttgcacagga agatagtggg aattccacct ttaatcatga ccggctttcc gtacttcgtg 1740 ttgctttggc agtcacgctg ggcccccatg aattctttaa agtgctttag atagtgggga 1800 tcaacgtcat caatgacgtt gtaccaggca tcattgctat agacctttgg gctcagatca 1860 agatgtccac acaagtaatt gtgtggtcct aagcaccgag cccacatcgt tttgcccgtc 1920 ctactatccc cctctatgac tatgcttatg ggcctaaaag gccgcgcagc ggcacacaca 1980 acattagacg agacccaatc gacgaggtct gccggaactc tgtcgaagga tgaaattgaa 2040 aatggagaaa cataaacctc ggaaggaggt tgaaaaatac gatctaaatt ggtatttaaa 2100 ttgtgaaact gcagaacgta atcttttggg gctaattcct ttaatactct caaagcatcg 2160 tctttatttc ccgtgttaat cgcctgggca tatgcatcgt tcgccgtttg ttgaccacca 2220 cgggcagatc gtccatcgat ctggaaaaca ccccattcta gaacgtctcc atctttggcg 2280 atgtagtttt tgacgtccga cgctgattta gctccctgaa tgttcggatg gaaatgtgct 2340 gaccgacttg gggaaaccaa gtcgaagaat ctgttatttt tgcactggaa tttcccttcg 2400 aattggatga gaacatggat atgcggagac ccatcttcgt gaagctctct acagatcttg 2460 atgaatttct tcttcgtcgg ggtttctagg gtttgcaatt gggagagtgc ctcttcttta 2520 gttagagagc actttggata tgtgaggaaa tagtttttgg catttactct aaaacgacgt 2580 ggcgaagcca taaaacttgt tgattcggcg ggtaagacaa aagattgatc cctcaactta 2640 cgttttccct atatatatat atgattggtg tctggagtac tttaattcaa attccctacc 2700 atatggcatt attgtatcca ttcgtaataa agcgg 2735 //