ID   HG313782; SV 1; circular; genomic DNA; STD; VRL; 2586 BP.
XX
AC   HG313782;
XX
DT   13-JUN-2013 (Rel. 117, Created)
DT   12-MAY-2014 (Rel. 120, Last updated, Version 2)
XX
DE   Chickpea chlorotic dwarf virus complete genome, strain PK/Lod/Gher-MV27B/09
XX
KW   complete genome.
XX
OS   Chickpea chlorotic dwarf virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2586
RA   Ilyas M.;
RT   ;
RL   Submitted (20-MAY-2013) to the INSDC.
RL   Ilyas M., Donald Danforth Plant Science Center, IICI Trait Improvement Lab,
RL   975 N Warson Road, Saint Louis, Missouri, 63132, USA.
XX
RN   [2]
RX   DOI; 10.1007/s00705-013-1911-4.
RX   PUBMED; 24212888.
RA   Manzoor M.T., Ilyas M., Shafiq M., Haider M.S., Shahid A.A., Briddon R.W.;
RT   "A distinct strain of chickpea chlorotic dwarf virus (genus Mastrevirus,
RT   family Geminiviridae) identified in cotton plants affected by leaf curl
RT   disease";
RL   Arch. Virol. 159(5):1217-1221(2014).
XX
DR   MD5; dada3d1e3cde72aaca508731674a7368.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2586
FT                   /organism="Chickpea chlorotic dwarf virus"
FT                   /host="Gossypium hirsutum"
FT                   /strain="PK/Lod/Gher-MV27B/09"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Lodhran"
FT                   /isolation_source="host leaf"
FT                   /collected_by="Muhammad Ilyas"
FT                   /collection_date="2009"
FT                   /clone="MV27B"
FT                   /db_xref="taxon:463360"
FT   CDS             134..412
FT                   /gene="mp"
FT                   /product="movement protein"
FT                   /db_xref="GOA:W0U170"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:W0U170"
FT                   /protein_id="CDF72410.1"
FT                   /translation="MERILYNLFPAYTNYTYDPPPENTDSKGPAQTDFEKVVIALIIIL
FT                   VSVGVFYLAYTLFLKDCILLFKAKKQRTTTEIGFGQTPARNPDRPQP"
FT   CDS             425..1162
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /db_xref="GOA:S0F2F1"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:S0F2F1"
FT                   /protein_id="CDF72411.1"
FT                   /translation="MATMSWGIRKKRSERQSKAKGKASSSYVPRSVSTRRESLQVATFS
FT                   WTSSGSGVKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFLAKNTVYLDPSHYPKVFK
FT                   CPFTFWLVYDKTPGASVPGTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWQVMIES
FT                   NGVDPAKAQSSSYYGPGPCNQVKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA
FT                   PSQKSDVYVNGYFRVYFKSVGNQ"
FT   CDS             complement(1321..1755)
FT                   /gene="rep A"
FT                   /product="Rep A protein"
FT                   /db_xref="GOA:S0F2N4"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:S0F2N4"
FT                   /protein_id="CDF72412.1"
FT                   /translation="MDGRSNQDERRPGTRVPSLYICGPTRTGKTTWARSLGRHNYWNGT
FT                   IDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTN
FT                   RDEDWIPCMSEHQKEYFTDNCRIHYMDDDETFIARESSSH"
FT   CDS             complement(1533..2411)
FT                   /gene="rep"
FT                   /product="Rep protein"
FT                   /db_xref="GOA:S0F3M5"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:S0F3M5"
FT                   /protein_id="CDF72413.1"
FT                   /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL
FT                   GVASELHQDGTTHYHALVQLDKRPCIRDPSFFDFEGNHPNIQPARNSKQVLDYISKDGD
FT                   IKTRGDFRDHKVSPRKSDARGRTIIQTATSKEEYLHMIKEEFPHEWATKLQWLEYSANK
FT                   LFPPQPEPYVSPFTESDLRCHEDLQQWRDTHLYQVSIDAYTLVHQVSIEQAQSDLEWMA
FT                   DLTRTREGLELESPASTSVDQHVQGRPPGPEVSGDTIIGMEPSTSPRTTNTPLTMSLTT
FT                   SPSNSSHYGSN"
XX
SQ   Sequence 2586 BP; 705 A; 500 C; 632 G; 749 T; 0 other;
     acccggcgtg gcccacctta tcgcgagcgc tttacgcgcg agcggtctgg attaaaagta        60
     gaaaaagttc ccgccactag ggtttgtcta aactttagct ttataaaagg cgcactaatg       120
     cgtacattgt acgatggaac gtattctgta taaccttttc ccggcgtaca cgaattatac       180
     gtacgatcct cctccggaga atacggattc caagggaccc gctcaaacgg atttcgagaa       240
     ggtggttatc gccctgataa ttattctggt aagcgttggt gtgttctatc tggcttatac       300
     tttgttcttg aaggattgta tccttctgtt taaggcgaag aagcaaagga ccaccaccga       360
     aatcgggttt ggtcaaaccc cggctaggaa tccggatcgg cctcaaccgt aggcggggtt       420
     cattatggca actatgtcgt ggggaatcag gaagaagcgg agcgaaaggc agtcgaaggc       480
     gaagggtaag gcttcgagtt catatgtgcc cagatctgtg tctaccagga gggaatcgtt       540
     gcaggtggcg accttttcct ggacgagttc tggttcagga gtaaagttct ctactggtgg       600
     tgctgcgtac cttgtgagta attttccaca gggtgccaac gataactgtc gtcacaccaa       660
     caagactgta ttatataaat tcttagctaa gaatacagtg tatttggacc ctagccatta       720
     tcctaaggtt tttaagtgtc catttacttt ctggttggtg tacgacaaga ctcctggtgc       780
     cagtgttcct ggtactgggg atatatttga aggtccatca ttgtttcctg ctaatccatg       840
     gacgtggact gtgtctaggg ctgcatgcca tcgttttgtg gtgaagaaaa catggcaagt       900
     gatgatcgag agtaatggag ttgacccagc aaaggcccaa tcaagttcgt attatgggcc       960
     tggaccatgt aatcaggtta agtcttgcaa taagttcttt aagaggttag gtgtgtcaac      1020
     ggagtggaaa aatagttcaa cgggtgatgt tggtgacata aaggaaggag ccctttacat      1080
     tgttggtgct ccttcccaga agtccgatgt ttacgtaaat ggttatttcc gagtgtactt      1140
     caagtccgtt ggaaatcaat aaaaattttt tattatgaat atgtttcatt gtgtgagtag      1200
     atagaaattc aatatattac attacacacg gaaaatacaa aaatacccct aataataaaa      1260
     acacacaaaa cacagaataa aacataacta tagcttaacc ccgtatgagg agaggcacgt      1320
     tcagtgactt gacgattccc gggcaataaa ggtttcatcg tcatccatat aatggatgcg      1380
     acaattgtct gtaaagtatt ccttctgatg ctcggacata caaggaatcc aatcctcatc      1440
     tctatttgtt aaaattattg aagggacacc accttttatt ttcttctttt ttccatattt      1500
     agggttgaca gtaaaatcga actggcaacc tattaattgc ttccataatg ggacgaattt      1560
     gaaggggatg tcgtcaatga cattgtaagt ggcgtgttcg tcgtacgtgg tgaagtcgat      1620
     ggttccattc caataattgt gtcgcccgag acttctggcc caggtggtct tccctgtacg      1680
     tgttggtcca cagatgtaga ggctggggac tctagttcca ggccttctct cgtcctggtt      1740
     agatcggcca tccattcaag gtcagattga gcttgctcta ttgaaacttg atggacaaga      1800
     gtgtaggcgt caatgcttac ttggtacagg tgtgtgtctc tccattgttg tagatcttcg      1860
     tggcagcgga gatctgactc agtgaacggc gacacatatg gttcaggttg tggagggaat      1920
     agcttatttg cggagtattc aagccattga agcttggtag cccattcatg agggaattct      1980
     tctttgatca tgtgaagata ttcctcctta gacgttgcag tctggataat agttctccct      2040
     cgtgcgtcag atttgcgagg agagacctta tgatctcgga aatctcctct ggtcttaata      2100
     tctccgtcct ttgatatata atcaaggacc tgtttagagt ttcgagctgg ttggatatta      2160
     gggtggtttc cttcaaaatc aaaaaaagaa ggatccctaa tacaaggtct tttatcaagc      2220
     tgcacaagag catgataatg ggttgtgcca tcttgatgaa gctcagaagc aacaccaagg      2280
     aagaaaataa gaaaaggtgt gagtttctcc cagagaaact cgaataaatc atctctttga      2340
     gatgaacatt tagggtaggt aaggaaaaca tattttgatt ggaatctgaa gttcttgtta      2400
     gctgaaggca tgtttgttgt gactcaaggg gttggcctca aactctatct tataacccgg      2460
     cgtgaggcag tgaggcaggg gtattttggt catttagact aagataagga taacgtcaaa      2520
     tcaaacaact taaacatgaa gtaacgcgga aagcgaccaa gggggcccac gccggaattt      2580
     aatatt                                                                 2586
//