ID HF679486; SV 1; linear; genomic RNA; STD; VRL; 5983 BP. XX AC HF679486; XX DT 18-JUN-2013 (Rel. 117, Created) DT 02-OCT-2014 (Rel. 122, Last updated, Version 2) XX DE Citrus vein enation virus, isolate VE-1, complete genome XX KW complete genome. XX OS Citrus vein enation virus OC Viruses; Riboviria; Luteoviridae; Enamovirus. XX RN [1] RP 1-5983 RA Vives M.; RT ; RL Submitted (18-FEB-2013) to the INSDC. RL Vives M., Proteccion Vegetal y Biotecnologia, Instituto Valenciano de RL Investigaciones Agrarias, Crta. Moncada-Naquera Km 4.5, E-46113, SPAIN. XX RN [2] RX DOI; 10.1094/PHYTO-03-13-0068-R. RX PUBMED; 23718835. RA Vives M.C., Velazquez K., Pina J.A., Moreno P., Guerri J., Navarro L.; RT "Identification of a new enamovirus associated with citrus vein enation RT disease by deep sequencing of small RNAs"; RL Phytopathology 103(10):1077-1086(2013). XX DR MD5; 939c36e0682c005bb3ffcfdc96da4037. XX FH Key Location/Qualifiers FH FT source 1..5983 FT /organism="Citrus vein enation virus" FT /host="Citrus sp." FT /isolate="VE-1" FT /mol_type="genomic RNA" FT /country="Spain:Castellon" FT /db_xref="taxon:1301220" FT 5'UTR 1..207 FT CDS join(208..2202,2202..4178) FT /transl_table=1 FT /ribosomal_slippage FT /product="replicase polyprotein" FT /note="ORF 1 and ORF 2; translated by -1 frameshift" FT /db_xref="GOA:S0EQ55" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:S0EQ55" FT /protein_id="CCU64232.1" FT /translation="MIKECLATMSSPTTTFSLSTLLTGWELAYLLSLIMLGWAVLHRRE FT RHARNQLAWRFPTSYYVLLLCYGVTLVAAGGVAGSRLRPSLCHAGSTSLGLPISCGTLE FT FVPLESGLSSPNLTGGMTDVGRSPSLTVRYSPLFHVGSWLQVARQNTTVRVTLRLSFSY FT LVTAQNTLSGWKRNGLAGMSLLLGCLEPIRMLPAYSVYCLTEALLLTAKCLENAILSWM FT LLLASALWQLARINPLRTAIWMIVLSLGSFAYENRICRAMIQIILAPVYILPSLGLKFL FT RVASILPTLLLNWTKNLLIFWLTFTSMMTRRILVGSLMMVRVILRIPLLPIILMKKILG FT ILMMMTPSVETPVADPRLRFVNRERSVSLEGQARQVCLPAVPPKGVIGKVLNANNIQIG FT YFSCVKLMGGTDGIMVPIHVYEDAHMFMGNNLALSKDAFTVVYRDVEGDVLILKGPPNY FT RVVLGVKPRLLLTANFARLGFHSLYFERDGQWKVQSANVKGAEDGFLAVVSQTLPGDSG FT LPLFDTKHRICAMHIGHYGEKRPENMATVVLPIRGFSVPDTEVFKPQVKTTESLYEDDK FT IFDLVEDLEKEIDEGVVRDLEFEGQHYKTVIGKTSIALLKEAEFLDHMKQVGRDAVKGK FT QPWSDWLDDEEDERECLRPIADTKSKYQQPFKLRAPVRSGKTKAAGRCLHLGNEDCCWC FT RCLPGTPTQGIQNSLHQGGSKAAGKVEARRKVRSDESRGSSGQTCRGKPKEEKLPKGKE FT SSTSCSERTSAHENGRGIQTGGQEIGRAREGSAKEECAQGTTSLEVLFDGFYHWLPELC FT GSSEKAWEQMAQYERPHQPDERSNGGTPLYNDERRVNLLGFCKVGSCDFTKWKSPTKEL FT SEWGFHRAQASTLLQACQESYGWPDTGAEAELSSLRYQAAKRAAAQTKALTPSKAARWS FT VIQRTCVAYGVTRRHAPRWTRTMNRADARFYFCEAVRSLKPDSGSGLPFAAFYNRTTHS FT DWCYDDASFEALFDLVWARLGRLRSGSFRNPVQAVQDGLCDPIRLFVKLEPHKRAKIEQ FT KRFRLIASVSLADQLVARMLFQEQNQAELDMYMYIPSKPGLGFSKDSQVLEFTKSIAYL FT AHTTPEDLVNNWSEHLIPTDCSGFDWSVPMWLLEDDLAVRNELTIDCSDDLIKMRSEWL FT RCLGQSVLVLSNGMMVAQLEPGIQKSGSFNTSSTNSRMRYMASLYAGASWAVTMGDDAL FT ESVDSDLSQYALLGLICERAEEFDFCSHIFKAPSVVVPKNIHKMIFGLLSGVSPISPVQ FT EARIQWLQAFQSISEEMRHMPAEFWEEFRTAIGILGDGW" FT CDS 208..2916 FT /transl_table=1 FT /product="100 kDa protein" FT /note="ORF 1" FT /db_xref="GOA:S0EQA6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:S0EQA6" FT /protein_id="CCU64233.1" FT /translation="MIKECLATMSSPTTTFSLSTLLTGWELAYLLSLIMLGWAVLHRRE FT RHARNQLAWRFPTSYYVLLLCYGVTLVAAGGVAGSRLRPSLCHAGSTSLGLPISCGTLE FT FVPLESGLSSPNLTGGMTDVGRSPSLTVRYSPLFHVGSWLQVARQNTTVRVTLRLSFSY FT LVTAQNTLSGWKRNGLAGMSLLLGCLEPIRMLPAYSVYCLTEALLLTAKCLENAILSWM FT LLLASALWQLARINPLRTAIWMIVLSLGSFAYENRICRAMIQIILAPVYILPSLGLKFL FT RVASILPTLLLNWTKNLLIFWLTFTSMMTRRILVGSLMMVRVILRIPLLPIILMKKILG FT ILMMMTPSVETPVADPRLRFVNRERSVSLEGQARQVCLPAVPPKGVIGKVLNANNIQIG FT YFSCVKLMGGTDGIMVPIHVYEDAHMFMGNNLALSKDAFTVVYRDVEGDVLILKGPPNY FT RVVLGVKPRLLLTANFARLGFHSLYFERDGQWKVQSANVKGAEDGFLAVVSQTLPGDSG FT LPLFDTKHRICAMHIGHYGEKRPENMATVVLPIRGFSVPDTEVFKPQVKTTESLYEDDK FT IFDLVEDLEKEIDEGVVRDLEFEGQHYKTVIGKTSIALLKEAEFLDHMKQVGRDAVKGK FT QPWSDWLDDEEDERECLRPIADTKSKYQQPLNCEPQYALGKQKRQDGASTSETRIVVGA FT VACPVPQPKESKIPSTKAVPKLPGKSKRAERFAQMSPEEAAAKRAAENRRRRNSRKGKK FT VPPLAVKEPLPMKMEEVSKLVDKKLAELVKVRPRRSVPKAQLASKSSSTASTTGSQSYV FT VPPRRRGNKWRNTSAPINPTNAQTGGRPYIMTSEGLTFLDSVKSAPVTLQNGKAPPKNS FT QNGDSIELRPQRSYKPVRKAMAGQTQVQRPN" FT CDS 219..1283 FT /transl_table=1 FT /product="39 kDa protein" FT /note="ORF 0" FT /db_xref="UniProtKB/TrEMBL:S0EQ52" FT /protein_id="CCU64234.1" FT /translation="MPCYHVIPYDYFQPIHSSNWLGASLLALINYVGMGCPTQEGTPCE FT EPTCVALPYVLLCALALLWGHPRSCGRRGGVSLEALTLPRGFNIVGPPDFLWYFRICAA FT RIGLIIPQSYWRDDGRRAIPLTHCALFTSLPCWLMAASGKAEYHCQGYVAPELQLPGDG FT PEHTVWVEEKWACWHELIVGLLGTHTNVASILRVLPDGGVTPHSQVLGKRNLIVDAFTS FT ISTMAVGTDQPPPNRYMDDCSLTRLFCLREPYLSGYDTDNFSPGLHITLPWPEIPEGGE FT YLAHSFAELDQEFADLLAHLHVHDDEEDLGWFSDDGEGDIENPPAPHNTDEEDFGDSDD FT DDSIGGNAGSGPEA" FT CDS 4301..5785 FT /transl_table=1 FT /transl_except=(pos:4874..4876,aa:OTHER) FT /product="CP readthrough protein" FT /note="ORF 3 and ORF 5; tranlated by in-frame readthrough FT of ORF 3 stop codon" FT /db_xref="GOA:S0ER74" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:S0ER74" FT /protein_id="CCU64235.1" FT /translation="MVSRNQRRRNRPRRMRRRQAPNRVVVMGNNPTRSRRRNAPARRRR FT AVNRSTGEMRPYHLYGLKCNDKGYLTFGPSGQTPSLGGGILKAFSEYKITQLRVQWKAQ FT ASSTAAGSMAIQIGLGTSLTALDNRAISFKLTSSGQRVFTARDLGGDGRMYNSSNEDQF FT RLAYQGNGDSTLGGDLLCFFRLETRLPKXVDADPPSPPSPEPSPEPPPQPPAPTPARCR FT FWGYEGIPSVSVSSAENDRDVEVRALSTIDLYKFEDENWSTVHLRAGYSTNDRVHAQPY FT IVFPIEKGEFDVYIECEGFQAVKSIGGKADGSWEGLIAYSTSDSGWLVSEYVGVSITKY FT QSSTAFVGGHPDTRLNDCSFKQDRAVECDIVCSFRLSADSDNAKWLLYAPWIQKASEYN FT YIVSYGAYTEKICELGSISVNIDEVNEQQGPSPASKRWGRRRLDRERQLVKTLVNQPSS FT DLEEAKETGSLRAPGWRERVEKEKKKEDKPSRFSWR" FT CDS 4301..4876 FT /transl_table=1 FT /product="coat protein" FT /note="ORF 3" FT /db_xref="GOA:S0ERJ8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:S0ERJ8" FT /protein_id="CCU64236.1" FT /translation="MVSRNQRRRNRPRRMRRRQAPNRVVVMGNNPTRSRRRNAPARRRR FT AVNRSTGEMRPYHLYGLKCNDKGYLTFGPSGQTPSLGGGILKAFSEYKITQLRVQWKAQ FT ASSTAAGSMAIQIGLGTSLTALDNRAISFKLTSSGQRVFTARDLGGDGRMYNSSNEDQF FT RLAYQGNGDSTLGGDLLCFFRLETRLPK" FT 3'UTR 5786..5983 XX SQ Sequence 5983 BP; 1467 A; 1438 C; 1579 G; 1499 T; 0 other; atataagcta taaaagaaaa gtgcgtttac gcttccttct ttgagcttat ataagtcgta 60 tgttttgtgc cttgatttcg ttgactgtcc agcttgttct gttgactatc gcatacgctt 120 tcggcactct tttgtggtct tacatcttcg gactctcggt ttctcctata ctcctagaga 180 tcgaaagact gcttctgctg tggtagaatg atcaaggaat gccttgctac catgtcatcc 240 cctacgacta ctttcagcct atccactctt ctaactggtt gggagctagc ttacttgctc 300 tcattaatta tgttgggatg ggctgtccta cacaggaggg aacgccatgc gaggaaccaa 360 cttgcgtggc gcttccctac gtcctattat gtgctcttgc tttgctatgg ggtcaccctc 420 gtagctgcgg gaggcgtggc ggggtctcgc ttgaggccct cactttgcca cgcgggttca 480 acatcgttgg gcctcccgat ttcttgtggt actttagaat ttgtgccgct cgaatcgggc 540 ttatcatccc ccaatcttac tggcgggatg acggacgtag ggcgatcccc ctcactcact 600 gtgcgctatt cacctctctt ccatgttggc tcatggctgc aagtggcaag gcagaatacc 660 actgtcaggg ttacgttgcg cctgagcttc agttacctgg tgacggccca gaacacactg 720 tctgggtgga agagaaatgg gcttgctggc atgagcttat tgttgggttg cttggaaccc 780 atacgaatgt tgccagcata ctccgtgtac tgcctgacgg aggcgttact cctcacagcc 840 aagtgcttgg aaaacgcaat cttatcgtgg atgcttttac tagcatcagc actatggcag 900 ttggcacgga tcaaccccct ccgaaccgct atatggatga ttgttctctc actaggctct 960 tttgcctacg agaaccgtat ctgtcgggct atgatacaga taattttagc cccggtttac 1020 atattaccct cccttggcct gaaattcctg agggtggcga gtatcttgcc cactcttttg 1080 ctgaactgga ccaagaattt gctgatcttt tggctcacct tcacgtccat gatgacgagg 1140 aggatcttgg ttggttctct gatgatggtg agggtgatat tgagaatccc cctgctcccc 1200 ataatactga tgaagaagat tttggggatt ctgatgatga tgactccatc ggtggaaacg 1260 ccggtagcgg acccgaggct tagattcgtt aatcgtgagc ggtccgtgtc attggagggg 1320 caagccaggc aagtatgtct ccccgctgta cccccgaaag gggttatagg aaaggttctg 1380 aatgctaata acattcagat cgggtacttt tcctgtgtaa aactcatggg aggtacggat 1440 gggataatgg ttcccatcca cgtttatgaa gacgcccaca tgtttatggg caacaacctc 1500 gccctatcca aggatgcatt cacggttgtg taccgtgatg tggaagggga tgtcctaatt 1560 ttgaaaggac ccccaaatta tagggttgta ttaggagtaa aaccccgact cctacttact 1620 gcaaacttcg cccggctggg attccactct ctctatttcg aaagagatgg acagtggaaa 1680 gtccaatcag ccaatgtaaa aggggcggag gatggtttct tggccgttgt ttcccagaca 1740 cttcctgggg actccggact tcccctcttc gacacaaaac accgtatttg tgccatgcat 1800 attggccatt atggtgagaa gagaccggag aatatggcca cggttgttct tcctatcagg 1860 gggttttctg tccctgatac tgaggttttc aagccccaag tcaagactac tgagtccttg 1920 tatgaggatg ataagatttt cgacttagtc gaggatcttg agaaggaaat tgacgagggg 1980 gtggtccgag acttagagtt cgagggccaa cattataaga ccgtcatcgg taagacttcc 2040 atagccctgc tcaaggaggc tgagttcctc gatcatatga agcaggtcgg cagggatgcc 2100 gtaaaaggga agcagccatg gagtgattgg ctagatgacg aagaggatga gcgggaatgc 2160 ttgcgcccca tcgctgatac taaatccaag tatcagcagc ctttaaactg cgagccccag 2220 tacgctctgg gaaaacaaaa gcggcaggac ggtgcctcca cctcggaaac gaggattgtt 2280 gttggtgccg ttgcctgccc ggtaccccaa cccaaggaat ccaaaattcc ctccaccaag 2340 gcggttccaa agctgccggg aaagtcgaag cgcgccgaaa ggttcgctca gatgagtccc 2400 gaggaagcag cggccaaacg tgccgcggaa aaccgaagga ggagaaactc ccgaaaggga 2460 aagaaagttc cacctcttgc agtgaaagaa cctctgccca tgaaaatgga agaggtatcc 2520 aaactggtgg acaagaaatt ggccgagctc gtgaaggttc ggccaaggag gagtgtgccc 2580 aaggcacaac tagcctcgaa gtcctcttcg acggcttcta ccactggctc ccagagctat 2640 gtggttcctc cgagaaggcg tgggaacaaa tggcgcaata cgagcgcccc catcaacccg 2700 acgaacgctc aaacgggggg acgcccctat ataatgacga gcgaagggtt aaccttcttg 2760 gattctgtaa agtcggctcc tgtgacttta caaaatggaa aagccccacc aaagaactct 2820 cagaatgggg attccatcga gctcaggcct caacgctctt acaagcctgt caggaaagct 2880 atggctggcc agacacaggt gcagaggccg aactgagctc tttgcggtac caagcagcca 2940 aacgggcggc tgctcaaaca aaagccctaa ctccaagcaa agccgcgcgt tggagtgtta 3000 tacagcgcac ctgtgttgca tatggtgtca cacgacgcca tgctccccgt tggacacgca 3060 caatgaatcg ggctgatgct cgattctatt tctgtgaagc tgtccgaagt ctgaaaccag 3120 attctggaag tggtcttcct ttcgctgcgt tctataatag aacaactcac agcgactggt 3180 gctacgatga tgcctctttt gaggcgttgt ttgacctagt ctgggcccgt ttgggtagac 3240 ttcgttcggg gtcatttcgc aacccagttc aggccgtgca agacggcctt tgtgacccta 3300 tccgcctgtt tgtgaaactc gaacctcaca aacgtgctaa gattgagcag aagcgatttc 3360 gtttaattgc ttcagtatcc ttggcggatc agttggtcgc ccggatgctc ttccaggaac 3420 aaaaccaggc agagcttgac atgtacatgt acattccttc caagccgggg cttggattct 3480 caaaggatag tcaagttctg gagtttacga agagcatagc ctatcttgcc cacaccaccc 3540 ccgaagacct agtgaataac tggtcggaac acttaatccc aactgactgc tcgggatttg 3600 actggagtgt tccaatgtgg ttgttggagg atgatcttgc agtccgcaac gagttgacca 3660 tcgactgttc cgacgacctc attaagatga ggtccgagtg gcttcgatgc ctagggcaga 3720 gcgtacttgt tctgtcaaat ggaatgatgg ttgcccagct cgaaccggga atccagaaaa 3780 gtgggagttt taatacttcc tcaacgaatt ctcggatgag gtatatggcg tcactctacg 3840 ccggagcttc gtgggccgtc acaatgggtg acgacgcgtt ggagtcagtt gattctgact 3900 tgtcccagta tgccttactg ggtttaatat gtgagcgtgc tgaagagttc gacttttgtt 3960 ctcacatctt taaggcgccc tctgtagtcg tgccgaagaa tattcataag atgatcttcg 4020 gtctcctttc tggagtgtct ccgataagtc ctgttcaaga ggcaaggata caatggctgc 4080 aggccttcca gtcaatctct gaggagatga ggcatatgcc agcggaattt tgggaagagt 4140 tccgcaccgc tattggcata ttaggggacg ggtggtagaa ggttaccacc ctttgaagag 4200 ggatgccccc cgaaagggga ccatgaattg acatggtctt ggaacgccgt aatgctggac 4260 ctggctagag ataaaatcta taaataatta cggcgtatct atggtgagtc gcaatcaaag 4320 acgaagaaat cgtccacgca gaatgcgaag aagacaggca ccgaataggg tcgtggtgat 4380 gggcaacaac cccacacgtt cccgaagacg caacgccccc gctcgtcggc ggcgtgcggt 4440 taatagatca accggagaga tgcgtcctta ccacttgtat gggcttaaat gcaacgacaa 4500 gggttatctc acttttggtc cttctggaca aaccccatct ttgggtggtg gtatcctaaa 4560 ggccttctct gagtataaaa taacccagtt gagagtacag tggaaggcgc aggcttcttc 4620 gactgccgca ggttccatgg ccattcaaat tggcctaggt acaagcctga ccgctctgga 4680 caaccgggct atctcattta agttgaccag ttcggggcag cgagtgttca ccgcccgaga 4740 tctcggcggt gacggtagaa tgtataactc ctctaacgag gaccaattcc gccttgccta 4800 ccaggggaat ggagattcta ccctcggagg ggatctatta tgtttctttc gcctggaaac 4860 gcgactgccc aaataggtag acgcggaccc ccccagtcca ccatctccgg aaccttctcc 4920 ggagccccca ccccaaccac cagctccgac accggcgaga tgtcgcttct ggggatacga 4980 aggtatccct agtgtaagtg tgtcgtctgc tgaaaatgac cgagatgtgg aagtgcgtgc 5040 actttcaaca atcgacctct ataaatttga ggacgaaaat tggtcaacag tccatctgcg 5100 cgctgggtat agtacgaacg atcgtgtaca tgcgcaacct tacatagtct ttcccattga 5160 aaagggagag ttcgatgttt acatcgagtg tgagggtttc caggccgtta aatctatcgg 5220 cggaaaggca gatgggagct gggaaggctt aatagcttat agcactagtg atagtggctg 5280 gttggtgagc gagtatgttg gtgtttctat aacgaaatac cagagctcaa ctgcttttgt 5340 gggcggacac cctgataccc gcctgaatga ttgtagcttc aaacaggaca gggctgtaga 5400 gtgtgacatt gtttgttcat ttagactcag tgccgattcg gataacgcaa aatggttgct 5460 atatgctcca tggatccaga aggcatcgga gtacaattat attgtctcct atggtgctta 5520 tacggagaag atatgtgagc taggctctat aagcgttaat attgacgagg tgaacgaaca 5580 acagggtccg agcccggcgt cgaaacgatg gggtagaaga cgccttgatc gagaaagaca 5640 actcgttaaa actctggtca accagccatc ctctgatctg gaagaggcaa aagaaactgg 5700 ttcattgcgt gctccgggct ggagagagcg cgtcgaaaag gaaaagaaga aggaggataa 5760 accctctcga ttttcctggc ggtgatacgg tttcttatgg gaaagcattg gagttcctgg 5820 aatccaatga caagccgtct ccagggcact agggagtgac gtcccgcact ttatccttgt 5880 ggttgaaaat cactggaact aagctcagtc attaaatgag gaagtatggc taaagaagct 5940 tgatattata atatttaata tcatattctt tgcatacttt tgt 5983 //