ID HF677705; SV 1; linear; genomic RNA; STD; VRL; 7537 BP. XX AC HF677705; XX DT 06-JUN-2013 (Rel. 117, Created) DT 06-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Sebokele virus 1 ORF1 gene for polyprotein, genomic RNA, strain 1 XX KW . XX OS Sebokele virus 1 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Parechovirus. XX RN [1] RP 1-7537 RA Joffret M.; RT ; RL Submitted (05-FEB-2013) to the INSDC. RL Institut Pasteur, Biology of Enteric viruses, 25 rue du Docteur Roux, RL 75015, FRANCE. XX RN [2] RA Joffret M.L., Bouchier C., Grandadam M., Zeller H., Maufrais C., Bourhy H., RA Despres P., Delpeyroux F., Dacheux L.; RT "Genomic characterization of Sebokele virus 1 (SEBV1) reveals a new RT candidate species among the genus Parechovirus"; RL J. Gen. Virol. 0:0(2013). XX DR MD5; 3eec65e3adeb6f593b5c185aa68fea6c. XX FH Key Location/Qualifiers FH FT source 1..7537 FT /organism="Sebokele virus 1" FT /host="Hylomyscus" FT /lab_host="suckling newborn mice" FT /strain="1" FT /mol_type="genomic RNA" FT /country="Central African Republic:Botambi" FT /lat_lon="4.12 N 18.3 E" FT /collection_date="1972" FT /db_xref="taxon:1294177" FT CDS 755..7456 FT /transl_table=1 FT /gene="ORF1" FT /product="polyprotein" FT /db_xref="GOA:S0DHJ0" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:S0DHJ0" FT /protein_id="CCR60600.1" FT /translation="MAANNDTTTSSVLTMAKSAISTLLQDPVKEEQETNADRVSASITT FT NAGNVVQASVAPTMPFAPDFHPGDDYLSMAYTSDTGPTNPTKLIDLRHVHWTTTNNRSH FT EVFRATLPEAFWATTDYPAYGQSRYFAAVRCGFHIQVQLNVNMGTAGCLMVVYLPKTCH FT DNFNTYDFGTFTNFPHVLMNAATTSQADLYIPYINNRNYAKTDSDDLGAVFGFVWSALT FT VPAGSPTQVDVTVFGSLLDLDFQCPRPYGQAINIYNQAPRKRATKATRFKWTRNNIDIA FT EGPGSMNMANVLHTTGSQTIALVGERAYYDPRTAGTTTRVKDLKMISQLYSVFIGNQAV FT PNNQYGYFTWNSNVTSENFIFDNDIVPENLSNLGMMASCYAFWRGSIVCKLTVYASTFN FT KGRLRMAAFPNLGARPSATACKNAVYMVCDLGLNNTFELTVPYTWANWMRPTIGQPICR FT LRIDVMNALTYNSSSPTAVNCILQVRAGDDAEFFIPTGSNFTWQGLTSWGSEMDLVDSL FT DNPTEIVNNVESNIESAHGQAPAVAAGLRSTENDGTLSEQLAVAQPRFLNFQIQDISMF FT AVSHTLVDHFFGRSWLAGQFNYTSQNTTTLQIPFPTTQHGAMARMFAYFSGEVTFHITH FT IGNCYILVTHTYYGNEEGRHRIYDLASNGAISIPPDTQMSLTVPFYSETPLRTVKGSNS FT KTSGLGTLFLRPVGQSGAAAGRITIYASIRCPNFFFPVPAPKRGTARAVLNSRPGHFDQ FT STVEALGMAEDLDSDLLLEQRVDDNLAMALMRAKAFFNRRQGCRSETLLQCGDVESNPG FT PTMELVYKDRGFYKHYGVRVGNAIYHLDSQDILSTAITGQATFDKIEDDGCWLVSQVAD FT LDYFTDKYVNSLVGTKHIFSATQNCETIARDVFGDSSMTQGRALGILGVILLSAGLLSL FT MAVPWDVSSLQQVYNQSLDGDAEGLTLLSQRCMTFFSNAMVETFNNDLVKFIIKILIRL FT LCYIVLYCHAPNLLTTLCLGTLLVMDITTCEVLSASTKALFQSLLDGDVKGLVTRIAES FT MTFARDTKEQAEEMSATFNYATEMVDFARRPMENQGFAEFNTVSTSFRHIEWWLTTFKS FT AYNVLKGIFSPNLEQKAVKWMERREEQIADILNEASEVVVLMKDPKNQRSTEAIQRYFA FT ILERMKILATICLKVAPSTRFSSQCFRMFSELLRINVRVPTNTDLTRMEPVGIWISSEP FT GQGKSFLTHMLTTRLLKSCDLQGIYTNPTGSEFMDGYVGQDVHIIDDAGQNREEKDLAL FT LCQCISSVPFTVPMADLAEKGTFYTSKIVVATTNKMDFSTMVLTDSEALARRFPFNFRL FT RAKVPYCKNNRLNVPDAMAQMADGSCWEISRDQGRTWNSLCMDTLVKEITDFFKARQDA FT LMVWQRKLNQVRNESGLSPLDSMDETIASLERRFGQISNYIRKEIGRCTDDLIEEMEDY FT LCEYDTPFQCFERKQRLRYATAPENIKQWVKKHMVRLKDFLAENKGWFLFFSILSTFLS FT VLTLVYLHYRSKPKEPEKQERAYNPQTQPKKGVRQVLRRRDEPVVFKNEAPYMQDLEHC FT FAQTCYLSSSVTTDVIHCAAVSGTTLVCYGHSEFFVDNAPDLVLHFKGASFAIDGGMIS FT RVSLDGSAMDLVLIKVDKLPIVFKNYTKYYTKTIGRDSLLLWSSPQGRLAMPVTNVHMA FT GNLVTLEGTQTAQTYSYAVSSKRGMCGGLLVTRVDGSYKVLGMHIAGNGSIARAASLHC FT LTQYRNEGVIMSKVFVGHQVFQPSKTSLHPSPLYKAFEIKMEPAVLSPHDPRLEVALPS FT VVKDAASKYRVDVFKPDQKLWMYVLDEVKSAFRSKLGIHSKVTLEQAVLGYSDLSSLDL FT TTSPGTKYVKLGFKKRDLLSLDPFFVHPVLLEDVKQLLAAVYRLEPPRTIFTAFLKDEL FT RKRDKVKNGKTRCIEACSIDYVVAYRVVMSSLYEAIYQSKPQELGLAVGMNPWTDWDAM FT LNSLLPYNYGLDYTSYDGSLSEELMRSAVEVLAYCHEDPDQVMVLHETVLNSEHLVMDE FT IWEVKGGMPSGSPCTTVLNSICNILVCRYLAYSQGPSVECLPIVYGDDVIFSVSEEIDA FT SCLVEQARREFGMEITSSDKSAVPTLLNLEEVEFLKRTTRFFPGTTYKVGALNLSTMEQ FT HIMWMKNLSTFPSQLQSFENELALHGQHVYESYQNVFQEVLKPWKITMEDYDVVVRRML FT FYVFE" XX SQ Sequence 7537 BP; 1947 A; 1705 C; 1743 G; 2142 T; 0 other; gaaagggggc caccctgccc atagggcagg gtccttcttg gctgggtggc tcgtatccac 60 tccatgggtt gtgcctatcc ggtcatcccc ctttccccac agccggtgtg ggttctaatc 120 ggctcctact aaacacctaa gcatcactgc gcctctatct ctcctatcca caggtctaag 180 acgcttggaa taagacatgt gggtgcaata ggaagattag ctagtccaat ctctccttcc 240 agctacgctt ctcccttcga tgagcgtagg gggggccccc acctccctca tctctggata 300 gggctcttgc tacggggctt tcccgtctgg accagcaggc ccactggtgc gcttccattc 360 aagtttagtg tgcattactg tctgaaatat tgctttgcta ggatctagtg tagcgacctg 420 catattgcca gcggacttcc ccacatggta acatgtgcct ctgggcccaa aaggcatgtc 480 tttgaccgta tgcagtacaa ccccagtata ggtcctttct atggcagtat ggatctcagt 540 gatgagtcta tacagaatat ggaagtggtt cggatatgtc agcccgaagg atgcccagaa 600 ggtacccgca gataacctta agagactgtg gatctgatct ggggcccacc accttcgggt 660 gggtagaagc taaccatgcc ttgggttaaa aaacgtctaa gggctgacca gacccggggg 720 atccgggttt tccctatctt gacctactct aatcatggct gccaataacg atacaacaac 780 tagctcggtg ctaaccatgg caaagagtgc tatttccact ctccttcagg atccagttaa 840 ggaagagcag gaaacaaatg ctgatcgtgt ttcagcatcc attacaacta atgctggtaa 900 tgtagttcag gcatctgtgg caccaactat gccatttgct ccagacttcc atccggggga 960 tgactacctc tcaatggcat acacctcaga taccggaccc acaaatccga caaagctgat 1020 tgacttgcgc cacgtacact ggactactac aaataataga tcacatgaag tctttcgagc 1080 tacactgcct gaagcatttt gggccacgac agactatcca gcttacgggc agtcaagata 1140 ctttgctgca gtacgctgtg gcttccacat acaagtacaa ttgaatgtaa atatgggcac 1200 agctggctgt ctcatggtag tctatttgcc taagacttgt catgataact ttaataccta 1260 tgactttggt acatttacta attttccaca tgttttgatg aatgcagcaa caacatctca 1320 ggcagatctc tatataccat atatcaataa caggaactat gccaagactg actcagatga 1380 cttaggagcg gtttttggct ttgtttggag cgctctaact gtgcctgctg gttctccaac 1440 ccaggttgat gttactgtct ttggctcact ccttgacctg gattttcagt gcccgcggcc 1500 ctatggtcaa gccataaaca tctacaatca agcccccagg aagagagcga ctaaggcgac 1560 tcgctttaag tggactagga ataacataga catagccgag gggcctggct ctatgaatat 1620 ggccaatgtt ttacatacaa ctggctccca aacgattgct ttggttggtg aacgggcgta 1680 ctatgatcct agaacagcag gaacaactac aagagttaag gatctcaaaa tgatatccca 1740 actctattct gtttttattg gaaatcaagc agttcccaat aatcaatatg gctattttac 1800 ctggaattca aatgtgacat cagaaaactt tatttttgac aatgatattg tgcctgagaa 1860 tctttccaac ttgggtatga tggcctcctg ctatgccttt tggcggggct ctatagtctg 1920 caaattgaca gtctatgctt caacctttaa caaggggcgc ctaagaatgg cggcctttcc 1980 aaatttggga gcacgtcctt ccgccactgc ctgcaagaat gcggtctaca tggtttgtga 2040 tttaggtctt aataatactt ttgaattgac agtaccttat acttgggcga attggatgcg 2100 acctactata ggccaaccaa tttgtcgttt gaggattgac gtgatgaatg ccctaaccta 2160 caattcctct tcccccacgg cggttaactg tatactgcag gtgcgtgctg gggatgatgc 2220 tgagttcttc attcctacag gctccaattt cacctggcag ggactcacta gttggggtag 2280 tgaaatggac ctggttgact ccctagataa ccctacagaa atagttaata atgtggagtc 2340 aaatattgaa tctgcacatg ggcaagcacc ggctgtggct gcaggactta ggtcaacaga 2400 gaatgatggg acactttccg agcagttggc agtcgcacaa ccacgcttct taaacttcca 2460 aattcaggat atttccatgt ttgcagtctc tcatacctta gttgaccact tctttggtag 2520 gtcctggttg gcgggccaat ttaactacac cagccagaat accacaactc tgcaaatacc 2580 ctttccaact acacagcatg gtgccatggc caggatgttt gcctactttt ctggcgaggt 2640 tacctttcat ataacccata ttgggaactg ttatatcttg gttactcaca catattatgg 2700 gaatgaggag ggtaggcatc gcatctatga cctggcctct aatggagcca tttctatccc 2760 accagataca cagatgtctc tgactgttcc cttctactct gaaacaccct tacggactgt 2820 taagggctcc aattccaaga cctctggctt gggcacactt ttcttgcgtc ctgtgggaca 2880 atcaggagct gcagctggcc gaataacaat ttatgcgtcc atcaggtgcc caaacttctt 2940 ctttccagtt ccagcaccca aaagaggaac agctagagca gttctcaact cccgcccagg 3000 tcattttgac caaagtacag ttgaagccct gggtatggct gaggacttgg actctgacct 3060 cctcttggaa cagagggttg atgacaactt ggctatggcg ctaatgcggg caaaggcatt 3120 ctttaatagg agacagggct gtcggtctga gaccttattg cagtgtggcg atgttgagtc 3180 caaccctggc cccaccatgg aattggtcta caaggatcgt ggcttctata aacactatgg 3240 cgtccgggtt ggtaatgcca tctaccactt ggactcccag gatatacttt caacagctat 3300 taccggccag gccacttttg acaaaataga ggatgatggc tgttggcttg tctcacaagt 3360 agcagacttg gactacttca cagataaata tgttaatagc ttggttggta ccaagcacat 3420 cttttctgct acacaaaatt gtgaaaccat tgcaagggat gtttttggcg attcatccat 3480 gacccagggt agagcccttg gtattttagg tgtgattctc ttgtctgcag gcctcttgtc 3540 cttgatggcg gtgccctggg atgtttcatc cttgcaacaa gtctacaacc agtctttgga 3600 tggcgatgcg gagggcctaa cgctcctaag tcagcgctgc atgactttct tttctaatgc 3660 catggttgaa acctttaata atgatttggt taaatttatt attaagattt tgattaggct 3720 tctttgctat atagttctct actgtcatgc tccaaatttg cttactacac tgtgcttggg 3780 tacactctta gtaatggata taacaacctg tgaggtcttg tcagcatcaa ccaaagctct 3840 ctttcaatcc ttgcttgatg gtgatgttaa gggcctggtc acgcggatag ccgaatctat 3900 gacttttgcc agggacacta aagaacaggc tgaagagatg agtgccactt ttaactatgc 3960 aacagagatg gttgattttg cccgacggcc aatggagaac caaggctttg ctgagtttaa 4020 tacagtctcc acctcctttc gccatattga atggtggttg accaccttta aaagtgccta 4080 taatgtcctg aaagggatat tttcaccaaa cctagaacag aaggcagtca aatggatgga 4140 gcgtagagaa gaacagattg ctgacatttt gaatgaggca tcagaggttg ttgtcctgat 4200 gaaagacccc aagaaccagc gttccactga ggcaatccaa cgctattttg ctattttaga 4260 gagaatgaaa atattggcta ctatctgctt gaaggtggca ccctctactc gcttctcaag 4320 tcagtgcttt aggatgtttt cggagttgct tcgtattaat gttagagtgc caaccaatac 4380 cgacttgacc cggatggagc ctgtgggcat ctggataagt tctgagccag ggcagggtaa 4440 atcctttttg acccacatgt tgaccacccg tcttctcaaa agctgtgact tacaaggcat 4500 ctacaccaac ccaactggct ccgagtttat ggatggctat gttggacaag atgtgcatat 4560 aattgatgat gctggacaaa atagagaaga aaaggactta gccttgttgt gccaatgtat 4620 ctcatcagta ccctttacgg taccaatggc tgatcttgct gaaaagggaa ccttttacac 4680 gagtaagatt gtggtggcta ctacgaacaa gatggacttt tccactatgg tcttgacaga 4740 cagtgaggca ttggccaggc ggttcccttt taacttccgt cttcgtgcca aggttccata 4800 ttgtaagaat aacaggctaa atgtgccgga tgccatggcc caaatggctg atggttcctg 4860 ctgggagatc tcgcgcgatc aaggtcggac ctggaactca ctctgcatgg atacattggt 4920 caaggaaata acagacttct ttaaagcacg ccaagatgct cttatggtct ggcagagaaa 4980 attaaaccaa gtgagaaatg agagcggcct atcccctctg gattcaatgg atgaaaccat 5040 agctagcttg gaacgccgct ttgggcaaat ttctaattac attagaaaag aaattgggcg 5100 ttgcacagat gacctaattg aagagatgga agactatctt tgtgaatatg ataccccttt 5160 tcagtgcttt gagcgcaagc agcgcttgag gtatgcaaca gccccagaaa atattaagca 5220 atgggtgaag aaacatatgg tgagattgaa agactttctg gcagaaaata agggctggtt 5280 tctcttcttc tctattctct ccacattttt atcagtcttg accttggtct acttgcacta 5340 tcgaagtaaa ccaaaggaac cagaaaaaca ggagcgtgcc tacaaccctc aaactcaacc 5400 taagaagggt gttaggcaag tgcttaggcg gagagatgag ccagtggttt ttaaaaatga 5460 ggcaccctat atgcaggatc tagagcattg ctttgctcag acgtgctact tatctagttc 5520 tgtaacaaca gatgtcatcc attgtgcagc agtttctggg acaacccttg tctgctatgg 5580 tcattctgag ttctttgtgg ataatgcacc agatttagtc ctgcatttta aaggggctag 5640 ctttgctata gatggtggga tgatctcgcg tgtctccctg gatggctcag ctatggacct 5700 ggtcttaata aaagtggata aattgcctat tgtttttaag aattatacaa aatattatac 5760 taaaacaatt gggagagatt ctctcctgct ttggagttca ccacaaggcc gcttggctat 5820 gccagtaacg aatgtccata tggcgggcaa tttggtgacc ctagaaggaa cgcaaacagc 5880 acaaacctac tcctatgcag tttcatccaa gaggggcatg tgtgggggtc ttctggttac 5940 tagagttgat ggctcctaca aggtcttggg gatgcatatt gctggcaatg gctcaatagc 6000 gcgagctgca tcactccatt gcctaacaca atacaggaat gaaggcgtca tcatgtctaa 6060 ggtctttgta gggcatcagg ttttccagcc ctcaaagact agtctgcatc caagccccct 6120 ctataaagcc tttgaaataa agatggagcc agctgtctta tcacctcatg acccccgctt 6180 ggaggttgcc ttgccatcag ttgtcaaaga tgctgcttcc aagtacaggg ttgatgtctt 6240 caagcccgat caaaagcttt ggatgtatgt ccttgatgag gtgaaatctg cctttcgatc 6300 taagttgggc attcattcca aggttacctt ggaacaggca gtcttgggct attcagactt 6360 gtcttctctt gatttaacca catcccccgg gactaaatat gttaaacttg gcttcaaaaa 6420 gagagatcta ctctctttgg atcccttctt tgtgcaccct gtcttgttgg aggatgtgaa 6480 acagctcttg gccgcagttt accgcctgga accccccagg acgattttta cagcctttct 6540 caaagatgag ctgcgcaaac gagacaaggt taaaaatggg aagacccgct gcattgaggc 6600 ctgttcaata gactatgttg tggcctatcg tgtggttatg tcctctctct atgaagccat 6660 ttaccaatca aaaccccagg aacttggcct agctgtgggc atgaatccct ggaccgactg 6720 ggatgctatg ttaaattcac ttttgcccta taattatggt ttggattaca cttcctatga 6780 tggcagctta tctgaggaac tcatgaggag tgctgttgaa gtgcttgcat actgccatga 6840 ggacccagac caagtgatgg tactacatga gactgtcttg aactctgaac acttggttat 6900 ggatgaaatc tgggaagtaa aaggtggaat gccttcaggt agcccttgca caacagtctt 6960 gaattctatt tgtaatatcc tggtgtgccg ctacttggcc tattcgcagg gaccatcagt 7020 tgagtgctta ccaattgtct atggggatga tgtgatcttt tctgtttcag aggaaattga 7080 tgccagctgc ctagtggagc aagcaagaag agaatttggg atggaaatta catccagtga 7140 taagagtgca gttcctactc ttttgaattt ggaagaagtt gagtttttga aacgcaccac 7200 tcgcttcttc ccaggcacca cctacaaagt tggggccttg aatttgtcca ctatggagca 7260 gcatattatg tggatgaaaa atttgtcaac ttttccaagc cagctgcagt cctttgagaa 7320 tgagctggct ttgcatggac agcatgtgta tgaatcctat cagaatgttt ttcaagaggt 7380 tttaaaacca tggaaaataa caatggaaga ttatgatgtt gttgtgaggc ggatgttgtt 7440 ctatgttttt gaatgatttt gattttgctt tgaatttaga atttttttct ggcctaatgc 7500 cttgattttg atttttagaa ttagtggtgc attcttt 7537 //