ID HF549181; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC HF549181; XX DT 15-NOV-2012 (Rel. 114, Created) DT 15-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Cotton leaf curl Burewala virus complete genome, isolate C-32 XX KW complete genome. XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2759 RA Tahir M.; RT ; RL Submitted (05-NOV-2012) to the INSDC. RL Tahir M., ASAB, National University of Sciences & Technology, ASAB, RL National University of Sciences & Technology, Islamabad 44000, PAKISTAN. XX RN [2] RA Shuja M.N., Tahir M.; RT "Diversity of Cotton leaf curl Burewala virus in Pakistan"; RL Unpublished. XX DR MD5; 9270e2bf349ae0ff45488799d8adea2e. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Cotton leaf curl Burewala virus" FT /host="Gossypium hirsutum" FT /isolate="C-32" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad" FT /isolation_source="host leaves" FT /collected_by="Rob Briddon" FT /collection_date="14-Dec-2010" FT /identified_by="M. Tahir" FT /clone="GMT-12" FT /db_xref="taxon:620894" FT CDS 132..488 FT /gene="V2" FT /product="V2 protein" FT /function="movement" FT /db_xref="GOA:B8Q6T2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B8Q6T2" FT /protein_id="CCO61985.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT CDS complement(283..807) FT /gene="C5" FT /product="C5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:K8ES86" FT /protein_id="CCO61986.1" FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISNQEKHHTIRVILR FT LNVLIHPDLTQHINRLNTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF FT TSSRNIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETTAYLRSGRGN FT DYICWSLRHNS" FT CDS 292..1062 FT /gene="CP" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:D3HIR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIR0" FT /protein_id="CCO61987.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1059..1463) FT /gene="REn" FT /product="replication enhancer protein" FT /function="replication enhancer" FT /db_xref="GOA:D3HIR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIR1" FT /protein_id="CCO61988.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT CDS complement(1505..2596) FT /gene="Rep" FT /product="replication associated protein" FT /function="replication" FT /db_xref="GOA:K0P789" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K0P789" FT /protein_id="CCO61989.1" FT /translation="MAPPKRFKIQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYTEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNQSTAQGSEETQQEEESRS" FT CDS complement(1627..1815) FT /gene="TrAP" FT /product="transcription activator protein" FT /function="transactivator" FT /db_xref="UniProtKB/TrEMBL:K0P0J1" FT /protein_id="CCO61990.1" FT /translation="MTSTRISSNTLKSSWGPKETGSPTQNTESQFKLKAGYRQSSCAIL FT VQTAVIRNSSMRKKTQH" FT CDS complement(2242..2682) FT /gene="C4" FT /product="C4 protein" FT /function="symptoms determinant" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9MZI0" FT /protein_id="CCO61991.1" FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSARITDS FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFR" XX SQ Sequence 2759 BP; 715 A; 545 C; 649 G; 850 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcttattata agtacttcgt tgctaagttt 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacgtattcc ccagatactc 240 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag 300 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgtcg tctcaacttc 360 gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt 900 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt 1080 gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact 1140 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga 1200 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa 1260 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctggatcctg 1320 atcgtgagta tatccatatt cgtcgtgaat ggacggttga cgtggctgat gatcttgaaa 1380 tagaggggat ttggaacttc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg 1440 ggttcccctg tgcgtgaatc catggttgtg gcagttgatt gacagatact aagaacaccc 1500 tcattcaaga tctactctcc tcctcctgtt gcgtctcttc gcttccctgt gctgtacttt 1560 gattggaagc tgagtacagt ggtccttcga gagtgatgaa tattgcattt tttaaggccc 1620 aattctttaa tgctgtgttt ttttcctcat tgaggaattc cgtataactg ctgtttggac 1680 caggattgca caggaagatt gtcggtatcc cgcctttaat ttgaactggc tttccgtatt 1740 ttgtgttgga ctgccagtct ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat 1800 gcgggtcgac gtcatctatg acgttgtacc aggcgtcgtt actgtatact ttgggactca 1860 ggtccagatg tccgcacaaa tagttatgtg gtcccaatga tctagcccac atcgtcttcc 1920 ccgttcgact atctccctca attactatac tccgaggtct aaggggccgc gcagcggcat 1980 cgacaacgtt atcgatggcc caaacttcaa gttcttctgg aacttgatcg aaagaagaag 2040 gagaaaaagg agaaatatag ggagccggtg gctcctgaaa gattctgtct agatttgcat 2100 ttaaattatg aaattgtagt acaaaatctt taggagctag ttccttaatg actctaagag 2160 cctctgactt actgcctgcg ttaagtgctg cggcgtaagc gtcgttggct gtctgctgtc 2220 ctcctcttgc tgatcttcca tctatctgaa actctcccca ctcgagagtg tccccgtcct 2280 tgtcgatgta ggccttgaca tctgagcttg atttagctcc ctgaatgttc ggatggaaat 2340 gtgctgacct ggttggggat accaggtcga agaatctgtt attcgtgcag acgaatttgc 2400 cctcgaactg gatgagcaca tggagatgag ggctcccatc ttcgtgtaac tctctgcaga 2460 gtttgatgta ttttttattc gagggtgtgt tgatggcttg aatttgggaa agtgcttcct 2520 ctttagtgag tgagcactgt ggataagtga tgaaataatt tttggcttgt attttaaaac 2580 gtttgggggg agccattgac tttggtcaat tagagacaac tgatgggctt ttactctggg 2640 aattggagac tggatacaat ttatagtgtc tccaaatggc atattctgta aataactaga 2700 agtttgtttg aaattcaaat tcccctttgg gctccaaaag cggccatccg tataatatt 2759 //