ID   HF545020; SV 1; linear; genomic RNA; STD; VRL; 767 BP.
XX
AC   HF545020;
XX
DT   23-OCT-2012 (Rel. 114, Created)
DT   23-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Cucumber mosaic virus partial CP gene for capsid protein, strain Behera-Eg,
DE   genomic RNA
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-767
RA   Omar A.F.;
RT   ;
RL   Submitted (10-OCT-2012) to the INSDC.
RL   Omar A.F., Plant pathology, Faculty of agricultiure, Kafrelsheikh, 33516,
RL   EGYPT.
XX
RN   [2]
RA   Omar A.F., Sidaros S.A., el-kewey S.A., Sara E.E.;
RT   "Biological and molecular biology on Cucumber mosaic virus";
RL   Unpublished.
XX
DR   MD5; c0ae2f65293f30186b22b5984dc5d5c0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..767
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA 3"
FT                   /host="Cucurbita pepo"
FT                   /strain="Behera-EG"
FT                   /isolate="Behera"
FT                   /mol_type="genomic RNA"
FT                   /country="Egypt:Behera"
FT                   /isolation_source="host fruit"
FT                   /collected_by="Ayman Omar"
FT                   /collection_date="15-Jul-2009"
FT                   /identified_by="Ayman Omar"
FT                   /PCR_primers="fwd_name: 5`CP, fwd_seq:
FT                   ctcgaattcggatccgcttctccgcgag, rev_name: 3`CP, rev_seq:
FT                   ggcgaattcgagctcgccgtaagctggatggac"
FT                   /db_xref="taxon:12305"
FT   CDS             <1..>691
FT                   /codon_start=2
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:K4TZS9"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:K4TZS9"
FT                   /protein_id="CCN27449.1"
FT                   /translation="CFLFCVVELSRVMDKSESTSAGRNRRRRPRRGSRSAPSSADANFR
FT                   VLSQQLSRLNKTLAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLL
FT                   PDSVTEYDKKLVSRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVL
FT                   VYQYAASGVQANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRI
FT                   PTSGVLPV"
XX
SQ   Sequence 767 BP; 171 A; 202 C; 182 G; 212 T; 0 other;
     gtgttttctc ttttgtgtcg tagaattgag tcgagtcatg gacaaatctg aatcaaccag        60
     tgctggtcgt aaccgtcgac gtcgtccgcg tcgtggttcc cgctccgccc cctcctccgc       120
     ggatgctaac tttagagtct tgtcgcagca gctttcgcga cttaataaga cgttagcagc       180
     tggtcgtcca actattaacc acccaacctt tgtagggagt gaacgctgta gacctgggta       240
     cacgttcaca tctattaccc taaagccacc aaaaatagac cgtgggtctt attatggtaa       300
     aaggttgtta ctacctgatt cagtcacgga atatgataag aagcttgttt cgcgcattca       360
     aattcgagtt aatcctttgc cgaaatttga ttctaccgtg tgggtgacag tccgtaaagt       420
     tcctgcctcc tcggacttat ccgttgccgc catctctgcc atgttcgcgg acggagcctc       480
     accggtactg gtttatcagt atgccgcatc tggagtccaa gccaacaaca aactgttgta       540
     tgatctttcg gcgatgcgcg ctgatatagg tgacatgaga aagtacgccg tcctcgtgta       600
     ttcaaaagac gatgcgctcg agacggacga gctagtgctt catgttgaca tcgagcacca       660
     acgcattccc acatctggag tgctcccagt ctgattccgt gttcccagaa tcctccctcc       720
     gatctctgtg gcgggagctg agttggcagt tctgctataa actgtct                     767
//