ID   HE984148; SV 1; linear; genomic DNA; STD; VRL; 1478 BP.
XX
AC   HE984148;
XX
DT   16-SEP-2012 (Rel. 114, Created)
DT   09-AUG-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Cassava mosaic Madagascar alphasatellite rep gene for replication
DE   associated protein, segment DNA-1, isolate MG:Diana:635A1:2011
XX
KW   .
XX
OS   Cassava mosaic Madagascar alphasatellite
OC   Viruses; Alphasatellitidae; Geminialphasatellitinae; Colecusatellite.
XX
RN   [1]
RP   1-1478
RA   Lett J.M.;
RT   ;
RL   Submitted (27-AUG-2012) to the INSDC.
RL   Lett J.M., CIRAD-BIOS-UMR PVBMT, Pole de Protection des Plantes, 7 Chemin
RL   de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE.
XX
RN   [2]
RX   DOI; 10.1007/s00705-013-1664-0.
RX   PUBMED; 23525698.
RA   Harimalala M., De Bruyn A., Hoareau M., Andrianjaka A., Ranomenjanahary S.,
RA   Reynaud B., Lefeuvre P., Lett J.M.;
RT   "Molecular characterization of a new alphasatellite associated with a
RT   cassava mosaic geminivirus in Madagascar";
RL   Arch. Virol. 158(8):1829-1832(2013).
XX
DR   MD5; 110189876d5f88d81de24c2b7e6c381f.
DR   EuropePMC; PMC4810563; 26865712.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1478
FT                   /organism="Cassava mosaic Madagascar alphasatellite"
FT                   /segment="DNA-1"
FT                   /host="Manihot esculenta"
FT                   /isolate="Madagascar:Diana:635A6:2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Madagascar:Diana"
FT                   /lat_lon="13.62 N 48.41 E"
FT                   /collection_date="04-Jul-2011"
FT                   /db_xref="taxon:1231298"
FT   CDS             70..1017
FT                   /transl_table=1
FT                   /gene="rep"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:K0P1Q3"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:K0P1Q3"
FT                   /protein_id="CCM09575.1"
FT                   /translation="MPAVRSQWWCFTVFFLSTTAPDLVPLFENTAVSYACWQEEESPTT
FT                   RRRHLQGYLQCKGLRTFNQVKSLFGDWNPHLEKQRARKTDEARDYCMKEETRVSGPFEF
FT                   GDYCPAGSHKRRQRDAVIRSPVRMAEENPSVFRRVKAKIAEEEFQKSAPEIQIAKLKSW
FT                   QSRLKQLLSRDPDDRTIFWVYGPNGGEGKSTFARDLYRSGHWFYTRGGSADNVSYQYIG
FT                   CLGNNIVFDIPRDKKEYLQYSLIEMFKDRLIVSNKYEPLMAPMLNCIHVIVMSNFLPDT
FT                   EKISKDRIHVIPCRPCGVCLKHHDTEMKCEEYVD"
XX
SQ   Sequence 1478 BP; 435 A; 297 C; 367 G; 379 T; 0 other;
     accccgcctc gtctccctca cctcgtctcc ctctttattt acaactctgc cattcgcgtt        60
     cgatataaaa tgcctgccgt ccgatcgcaa tggtggtgtt tcaccgtgtt cttcttgtct       120
     accactgcgc ccgatttggt gcccctcttc gaaaatactg ccgttagtta cgcctgctgg       180
     caagaagagg agtctccgac gactcgccgt cgtcatctgc agggatatct gcagtgcaag       240
     ggtctgagga ccttcaacca ggtgaaatcg ttgttcggtg actggaatcc gcatctggag       300
     aagcagcgcg cccggaagac ggatgaggcc agggattatt gcatgaaaga agaaactagg       360
     gtttctggcc ccttcgaatt tggggattat tgtcctgctg ggtcccacaa aagaagacaa       420
     cgggacgctg tcattagatc tccggtaagg atggctgagg aaaatccctc tgtgttccga       480
     cgagtcaaag caaagattgc tgaggaagaa ttccagaaat ccgcgccaga gattcaaatt       540
     gcaaagttga aatcatggca atcacgtctg aaacagctgc tgtcgcggga cccggatgac       600
     cgcactatct tctgggtgta tgggccgaat ggaggagaag gaaaaagtac ctttgctcga       660
     gatttgtaca gatctgggca ttggttctac acccgtggtg gatctgcaga caacgtcagc       720
     taccagtaca tagggtgttt aggaaataat attgtatttg atatccctcg tgataagaag       780
     gaatatctac aatacagctt aatagaaatg tttaaggata gattaatagt gagtaataag       840
     tacgagccgc tcatggcccc tatgctgaat tgtattcatg taatagttat gtcaaatttt       900
     cttccggata cggagaaaat tagcaaggat aggatccatg taatcccatg tagaccctgt       960
     ggtgtttgtc tcaaacacca tgatacggaa atgaaatgtg aggaatatgt ggattaaaca      1020
     tatgtcaaga accagtaaca aaatcatgta acgctatacg attgacttaa agaaatgatg      1080
     tcgcgcagcg gcaaaggact cagaaagatt ttgtgtcttg aaaacaagaa tgaatgcaat      1140
     gaaaaaggaa cactgtgcat gtggacctct atgttaatgg tcgttgtcgc gcagcggcaa      1200
     aggactcaga aatattttgt gtctggaaaa caagaatgaa tgcaatgaaa aaggaacact      1260
     gtgcatgtgg acctctatgt taatggtcgt tgactgacta ttgaaccacg tgttgaaaaa      1320
     caaaagggat caattgtgca cgtatgcgga aggactaaat tgtaataaac caaagttcat      1380
     taaaaacgcg gggtacgttt cgtaaatagg caaaacttgg gcaccccttt tgcaatttaa      1440
     gggagtctag gatatatata cgaggcgggt gtagtatt                              1478
//