Dbfetch
ID HE984147; SV 1; circular; genomic DNA; STD; VRL; 2797 BP. XX AC HE984147; XX DT 16-SEP-2012 (Rel. 114, Created) DT 16-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE East African cassava mosaic Kenya virus, segment DNA-A, isolate DE Madagascar:Diana:635A6:2011 XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2797 RA Lett J.M.; RT ; RL Submitted (27-AUG-2012) to the INSDC. RL Lett J.M., CIRAD-BIOS-UMR PVBMT, Pole de Protection des Plantes, 7 Chemin RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE. XX RN [2] RA Harimalala M., De Bruyn A., Hoareau M., Andrianjaka A., Ranomenjanahary S., RA Reynaud B., Lefeuvre P., Lett J.M.; RT "Molecular characterization of a new alphasatellite associated with a RT cassava mosaic geminivirus in Madagascar"; RL Unpublished. XX DR MD5; 91690bb254cce11c950900611932c9f9. XX FH Key Location/Qualifiers FH FT source 1..2797 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta" FT /isolate="Madagascar:Diana:635A6:2011" FT /mol_type="genomic DNA" FT /country="Madagascar:Diana" FT /lat_lon="13.62 S 48.41 E" FT /isolation_source="host leaf" FT /collection_date="04-Jul-2011" FT /db_xref="taxon:393599" FT CDS 173..529 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LZ49" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LZ49" FT /protein_id="CCM09577.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEDVQNVSKPRCP" FT CDS 594..1106 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:K0NZY6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K0NZY6" FT /protein_id="CCM09578.1" FT /translation="MVRCVSDVTRGPGITHRVGKRFCVKSIYILGKIWMDENVKKQNHT FT NHVMFFLVRDRRPYGPSPQDFGQVFNMFDNEPTTATVKNDLRDRYQVLRKFYATVVGGP FT SGMKEQSLVKRFFRINNHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIY FT FYDAVTN" FT CDS complement(1103..1507) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:K0P4V1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K0P4V1" FT /protein_id="CCM09579.1" FT /translation="MDSRTGELITAPQAKNGVFTWAITNPLYFDITNHDTRPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFRVWTTLRPPTGLFLRAFRYQVLKYLDMLGVISINT FT VIIAVDHVLYDVLLNTLQVTEHHEIKFNLY" FT CDS complement(1248..1655) FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:K0P1Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K0P1Q5" FT /protein_id="CCM09580.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRHEAREHEPRYHHTPDTVQPQ FT HPEGTGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1564..2643) FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:K0P8G8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K0P8G8" FT /protein_id="CCM09581.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQLRHLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPLTPYVSPFLSSSFTNVPDELEAWVSENVMGSAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGSQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLAEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEEQGPPT" FT CDS complement(2196..2492) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K0P4Q4" FT /protein_id="CCM09582.1" FT /translation="MKMGNLICMPLFSSRASTIVPTNDSSTSYPLPGQPISTQTFRELN FT RAPTSSPIWTRTETPSNGASFRSTDDLLEEDNNQPMTLTPRLLTQQISQRLLM" XX SQ Sequence 2797 BP; 734 A; 566 C; 739 G; 758 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacca gatggccgcg cccgtgaaag 60 aaagtggtcc ccgcgcacta tgtatgtcgg ccaatcatat ttacgcgtga aagcctagat 120 atttgttgtt tgtctttata gacttcgtcg cgaagtagtg aagcgcgtca acatgtggga 180 tccattgttg aatgatttcc ctgaaaccgt tcacggtttc cgttctatgc ttgccgttaa 240 atacctgtta catctggaac aggaatacga tcgcggtact gtcggggctg agtatatacg 300 ggatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactgtc cgcgtcacca gaagcaaaat atgggccaac aggcccatgt 480 atcggaagcc gaagatgtac agaatgtatc gaagcccaga tgtccctaag ggctgttaag 540 gcccatgtaa ggttcagtcg tatgaacaga gggacgatgt taagcacacg ggtatggtcc 600 gatgtgtcag tgatgttacg cgtgggcctg gcattaccca tagagtcggg aagaggtttt 660 gtgttaagtc catatatata ttgggcaaga tctggatgga tgagaatgtc aagaagcaaa 720 accatacgaa ccatgttatg ttcttcctcg ttcgagatag aaggccgtat gggccgagcc 780 cacaagattt tggacaagtg ttcaacatgt ttgataatga acctaccact gcaactgtga 840 agaatgatct tagggaccgg tatcaggtgt tacgtaaatt ttatgcgacg gtcgtgggtg 900 gaccctccgg gatgaaggaa caatcgctgg ttaagaggtt ttttaggatt aataatcatg 960 tagtgtataa tcaccaggaa caggccaagt atgagaatca tactgagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcaaatc ctgtgtacgc tacattgaaa atacgcatct 1080 atttctatga tgcagtgaca aattaataaa ggttaaattt tatttcatga tgctccgtaa 1140 cttggagtgt gtttagtaat acatcgtaca gaacatgatc aacagctata attacagtgt 1200 taatggaaat aacgcctaac atatctaaat atttgagcac ttgatatcta aatgctctta 1260 agaaaagacc agtcggaggc cgtaaggtcg tccagaccct gaagttgaga aaacacttgt 1320 gaatccccag tgccttccgg atgttgtggt tgaaccgtat ctggagtgtg atgatatcgt 1380 ggttcatgtt ccctggcctc gtgtcgtggt tggtgatgtc gaaatagagg ggatttgtta 1440 ttgcccaggt aaaaacgcca ttctttgctt gaggcgcagt gatgagttcc ccggtgcgag 1500 aatccatggt taatgcagtc gatatggaga tagaacgagc agccgcattc aaggtctacc 1560 cgcctacgtc ggagggccct gttcttcgct gtgcggtgtt ggactttgat gggcacttga 1620 gaacaatggc tcgtggaggg tgatgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ctggttcttt tcttctgcca gaaactcttt ataggacgag gtaggtcctg gattgcagag 1740 gaagatagtg ggaatgccgc ctttaatttg aattggcttc ccgtactttg tattagactg 1800 ccagtccctc tgggacccca tgaattcctt aaagtgcttg aggtagtggg gatcgacgtc 1860 atcaatgacg ttgtaccagg cgtcgtttga atatatcttg ggagacagat ccaggtgtcc 1920 acatagatag ttgtgtgggc ccagagagcg ggcccacatc gtcttcccgg ttcggctatc 1980 accttctaga acaatactga tcggtctcca tggccgcgca gcggaaccca tcacgttctc 2040 ggaaacccag gcttcaagtt catcaggaac gttagtgaaa gaagaagaaa gaaagggaga 2100 aacataagga gtcagaggct cttgaaaaat cctatctaaa ttgctattta aattatgaaa 2160 ctgtaaaaca aaatctttcg gggctagttc ccgtattaca ttaagagcct ctgacttatt 2220 tgctgagtta agagccttgg cgtaagcgtc attggctgat tgttgtcctc ctcgagcaga 2280 tcgtccgtcg atctgaaact cgccccattg gatggtgtct ccgtccttgt ccagatagga 2340 cttgacgtcg gagctcgatt tagctccctg aatgtttggg tggaaatggg ctgaccggga 2400 aggggatatg aggtcgaaga atcgttggtt ggtacaattg tacttgccct cgaactgaat 2460 aagggcatgc agatgaggtt ccccattttc atggagttct cggcagatct tgatgaacaa 2520 tttattggtt ggggtttgga ggtgtcggag ctggtccaaa gcctcttctt tcgagagaga 2580 acatttggga tatgttagga aatagttttt ggcttttatg ctaaaacgac cagctcttgg 2640 catttgcgct gtcgtatagc aatcgggggg cactcaaagt ctgtagcaat cgggggaatg 2700 ggggggcaat ttatatgaag ccccccaaat ggcatttatg taatatcctc agtgaatttg 2760 aaattcaaac gtggaaagcg gccatccgta taatatt 2797 //