Dbfetch
ID HE980332; SV 1; linear; genomic RNA; STD; VRL; 7525 BP. XX AC HE980332; XX DT 02-JAN-2013 (Rel. 115, Created) DT 24-APR-2015 (Rel. 124, Last updated, Version 2) XX DE Apple chlorotic leaf spot virus strain AC-ind, complete genome XX KW complete genome. XX OS Apple chlorotic leaf spot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. XX RN [1] RP 1-7525 RA Dhir S.; RT ; RL Submitted (17-AUG-2012) to the INSDC. RL Dhir S., Technology, Floriculture Division, Institute of Himalayan RL Bioresource, IHBT, CSIR, Palampur, Himachal Pradesh 176061, INDIA. XX RN [2] RX DOI; 10.1016/j.jviromet.2014.11.017. RX PUBMED; 25486082. RA Dhir S., Walia Y., Zaidi A.A., Hallan V.; RT "A simplified strategy for studying the etiology of viral diseases: Apple RT stem grooving virus as a case study"; RL J. Virol. Methods 213:106-110(2015). XX DR MD5; 1569768216931a05684f33282f28f6a4. DR EuropePMC; PMC4982687; 27519059. XX FH Key Location/Qualifiers FH FT source 1..7525 FT /organism="Apple chlorotic leaf spot virus" FT /host="Malus x domestica" FT /strain="AC-ind" FT /mol_type="genomic RNA" FT /country="India:Palampur" FT /isolation_source="host leaf" FT /collected_by="Sunny Dhir" FT /collection_date="10-Jan-2011" FT /identified_by="Sunny" FT /db_xref="taxon:12175" FT CDS 151..5799 FT /gene="replicase" FT /product="hypothetical protein" FT /db_xref="GOA:L0R2E8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008744" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:L0R2E8" FT /protein_id="CCK73640.1" FT /translation="MAFSYRTPQEELLSRLPQSQQEAISGFQYERIQKEEEKKVENFSF FT YLPEKTREWFTESGVYLSPFSYVNHSHPGCKTLENHLLFNVVASYISKYSYVACLSIKS FT NKMSKMERLGSSSVKTYDILNRLVTAKDKARYGPLARPERSPCPKKTNIFIHDEIHYWS FT RDQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSES FT YTQPLENGFLLSSSSILVRNKATGVEIRYQVSLVYSLGSHHLFHIYPTEDLMKEEVRRF FT GPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYLSSLKKPDVQSAVAKLRQLSDADIS FT IESIFMVQEFASRIEKNGVGSWSCSFWECMKDWFFDKLPYREVLEKIGLADDFTRRLMK FT IKPLAFDIHTTDRPLTVRMVIDQIWEERQSSGDDIPNVIFYGRREWLEHGVIPKVKKNL FT AKLIPGREVDTDNYPKEIYSDLLSSTSIWKSQDDNLMHRSASPVIVLKSNRAYCEAAKF FT NSNCISLCAAPQGEIVEKTPFEIERVAKKKEISLSCLDFHIKKMKVKDTDELKIKLVEH FT SKEALRRQKRRERVKRSRMIPVHYLAQVHDMKSEGPRDKEKEDKEVTLALEALKIQKQE FT AHNGVGDGEMAVDAGILNKKKTLPTLKLNDLIGREQLCSSGLIKTVGNDYLALEEQIKC FT MPLAQLKNKKAAYFCLDFPMVYFHDKVSYPTFEATGEIKKVIMEARSKWGIDFNSALVQ FT FTNGECQSPLHSDSEECYDDDGILIINVCGDAKFRTNCHDEIIDLKQGNEVLMPSGYQR FT MNRHAVKVESEGRTSVTPRVHKRDFSFESKLKFIRGRFDCLFVSVAEIIHKKPEEITMF FT LPHVVDRCISSRGCSLDDAKAICEKYEIKMECEGDCGLVECGTVGLSVGRMLLRGNHFT FT VASVRRSSMDSLVNSSKELKSNGILDHVMFNFHKRLKLVEPDLTTADIKVDSSRAGKLL FT KSLMDGMAGIVSHNSTHEGWRMIKGINSTSEMRSFMGMVKGQSDEAKGDLFGKVQELNF FT MKTKIYGIFGFAGSGKSHAIQNLIQTEFKGSHGIMVICPRRFLPTDGSEKGADEKDIKT FT FESALKSDVKGKRLFILDEVSLLPKGFTDLLMLKMHMEGILKKSTIVCIGDPLQAGYFC FT PKDDNYLSREGEIKRLFKEGVNYKWYSYRINKFMAKKLAIETMNEFIGIDAQSSIYKDM FT PSAHHFMENKGNHIEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLC FT SDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGVGASKEFILGSSSVK FT LILSEKDISRGAGVDEMDREARLEGDVWLKSMIYLGKRYHIVEPLGQVIKLTENAIKCH FT IPVCSSQVLGPELDKIQAREFREFKGKNGWSNQFREEAGPNWKFPYKVNQAMSYEAVYP FT RHRMDDDLTFLAAIKKRLRFDNVANNYAKFKAAENKGKYLAKVFLKHVPNNVAKEHRLR FT IKCKTVSETSFKKCRQPFGHIHRGLTRIGPWTKIFLFMKSQLCTKFEKRFTKQRQVKLY FT FVSRTKSLVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFAKRFSNGSVCVESGY FT TAFDVSQDHTILAFEVELLKHFGWDEKVLQSYVKMKCTLGCRLGGFAIMRFTGEFSTFL FT FNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREVDTHEFILSKLSLKAKVNRTKV FT PMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLE FT IEQLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDEDGDDDKGSKIEDRRRGYSNCW FT GEKLQNLF" FT CDS 5717..7066 FT /gene="movement protein" FT /product="hypothetical protein" FT /db_xref="GOA:L0R243" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:L0R243" FT /protein_id="CCK73641.1" FT /translation="MMIRGRKLKIAEGDIPIAGVKSSRIYSDVSPFRRASDLMIHWNEF FT VFKVMPEDIAGDGFRLASIPVIPSSEVQAVLRKRESTNYVHWGALSISIDALFRKNAGV FT SGWCYVYDNRWETFEQAILQKFHFNLDSGSATLVTSPNFPVSLDDPGLSNSISVAVMFE FT NLNFKLESYPISVRVGNMCRFFDSFLSSVKNRTDSNFLLEAANADPLGVGAFGFEQDDQ FT VSELFNYIQTAPTQAIKSREHEIPRGLFGMMGKKKVKSFEFASGSRSMEKRRPQRGRPL FT ERPYSQRVTPGFRSQDEKIEHQGLSTDSDFENFLKSKGRDKAGPKSLASEGSSVDNITA FT REFQFARQNQEKENGGSAQSSTKGRRRAESVPGRRGQAPSWKDRGNTGTDIGVHLREHS FT NPGNLGADGVSRCDGGGQIYGGSESHRVLQSDGGGQYDQGLQDYLFGSEH" FT CDS 6777..7358 FT /gene="coat protein" FT /product="hypothetical protein" FT /db_xref="GOA:L0R1W0" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:L0R1W0" FT /protein_id="CCK73642.1" FT /translation="MAAVLNLQLKVDAELKAFLAAEGRPLHGKTGAILEQTLESIFANI FT AIQGTSEQTEFLDVMVEVKSMEDQKVIGSYNLMEVVNMIKAFKTTSSDPNISNMTFRQV FT CEAFAPEARNGLVKLKYKGVFTNLFTTMPEVGSKYPELMFDFNKGLNMFIMNKAQQKVI FT TNMNRRLLQTEFAKSENEAKLSSVTTDLCI" XX SQ Sequence 7525 BP; 2306 A; 1329 C; 1898 G; 1992 T; 0 other; tgatactgat acagtgtacc atcacgtcgt gagtaaacag attgacgtaa cgctgccctt 60 ggtcaaggac cagcattcca atgctactac attaaataca ggtcacattg cattccaaaa 120 ctttccgttt aaccacgtga aaggttagaa atggctttct cctacagaac gccacaggaa 180 gaacttctta gtagactacc ccagtctcaa caggaagcga taagcggatt tcaatatgaa 240 cgcatccaaa aggaggaaga gaagaaggtg gagaacttct ctttttacct accagagaaa 300 accagggagt ggttcactga gtcaggtgtg tacctctcac ctttttctta cgtcaaccat 360 tctcaccctg gttgcaagac tctggagaac caccttttat ttaatgtcgt agctagttat 420 attagtaagt attcttatgt agcatgtctc agcatcaagt ccaataagat gagcaagatg 480 gaacgtttag gctctagttc agttaagaca tatgatattc taaatagatt ggttaccgca 540 aaagataagg ctcgatatgg gcctttggcc agaccagagc gttccccatg tccaaagaag 600 accaatattt ttatccacga tgaaattcat tattggtcaa gggatcaact tgaaacattt 660 cttcaagtgc acagaccaaa gaacctttgg gctactctgg tctttcctcc tgagatcttg 720 gctggttata agtcgtcagt tttaccattt ctttaccagt ttgagattca tggaaaagat 780 ttggtttaca tgcctgatgg agttagatca gagagttaca ctcaacctct tgagaatgga 840 tttcttctga gttcaagcag tatacttgtg agaaacaagg ctactggagt tgaaattaga 900 tatcaggtta gtcttgtgta ttctctgggt tctcaccatt tgttccacat ttaccccacg 960 gaggacctga tgaaagaaga ggtgagaagg tttggacctt atgatttgtt cgatgtgggt 1020 tcattatttg tcaagccagt gcgcgtccct atccaagatt ttccacttag cgtatttaag 1080 aaaatattca tatatttgag ctccctcaag aagcctgatg tgcagtcagc agttgcgaaa 1140 cttagacaac tatctgatgc agacatttca attgagagta ttttcatggt gcaagagttc 1200 gccagtagaa ttgagaagaa tggtgtgggt agctggtcat gctccttttg ggaatgcatg 1260 aaagattggt ttttcgataa actgccatac agggaggtgc tggagaagat tggacttgcg 1320 gatgatttca caagaaggct gatgaagatc aaaccacttg cttttgatat ccacacaacg 1380 gataggcccc tcacagttag gatggttatt gatcaaatat gggaagagag gcaaagttct 1440 ggtgatgaca ttccaaatgt cattttttac gggagaaggg agtggcttga gcacggagtg 1500 atcccaaaag tgaagaaaaa cttagccaag ttaattccag ggagagaggt ggatacagac 1560 aattatccca aagaaatata ctctgatctg ttgtcatcca cttctatatg gaaatctcaa 1620 gacgataatc tgatgcacag gagtgcgagt cctgttatag tgcttaagtc caaccgagcc 1680 tattgtgaag ctgcaaagtt caattcaaat tgcattagtt tgtgtgcagc ccctcaaggc 1740 gaaattgtgg aaaaaacccc ttttgaaatc gaaagggtag cgaagaaaaa ggaaatttcc 1800 ttgagctgct tggattttca tattaagaag atgaaagtga aggacacgga tgaattaaaa 1860 atcaagttgg ttgagcacag caaagaagcg ctgaggaggc aaaagaggag agaaagggtc 1920 aagaggtcaa ggatgatccc tgtacattat cttgctcagg ttcatgacat gaagagtgaa 1980 ggccctagag ataaagaaaa ggaggacaaa gaagtcactt tggctttaga agctctgaag 2040 attcaaaagc aggaagcaca caatggagtc ggtgatgggg agatggcagt tgatgcaggg 2100 atactgaata aaaaaaagac tttaccaacc ctgaagttga atgatttgat tgggagagaa 2160 caactttgct cttctggttt gatcaagact gttgggaatg attacctcgc attggaagaa 2220 cagatcaagt gcatgccact tgctcagttg aaaaacaaga aggcggcata tttttgcctt 2280 gatttcccga tggtgtattt ccatgacaaa gtttcctacc ccactttcga ggcaacagga 2340 gaaatcaaga aggtcatcat ggaggcaagg agtaagtggg gtatagactt caacagcgca 2400 ttggttcagt ttacaaatgg cgagtgccaa tcgcctttgc acagcgatag tgaggagtgc 2460 tatgacgacg atgggatact catcatcaat gtctgtggag atgccaagtt tcgcaccaac 2520 tgtcatgatg agatcataga tctcaaacaa ggaaatgagg tgctgatgcc aagtggctac 2580 caaagaatga acagacatgc agtaaaggtt gagtcagaag gaagaacaag tgttactccc 2640 agggttcaca agagggattt tagttttgag tccaagctca agttcatcag gggtcgattt 2700 gattgccttt tcgtaagtgt agcagagatt atacataaga aaccagagga gatcacgatg 2760 tttctgccgc atgttgtaga caggtgcata agcagtaggg gatgttcact tgatgacgcc 2820 aaggcgattt gcgaaaagta tgaaatcaaa atggagtgtg aaggggattg cggcctggta 2880 gaatgtggaa cagtgggcct gtcagttgga agaatgttgc taagagggaa ccattttaca 2940 gttgcttcag tcagaagatc atctatggac tcactggtca attcctcgaa ggaattgaag 3000 tcgaatggga ttctggatca tgtcatgttt aattttcaca aaaggctcaa gcttgttgaa 3060 cccgacttga ccacagcaga catcaaggtt gattcctcca gggcaggtaa gttactcaaa 3120 agtctgatgg atgggatggc aggaatcgta tcacataact caacccatga aggttggaga 3180 atgatcaaag gaataaatag cacttcagaa atgaggtcat tcatgggcat ggttaagggt 3240 caaagtgacg aagcaaaagg ggatctgttt ggtaaagttc aagaattgaa ttttatgaaa 3300 acaaagattt acgggatatt tggattcgca gggtctggga aaagtcacgc aattcaaaat 3360 ttgattcaaa ctgagttcaa aggttctcac gggatcatgg tcatctgtcc cagaagattc 3420 ttgccaacag atgggagcga aaaaggcgcg gatgagaaag acatcaaaac ctttgaaagc 3480 gcattgaaat ccgatgttaa aggaaagagg ctgtttatac ttgatgaggt tagcttgctg 3540 cctaagggtt tcactgacct tctcatgctg aagatgcaca tggaaggtat tttgaagaaa 3600 tcaaccattg tgtgcattgg tgaccccctt caagctggtt acttctgtcc taaggatgac 3660 aattatttgt ctagggaggg agagatcaaa agactcttca aggaaggggt gaattacaaa 3720 tggtacagtt acaggatcaa caagttcatg gcgaagaaat tggccattga gacgatgaat 3780 gagttcattg gcatcgatgc acagagttca atctacaaag atatgccgtc agcccatcac 3840 ttcatggaga ataaaggaaa tcacattgag gtgatccttg ttgccagcat gatagagaag 3900 gaattgtatt caaattatgg taacgtgatg acttttggtg aatcacaggg tctgactttc 3960 aactgcggtg tgatagtgct ttccgaggag gccaaattgt gctctgatgc tcacataatg 4020 gtggcaataa caagatttag aaggggtttt tgctttgcac ttggaagcaa aggttcaaaa 4080 gaggattata tgaggtctat gaaaagtgga cttctgcaga ggatgtgctc tggagttggt 4140 gcttccaagg aattcatatt aggatcctct tcggtcaagc ttatattgag tgagaaggat 4200 atttcaagag gggctggagt tgatgaaatg gatagagagg caaggttgga aggggatgtg 4260 tggctcaaga gcatgatata tttgggaaag agataccaca ttgttgaacc acttggccaa 4320 gttatcaaat tgacagagaa tgcaataaag tgtcatattc ctgtttgctc aagccaggta 4380 ctaggaccag agttggataa aattcaagca agggagttca gagaatttaa aggcaagaat 4440 gggtggtcaa atcagttcag agaggaagca ggacccaact ggaaattccc ttacaaagtt 4500 aatcaggcta tgagctacga ggctgtgtac ccaaggcaca gaatggatga tgatctgaca 4560 ttccttgcag caataaagaa aaggcttcgt tttgacaatg tggcgaacaa ctatgcaaaa 4620 ttcaaagcag cagagaacaa gggaaagtac cttgcaaagg ttttcttgaa gcatgttccc 4680 aataatgtgg cgaaggaaca taggcttcga atcaagtgta agacagtttc agagacaagc 4740 ttcaaaaagt gcaggcaacc attcgggcac attcacagag gtctgactcg gattggccct 4800 tggacaaaaa tctttctctt catgaaatcg cagctttgca cgaaatttga aaagagattc 4860 acgaagcaaa ggcaggtcaa actttacttt gtttcccgca caaaatccct ggtggaattt 4920 agcccatggt gtagatacac ggagaaggta ctcactgcga acctacccga taactactac 4980 attcatcaga ggaagaactt tagtgagttg gaggattttg caaaaaggtt ttcgaatggc 5040 tctgtatgtg tggaatcagg ttacacagct tttgacgttt cacaagacca cacaattttg 5100 gcatttgagg ttgaactgct aaagcacttt ggttgggatg agaaagtgct tcaaagttac 5160 gttaaaatga aatgcactct gggctgcaga ttgggtgggt ttgcaataat gagatttacc 5220 ggggaatttt cgacgttctt gttcaatact cttgcaaata tggtcttcac cttttgtagg 5280 tatgaggttc cagacggaac ccctatttgc tttgcgggtg acgacatgtg tgcattgagg 5340 aatttaagag aagtcgacac ccacgagttt atcttgagca agttgagtct aaaggcgaag 5400 gtcaacagga cgaaggtgcc gatgttctgt ggttggaggt tgtgttgtga tggtcttatt 5460 aaagaacctt gtctgatcta tgaaagattg caggtggcga ttgagaacgg gagattgatg 5520 gatgtgatag actcgtattt tctggaattt tcattcgcct acaaattagg tgagaggctc 5580 tattcacatc ttgaaatcga acagctaaat tatcaccaag tcttgacaag gtttttcata 5640 agaaacaagc atcttttgag aggtgactct agacacaaca tttcagagct tgagtggtta 5700 tctgacgaag atggcgatga tgataagggg tcgaaaattg aagatcgcag aaggggatat 5760 tccaattgct ggggtgaaaa gctccagaat ctattctgac gtgagtccct tcagaagagc 5820 ctctgacctt atgattcact ggaatgagtt cgtttttaag gtcatgccgg aagacatagc 5880 gggggatggt ttcagattgg cttctatacc cgtcataccc tcctcagagg ttcaggcggt 5940 gctaaggaaa agggagagca ccaattacgt gcactggggg gcattatcaa tatcaattga 6000 tgcgttgttc aggaaaaatg ctggggtgtc cggatggtgc tacgtgtacg ataacagatg 6060 ggagacattt gagcaagcaa tattgcagaa atttcatttc aatctggaca gtggttcagc 6120 aactttggtg acatcaccaa atttcccggt ttcattggat gatccaggtc tgtcaaactc 6180 aatcagtgtg gctgtaatgt ttgaaaacct caatttcaag ttggaaagct accctataag 6240 tgtgagggtg ggtaacatgt gcagattttt cgacagcttt ctgagtagtg tgaagaatag 6300 gactgattca aactttctgc tagaggccgc aaatgcggat ccgttgggtg tcggagcctt 6360 tgggtttgag caagatgatc aagtcagtga gttgtttaat tacatccaaa ccgcaccaac 6420 tcaagccata aaatcaaggg agcatgagat tccaaggggt ctgttcggga tgatgggcaa 6480 gaaaaaggtg aagtcattcg agtttgcctc cggctcaagg agcatggaga agagaaggcc 6540 acaaaggggc agaccattgg agaggccata cagccagaga gttactcctg gatttaggtc 6600 ccaggatgag aaaattgaac atcaaggatt atcaactgat agtgattttg aaaattttct 6660 caaaagcaaa gggagggaca aagctggacc aaaatccctt gcttctgagg ggtcatccgt 6720 ggataacata actgcgagag aatttcagtt tgctcgacaa aatcaggaga aggagaatgg 6780 cggcagtgct caatcttcaa ctaaaggtag acgcagagct gaaagcgttc ctggccgcag 6840 agggcaggcc ccttcatgga aagacagggg caatactgga acagacattg gagtccatct 6900 tcgcgaacat agcaatccag ggaacctcgg agcagacgga gtttctcgat gtgatggtgg 6960 aggtcaaatc tatggaggat cagaaagtca tcgggtccta caatctgatg gaggtggtca 7020 atatgatcaa ggccttcaag actacctctt cggatccgaa cattagcaac atgactttcc 7080 gccaggtgtg tgaggctttc gcaccggaag cgaggaacgg gttggtgaaa ttaaagtaca 7140 aaggggtctt tactaacctc tttacgacca tgccggaagt tggaagcaag tacccggagc 7200 tgatgtttga tttcaacaag ggccttaaca tgttcatcat gaataaggct cagcaaaaag 7260 tcataaccaa tatgaatcgg cgtcttttac aaactgaatt cgcaaaaagt gaaaatgagg 7320 cgaagctctc atctgttaca actgatcttt gcatttagtt tgtttaagaa gtttggtttg 7380 ataaataaaa taaataaata gtgtgttgtg tgtttaaata tatttgcatt gagtgtattt 7440 aaattaaata aacgaactct cgaacccatg aaagagtaaa aaggggtcat ggtatttgat 7500 tggagtgttt agacttataa taaat 7525 //