ID HE978837; SV 1; linear; genomic RNA; STD; VRL; 6478 BP. XX AC HE978837; XX DT 22-JAN-2013 (Rel. 115, Created) DT 24-APR-2015 (Rel. 124, Last updated, Version 2) XX DE Apple stem grooving virus clone ASGVp12 complete genome XX KW complete genome. XX OS Apple stem grooving virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6478 RA Dhir S.; RT ; RL Submitted (15-AUG-2012) to the INSDC. RL Dhir S., Institute of Himalayan Bioresource, Technology, Floriculture RL Division, IHBT, CSIR, Palampur., Himachal Pradesh. 176061, INDIA. XX RN [2] RX DOI; 10.1016/j.jviromet.2014.11.017. RX PUBMED; 25486082. RA Dhir S., Walia Y., Zaidi A.A., Hallan V.; RT "A simplified strategy for studying the etiology of viral diseases: Apple RT stem grooving virus as a case study"; RL J. Virol. Methods 213:106-110(2015). XX DR MD5; bab6c8629e375babf388b3cf46925c35. DR EuropePMC; PMC4118050; 24998458. XX FH Key Location/Qualifiers FH FT source 1..6478 FT /organism="Apple stem grooving virus" FT /host="Malus x domestica cv. Red Chief" FT /mol_type="genomic RNA" FT /country="India:Palampur" FT /isolation_source="host leaves" FT /collected_by="Sunny Dhir" FT /collection_date="May-2011" FT /identified_by="Sunny Dhir" FT /clone="ASGVp12" FT /db_xref="taxon:28347" FT CDS 34..>6333 FT /gene="RNA polymerase" FT /product="hypothetical protein" FT /db_xref="GOA:L8BSJ0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:L8BSJ0" FT /protein_id="CCK73183.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICIPSLLSSFRSVAFFSLRE FT NKVNNFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFSSFRDRVIGLRDQCLMRN FT KFPKVLFLHDELHFLSPFDVAFLFETIPEIDRVIATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGGHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVVALDKVNFIETRFHARMFEIAEAIGVSLSLLGK FT RFDYEAESEEYFSENGYLFMPSRTNPSRNWILNSGSVKIDFQKLQGARRFRLRRDFVDL FT IARRETPRKQLFLESAQTLQSTSKSVEENMDSGVRSDESSKEIQSLEVSCVPMSTEDGQ FT GFERFNSNRLDNSFEPEVIRLPKRKKKNDCVFKAISAYLGIDVQDLLSSLVNEDISDEL FT LECIDEDKGLSHEMIEEVLVTRGISMVYTSDFKEMAVLNRKYGVNGKMYCTIRGNHCEL FT SSKECFIRLLKEGGEAQMSNENLNADSLFDLGKFVHNRERATKLAKSMARGTTGLLTEF FT DPEFCKGMVTLSEMFPEHSLRCRLRWFRKNVQGPEWINYTQASKGCLLVPENCWPTRLK FT FNSEGQSCQVHTWETASKKIDGTFMEVFVDEIGLYPTGYLTLLQMCAFRRIIKGQSEKF FT LRGKLAELSKTCLNIGCFGDPLQMRYYSAEDTNLLDKTHELDLMVQTIKHKYLLQGYRF FT GQWFQELINMPTRVDDSKFSRKFFADISSVKTEDYGLILVAKREDRGTFAGRIPVATVS FT ESQGMTISKRVLICLDQNLFAGGANAAMVAITRSKVGFDFILKGNSLKEVQKMAQKTLW FT QFILEGKTIPMERIVNMNPGASFYEGPLDVGNSSIQDKASHDLFIMPFINLAEEEVDPE FT EVVGDVIEPVEWFKCHIPVFDTDPMLAEIFDKVAAKEKREFQSILGFSNQFLDMEKNGC FT KIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFEAQGKELLSEFM FT SMLPFEFKVNIKDIEEGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMKSQYCT FT KEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIERAFLRSCGESYYIHSGKNFFCLDSF FT VTKNAEVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCR FT LGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLKRRKGE FT KATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDN FT YLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGEGIGSE FT WQSSMSTISSRKSSQQISKLMPSLPRNCTKMPLFLSRMCSTVSSDLNQMSRCLQGQVMG FT SCCLISNYLMTQRSTPLERGATNTSICIMESFWSGLGLCYRTLGEWKGGSLCMTVHAWI FT QKGVTFVPTYSNLSPTVVTLDLDRNIAYPQPMQIWLKGSDLEWILIVHNTSRTQSCLLS FT TLGLHTGVSIQPDSWKLRLVIQDGLHRQSAAVRHLNSMRKSRWQSWITNHRCFWKKVHQ FT TCILKRECLEVTKSEGHALSLQKGGQTQGYKKREDLGPSQLESKDLEKMSLEDVLQQAR FT RHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGRELYLLLCNHYCKYLFGNIAVFG FT SSDKTQFPAVGFDTPPVHYNLTTIPKEGETEEQRKAREGSSGEKTKIWRIDLSNVVPEL FT KTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSRGLATNIYKKWPKAFEKSPWVA FT FDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT CDS 4770..>5730 FT /gene="movement protein" FT /product="hypothetical protein" FT /db_xref="GOA:L8BSJ1" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:L8BSJ1" FT /protein_id="CCK73184.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSPRSGDGLVLSDFKLFDDTEIDSIRKRSNKYKYLHYGVILVGIRAMLPNFRG FT MEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYWCVNSARFLETKTGDSGWAAQAISGCEALKFNEEIKMAI FT LDHKSPLFLEEGAPNVHIEKRMFRGDKVRRSRSISAKRGPNSRLQEKRGFRSLSARIER FT FGENEFGRRASTSETPPGRSVSVEDTHRSGKGTSDGSSP" XX SQ Sequence 6478 BP; 1924 A; 1222 C; 1515 G; 1817 T; 0 other; atttaacagg cttaatttcc gcgctttacg tcaatggctt tcacttacag aaatcccctc 60 gaaattgcaa tcaataagct tccaagcaag cagtctgatc aactgctttc tttaaccaca 120 gacgagattg aaaagacctt agaagtgact aatcgcttct tctctttttc tatcactcca 180 gaagatcaag aattgttgac caagcatggt ctaacacttg cacccattgg atttaagtca 240 cattcccatc caatatccaa aatgatagaa aatcaccttc tgtacatatg cattccaagt 300 cttttatctt cttttagatc cgtagccttt ttctcgctta gagaaaataa agtcaataat 360 tttcttaaga tgcactcagt tttttcacat ggaaaaatca agtctctagg tatgtacaac 420 gccatcattg atggaaaaga taaatacagg tatggcgaag tttccttttc ttcctttaga 480 gacagggtga ttggcctcag ggatcagtgc ctcatgcgta ataaatttcc aaaagttctc 540 tttctccacg atgaacttca tttcctaagc cctttcgacg ttgcttttct atttgagaca 600 atcccagaga ttgatagagt catagcaact actgtttttc cgattgaact gctttttggg 660 gacaaggttt caaaggagcc cagagtttac acctacaagg tccatggttc ctccttttca 720 ttctatccag atggtgtagc ctccgagtgc tatgagcaaa atcttgcaaa ctccaaatgg 780 ccgttcactt gtagtggaat tcagtgggct aacaggaaaa taagggttac taagttgcag 840 agcctctttg ctcatcacgt attttcattt gatagaggca gggcttgcaa cgaatttaac 900 cactttgaca agccgagttg tctccttgca gaagaaatgc gccttttgac caaaaggttt 960 gataaggcag tcattaatag gagtacggtt tcttctttga gcacttatat ggcttgtctc 1020 aagaccgcca atgcagcttc tgctgtcgcc aagttgaggc aactagagaa aagggacctc 1080 tatccggatg aactaaactt cgtttattcc tttggggggc atttcaaaaa ttttggaatg 1140 agggacgatt ttgatgtgtc agtcctgcaa tgggtgaagg acaaattctg tcaagttatg 1200 cctcacttca ttgctgccag tttctttgag ccaactgagt tccatttgaa tatgcgaaaa 1260 ttgttgaatg acctggccac taaagggata gaggttccac tttctgtagt ggctttagat 1320 aaggtaaatt ttatagagac tagatttcat gccagaatgt tcgaaattgc cgaagccatt 1380 ggagtcagtt taagtctact tggaaaacgg tttgactatg aagctgaaag tgaagaatat 1440 ttttcagaaa atggctatct tttcatgcct tcaaggacaa atccaagtag aaactggatc 1500 ttaaactctg ggtctgtcaa aatcgatttc cagaagttgc agggggcaag gaggttcaga 1560 ctgagaagag atttcgtaga tttgattgct agaagggaga cccctcgaaa gcaactattt 1620 ctcgagtcag ctcaaactct ccaatcaacg tctaaaagtg tggaggagaa catggacagt 1680 ggagtcagat ccgacgaaag cagtaaagaa atacagtcac tcgaggtgtc ctgtgtcccg 1740 atgtccactg aagatgggca aggctttgaa aggttcaatt ccaatcgact tgataattcc 1800 ttcgagccag aagtaatcag acttccgaaa aggaagaaaa agaatgattg tgtttttaaa 1860 gccatctctg catacctcgg cattgatgtt caggacctct tgagctcttt ggtgaatgaa 1920 gacatatccg atgagttgct tgaatgcata gatgaggata aaggcctgtc gcatgagatg 1980 atagaggaag ttctggtgac gagagggatt tctatggtct acacttcaga tttcaaagaa 2040 atggcagttc tcaacaggaa gtatggagtt aatggaaaaa tgtactgcac aatcaggggg 2100 aatcattgtg agctgagttc aaaggaatgc ttcatcagat tgctgaagga gggtggtgaa 2160 gcacaaatgt ctaatgagaa tttgaatgct gactccttgt ttgatcttgg aaagttcgtg 2220 cacaacagag aaagggccac aaaattggca aaatcgatgg ctaggggcac aactggtctt 2280 ttgactgaat ttgatccaga attttgtaaa ggtatggtca cactttcgga aatgtttccg 2340 gagcactctc ttcgttgtcg acttcgctgg ttccggaaaa acgtacaagg tcctgaatgg 2400 atcaactaca cacaagcgtc aaaaggatgt ttattagttc cagagaattg ctggccgacg 2460 aggttgaaat tcaattcaga gggacaatct tgccaagtcc atacttggga aacagcctct 2520 aaaaagattg atggaacctt tatggaggtc tttgtggatg aaattggcct ttaccccact 2580 ggatatctca ctctcctaca aatgtgtgct ttccgaagga tcattaaggg gcaaagtgaa 2640 aagtttttaa gaggaaagct tgctgaactt tcgaagacct gtttgaatat agggtgtttt 2700 ggtgacccat tgcaaatgag gtattattct gcagaggata caaaccttct agacaagaca 2760 catgagcttg atctaatggt ccaaaccatc aaacacaagt accttcttca agggtacagg 2820 ttcggccagt ggttccagga gctgataaac atgccaacta gagtggacga ttcgaaattt 2880 tcaagaaaat tttttgcgga catttctagt gtcaaaaccg aggattatgg actcatactt 2940 gtcgccaaga gggaagacag ggggacgttt gccgggagaa tacctgtggc tacagtcagc 3000 gaatcacagg gaatgaccat aagcaagagg gtgctaatat gcttagacca aaatctgttt 3060 gccgggggag ccaatgccgc catggttgcg atcactagat cgaaagttgg gtttgacttt 3120 attctcaaag ggaattcact aaaagaggtg cagaaaatgg cccaaaaaac tttgtggcaa 3180 ttcatacttg aaggaaagac cataccgatg gaaagaattg tcaatatgaa ccccggagcc 3240 agcttttatg agggcccctt ggacgttggc aactcgtcca ttcaggacaa agcctcacat 3300 gatttgttca taatgccttt tattaattta gctgaagaag aagttgaccc tgaggaagtc 3360 gtcggagatg ttattgaacc agttgagtgg ttcaagtgcc atataccggt ttttgataca 3420 gacccgatgc ttgcagagat atttgacaaa gtggcagcaa aggaaaaaag agaatttcag 3480 tccatactcg ggttttcaaa tcaatttctt gacatggaaa agaatggatg caaaatcgat 3540 attttgcctt ttgctagaca gaatgttttc ccccaccatc aagcttcaga tgacgtcacc 3600 ttttgggcag gtgttcagaa gagaataagg aagtcaaatt ggagacgaga aaagtcaaaa 3660 tttgaggagt ttgaagctca gggaaaggaa ctgctcagtg aattcatgtc aatgttgccc 3720 tttgaattca aagtgaacat caaggacatt gaagaaggtg aaaaaagctt tcttgaaaag 3780 agaaagttaa agtctgaaaa gatgtgggcc aaccactcag aaagatctga cattgactgg 3840 aaacttgacc acgcctttct atttatgaaa tctcaatatt gcacaaagga aggcaaaatg 3900 ttcactgagg caaaagctgg tcaaacctta gcatgtttcc aacacattgt tctgtttaga 3960 tttggtccca tgcttcgagc aattgaaagg gcttttctta gaagttgtgg agagtcatac 4020 tacatacatt caggaaaaaa ctttttctgc ttggacagct ttgtgacaaa aaacgcagaa 4080 gtctttgatg ggttttctat tgaatctgac tacacggctt ttgactcatc tcaggatcac 4140 gtaattttgg cctttgaaat ggcacttttg cagtacctag gggtgtccaa agagtttcag 4200 ttggattatt tgagattgaa attgaccctt ggctgcagac ttggatctct agccattatg 4260 aggttcactg gggaattctg cacttttttg ttcaatacat ttgcaaacat gcttttcacc 4320 cagttaaaat acaaaattga cccgaggaag cataggattc tatttgctgg agatgacatg 4380 tgctctctaa gttctctcaa aagaagaaaa ggggaaaagg caacaagact gttgaagagc 4440 ttttctttaa ctgctgtgga agaggtacgg aagtttccaa tgttctgtgg gtggtactta 4500 agcccatatg ggattatcaa gtctccaaag ttgttgtggg ccaggatcaa aatgatgagt 4560 gaaagacaac ttttaaagga atgtgtggac aactatctgt ttgaagccat atttgcctac 4620 agattaggtg agaggcttta cacaattttg aaagaagagg actttgagta tcattacctt 4680 gttataaggt ttttcgtcaa aaattctaag ttgctgacag ggttgagcaa aagcctcatt 4740 ttcgaaattg gtgaagggat tgggtcagaa tggcaatcgt caatgtcaac catttcctca 4800 aggaagtcga gtcaacagat ctcaaaattg atgccatctc ttcctcggaa ttgtacaaag 4860 atgccacttt ttttaagccg gatgtgctca actgtatcaa gcgatttgaa tcaaatgtca 4920 aggtgtctcc aaggtcaggt gatgggctcg tgttgtctga tttcaaacta tttgatgaca 4980 cagagatcga ctccattaga aagaggagca acaaatacaa gtatctgcat tatggagtca 5040 ttctggtcgg gattagggct atgctaccga actttagggg aatggaaggg agggtcattg 5100 tgtatgacgg tgcatgcttg gatccagaaa ggggtcacat ttgttcctac ttattcaaat 5160 ttgagtccga ctgttgttac tttggactta gaccggaaca ttgcctatcc acaaccgatg 5220 caaatttggc taaaaggttc agatttagag tggattttga ttgtccacaa tacgagcagg 5280 acacagagct gtttgctctc gacattgggg ttgcatactg gtgtgtcaat tcagccagat 5340 tcttggaaac taagactggt gattcaggat gggctgcaca ggcaatcagc ggctgtgagg 5400 cacttaaatt caatgaggaa atcaagatgg caatcctgga tcacaaatca ccgctgtttc 5460 tggaagaagg tgcaccaaac gtgcatattg aaaagagaat gtttagaggt gacaaagtca 5520 gaaggtcacg ctctatctct gcaaaaaggg ggccaaactc aaggctacaa gaaaagagag 5580 gatttaggtc cctctcagct agaatcgaaa gatttggaga aaatgagttt ggaagacgtg 5640 cttcaacaag cgagacgcca ccgggtagga gtgtatctgt ggaagacaca catagatccg 5700 gcaaaggaac ttctgacggt tcctccccct gaaggattca aggaaggtga aagctttgaa 5760 ggcagagagc tttacctcct tctctgcaac cactattgta aatatttatt tggtaatatt 5820 gctgttttcg ggtcatctga caagacccag tttcccgctg ttggatttga tacccctccg 5880 gttcattaca atctgacaac gatcccaaaa gaaggggaga ctgaagagca aaggaaagcc 5940 agagaaggtt cgtctggcga aaaaacaaaa atttggagaa tcgacctgtc aaatgttgta 6000 cccgaattga aaacttttgc tgccacttcc aggcagaact ctttgaacga atgtacgttc 6060 agaaagcttt gtgagccatt tgctgatttg gctcgggaat ttcttcatga aagatggtca 6120 aggggacttg ccaccaacat ttataagaaa tggcccaaag cttttgaaaa gagcccttgg 6180 gtggcttttg attttgccac cggtcttaaa atgaaccgtc taacgcctga tgaaaaacag 6240 gtaatagaca gaatgactaa gaggcttttt cgtactgaag gacaaaaggg ggttttcgag 6300 gcgggttcgg agagcaatct ggaactggag ggttagaagt cgtgtgaaat tccgcaaact 6360 tggtcgcggt cttgcaggtt gacatgcctg cctttatact taattaaagg gttcccccgg 6420 ttttctgagc atttccgggt tagtgtggtt tttctagagt ctagagtttg tccactct 6478 //