Dbfetch

Dbfetch

ID   HE971537; SV 1; linear; genomic RNA; STD; VRL; 539 BP.
XX
AC   HE971537;
XX
DT   25-NOV-2012 (Rel. 114, Created)
DT   25-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Cucumber mosaic virus partial ORF2a gene and ORF2b gene, segment RNA2,
DE   genomic RNA, isolate BC2.5/09
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-539
RA   Jacquemond M.;
RT   ;
RL   Submitted (26-JUL-2012) to the INSDC.
RL   INRA, Station de Pathologie Vegetale, Domaine Saint Maurice, BP 9484143
RL   Montfavet Cedex, FRANCE.
XX
RN   [2]
RA   Ben Tamarzizt H., Montarry J., Girardot G., Fakhfakh H., Tepfer M.,
RA   Jacquemond M.;
RT   "Cucumber mosaic virus (CMV) populations in Tunisian pepper crops are
RT   mainly composed of virus reassortants with resistance-breaking properties";
RL   Unpublished.
XX
DR   MD5; 46a06df6bfc107c41a8048e2d39f89d9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..539
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA2"
FT                   /host="Capsicum annuum"
FT                   /isolate="BC2.5/09"
FT                   /mol_type="genomic RNA"
FT                   /country="Tunisia"
FT                   /db_xref="taxon:12305"
FT   CDS             <1..384
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="ORF2a"
FT                   /product="RNA-dependent RNA polymerase, RdRp"
FT                   /db_xref="GOA:K8DSI4"
FT                   /db_xref="UniProtKB/TrEMBL:K8DSI4"
FT                   /protein_id="CCK33304.1"
FT                   /translation="AFKKYTANFQSYKELYYSDRRQCELINSFCSTEFRVERVNSNKQR
FT                   KKYGIERKCNDKRRTPTGSYGGGEEAETKVSQTESTGTRSQKSQRESAFKSQTIPLPTV
FT                   LPGRWFGTDRVMLPCERGGVTRV"
FT   CDS             143..475
FT                   /transl_table=1
FT                   /gene="ORF2b"
FT                   /product="RNA silencing suppressor"
FT                   /db_xref="InterPro:IPR004946"
FT                   /db_xref="UniProtKB/TrEMBL:K8DS24"
FT                   /protein_id="CCK33305.1"
FT                   /translation="MESNASAMTNVELQLARMVEAKKQRRRSHKQNRRERGHKSPSERA
FT                   RSNLRLFRFLPFYQVDGSELTGSCCHVNVAELPESEASRLELSAEDHDFDDTDWFAGNE
FT                   WAEGAF"
XX
SQ   Sequence 539 BP; 144 A; 121 C; 143 G; 131 T; 0 other;
     gcctttaaga agtataccgc taatttccag tcctacaaag aactctatta ttcagatcgt        60
     cgtcagtgcg aattgatcaa ttcgttttgt agtacagagt tcagggttga gcgtgtaaat       120
     tccaacaaac agcgaaagaa atatggaatc gaacgcaagt gcaatgacaa acgtcgaact       180
     ccaactggct cgtatggtgg aggcgaagaa gcagagacga aggtctcaca aacagaatcg       240
     acgggaacga ggtcacaaaa gtcccagcga gagagcgcgt tcaaatctca gactattccg       300
     cttcctaccg ttctaccagg tagatggttc ggaactgaca gggtcatgct gccatgtgaa       360
     cgtggcggag ttacccgagt ctgaggcctc tcgtttagag ttatcggcgg aagaccatga       420
     ttttgacgat acagattggt tcgccggtaa cgaatgggcg gaaggtgctt tctgaaacct       480
     ccccttccgc atctccctcc ggttttctgt ggtgggagct gagttggcag tgttgctat        539
//