ID HE962478; SV 1; linear; genomic RNA; STD; VRL; 3358 BP. XX AC HE962478; XX DT 06-SEP-2012 (Rel. 114, Created) DT 06-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Cucumber mosaic virus RNA1 complete segment, genomic RNA, strain Vir XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3358 RA Jacquemond M.; RT ; RL Submitted (06-JUL-2012) to the INSDC. RL INRA, Station de Pathologie Vegetale, Domaine Saint Maurice, BP 9484143 RL Montfavet Cedex, FRANCE. XX RN [2] RA Jacquemond J.M.; RT "Sequence of infectious cDNA clones of RNAs1, 2 and 3 of CMV strain Vir"; RL Unpublished. XX DR MD5; b22ac8fe39088802e4629d4bfa6d953e. XX FH Key Location/Qualifiers FH FT source 1..3358 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Capsicum sp." FT /strain="Vir" FT /mol_type="genomic RNA" FT /country="Italy:North Italy" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /transl_table=1 FT /product="helicase" FT /db_xref="GOA:J7QUA8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7QUA8" FT /protein_id="CCJ09630.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRNAFSETEDATSLSGKIDSSGFTGVRKFKTMVAFDFINESTMSYIH FT DWENIKSFMTNQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASMDLVKWKTVRVLTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDIDDYHYIGFAILLHTKMKYEQLGKMFDMWNASSISKWFAALTR FT PLRVFFSSVVRVLFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDSPETLSPTSDDTADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNVHFSTGRWMRPVPEGVVYSVGFNERGLGPKSEGELYVVNGECVVSNSES FT LSSITRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPTTDMIVTANKKSAQDVRMALFQS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTRW FT VSQSKVKRSITSRAVASVTLVDLDPSRFYVTMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGMLGGDLIAEC FT IARA" XX SQ Sequence 3358 BP; 842 A; 736 C; 832 G; 948 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctccc ctgtaaaata accctttgaa 60 aacctctctt ttctaagctt ttctttgtaa ttcctatggc gacgtcctcg ttcaatatca 120 atgaattggt agcctcccac ggcgataaag gattgctcgc gaccgccctc gttgataaga 180 cagctcatga gcagctcgag gagcaattac aacatcaacg tcggggccgt aaggtctaca 240 ttcggaatgt tctgagtgta aaggattccg aggtcatccg gaatcggtat ggagggaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caagacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgct 480 gttccccttg cttgggtatc cgcgataaaa tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttttgcactc 600 atcctgctgc tgattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggacta tgtgaagcaa tgaacgctca cgggaccact attttgaagg 720 gaacgatgat gttcgatggc gcgatgatgt ttgacgacca gggcgtaata cccgaactta 780 attgtcagtg gaggaagatt aggaatgctt tctccgaaac tgaagacgcc acgtctttgt 840 ctggaaaaat tgattcttca ggattcaccg gcgtgcgtaa gtttaagact atggtggctt 900 ttgattttat caatgagtct accatgtctt atattcatga ctgggagaat ataaaatcgt 960 ttatgacgaa ccagacgtac tcgtataaag ggatgactta tggcatcgag cgttgtgtca 1020 ttaatgcggg tatcatgacg tataagatca tcggtgtgcc tgggatgtgt ccgcccgaac 1080 tcattcggca ttgtatttgg ttcccctcta ttaaagacta tgttggtcta aagattcccg 1140 cgtcgatgga cttggttaag tggaaaacag tgcgagtttt aacgtcaaca ctacgtgaaa 1200 ctgaagagat tgctatgagg tgttacaatg ataagaaagc atggatggaa caatttaagg 1260 ttatcttagg tgttctttcc gctaagtctt ccaccattgt tatcaatggt atgtccatgc 1320 aatctggcga acggatagat attgacgact atcattacat aggattcgcc attcttcttc 1380 acacaaaaat gaagtatgaa cagctaggaa aaatgtttga tatgtggaat gcttcgagta 1440 tttcgaagtg gttcgcagcg ctgactcgac cgctgcgtgt gtttttctct agcgttgttc 1500 gcgtgctgtt cccgactttg agaccccgcg aggaaaagga attcctgatc aagctctcca 1560 ccttcgttac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catccgctgc atatgttgcc acgcaggctg ttaccgatgg gaaagttttg gctgcgcaga 1680 aagccgagaa gctcgctgag aagcttgcac aacccgtgat tgaggtatcg gacagtcctg 1740 agacgctatc tccaacgtct gatgatacag ctgatgtttg tggaaaggag caagaggttt 1800 cggaacttga ctctttatca gctcagacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgctat gttagagtat gccgcttatg agaaacagct tcatgacact acagtgtcta 1920 atctgaaacg catctggaac atggcaggtg gtgatgataa gagaaattcc ctcgaaggca 1980 atttgaaatt tgtctttgac acgtatttca ctgttgaccc catggtgaat gttcactttt 2040 caacgggtcg gtggatgcgt cccgtaccag agggagtcgt ttattctgtt ggttttaatg 2100 aacgtggctt aggcccgaaa tctgagggag agctatacgt cgttaatggt gagtgtgtgg 2160 ttagtaatag cgagtcttta tcttctatca cgcgctcgtt acaagctcca actggaacca 2220 tcagtcaagt cgatggggtc gcgggttgtg ggaaaaccac ggcaattaaa tccatctttg 2280 agccgaccac cgacatgatc gtcactgcga ataagaaatc tgcccaggat gtgcgtatgg 2340 cacttttcca atcgtcggac tccaaggaag cctgcacctt cgtccggacg gccgactctg 2400 ttttgcttaa tgaatgtccg actgttagca gagtattggt cgacgaagtt gttttgctgc 2460 attttggtca attatgcgcc gttatgtcaa aattgaaggc tgtgagagcc atatgtttcg 2520 gggattctga gcaaattgct ttttcctcgc gagatgcctc gtttgacatg cgtttctcta 2580 agattattcc tgatgaaact agtgatgcgg acaccacatt ccgtagtcca caagatgtcg 2640 tgccgcttgt gcgtttgatg gctacgaagg cccttccgaa aggaactcat tcgaaataca 2700 ccagatgggt ttctcaatct aaagtgaaga gatctattac atctcgtgcc gtcgcaagtg 2760 tgaccctggt tgatctagat ccgtctaggt tttatgtcac gatgacgcaa gctgataaag 2820 cttcactgat ttcaagggcg aaagagatga acttaccgaa gaccttttgg aatgaaagaa 2880 taaaaaccgt gcatgagtcc caaggtattt ctgaggacca cgtcactttg gtaagattga 2940 agagcacaaa gtgtgacctg tttaaaaaat tttcttattg tcttgtcgct ttgactagac 3000 ataaggtcac cttccgctac gaatattgtg gtatgttggg cggcgattta atcgccgaat 3060 gtattgcgcg tgcttagcgg catccctcct ctaggtggga tctgagttgg cggtaatcta 3120 caaaccgtct gaagtcacta aacgctttgc ggtgaacggg ttgtccatcc agcttacggc 3180 taaaatggtc agtcgcggag agatctgcgc cagtagactt acaagtctct gagatgcctt 3240 tgaaaccatc tcctaggttt cttcggaagg acttcggtcc gtgtacttcc agcacaagat 3300 gctggtttca gggtacgggc atccccccac tttagtgggg gtctcttaaa ggagacca 3358 //