ID HE863667; SV 2; circular; genomic DNA; STD; VRL; 2760 BP. XX AC HE863667; XX DT 22-JUN-2012 (Rel. 113, Created) DT 05-JUL-2012 (Rel. 113, Last updated, Version 2) XX DE Clerodendron yellow mosaic virus complete genome, clone SA23 XX KW complete genome. XX OS Clerodendron yellow mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC revised by [4] RA Tahir M.; RT ; RL Submitted (20-JUN-2012) to the INSDC. RL Tahir M., National University of Sciences &, Technology, Atta-ur-Rahman RL School of App, Atta-ur-Rahman, National University of, Sciences & RL Technology44000, PAKISTAN. XX RN [2] RA Anwar S., Tahir M.; RT "First report of Clerodendron yellow mosaic virus infecting Croton in RT Pakistan"; RL Unpublished. XX RN [3] RA Anwar S.; RT "Characterization of begomovirus, development of binary construct of RT artificial microRNA and infectious clones against ToLCNDV"; RL Unpublished. XX RN [4] RP 1-2760 RA Tahir M.; RT ; RL Submitted (05-JUL-2012) to the INSDC. RL Tahir M., National University of Sciences &, Technology, Atta-ur-Rahman RL School of App, Atta-ur-Rahman, National University of, Sciences & RL Technology44000, PAKISTAN. XX DR MD5; 7f6407d98d31103ee7f2095c487c9ffc. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Clerodendron yellow mosaic virus" FT /host="Croton sp." FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /isolation_source="host leaves" FT /collected_by="Muhammad Tahir" FT /collection_date="10-May-2012" FT /identified_by="Muhammad Tahir" FT /clone="SA23" FT /db_xref="taxon:326811" FT CDS 121..477 FT /gene="V2" FT /product="precoat protein" FT /function="movement" FT /db_xref="GOA:A4ZRZ9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4ZRZ9" FT /protein_id="CCJ09386.1" FT /translation="MWDPIVNDLPETVHGFRSMLAIKYLQAVENTYSPDTLGYDLVRDL FT ISVLRARNYVEATRRYHNFHARIKGATTFELRKPICQPCHCPHCGRHKKTGLGQQAHEQ FT EAQMVSNLQKPRCA" FT CDS 281..1051 FT /gene="CP" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:I7LFE0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I7LFE0" FT /protein_id="CCJ09387.1" FT /translation="MSKRPGDIIISTPASKVRQRLNFESPFANRAIAPIVGVTRRQAWV FT NRPTNRKPKWYRIYKSPDVPRGCEGPCKVQSFESRHDISHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRGRRPIDKPQDFGDVFNMFDNEP FT STATVKNVNRDRYQVLRKWYRTVTGGQYASKEQALVRRFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1048..1452) FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:I7L8P4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7L8P4" FT /protein_id="CCI74072.1" FT /translation="MDSRTGESITAAQAMNGVYIWGVPNPLYFRILSHLDRPFFRNHDI FT ITIQIRFNHNLGRALGLHKCWLTFRIWTSLTPQTGRFLRVFRTQVLRYLDNLGVICINN FT VFKAVDHVLYNVINNTIDVEISHEIKFLLY" FT CDS complement(1193..1600) FT /gene="TrAP" FT /product="transactivator protein" FT /function="transcription activator" FT /db_xref="GOA:I7KG07" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I7KG07" FT /protein_id="CCI74073.1" FT /translation="MQNSSPSKSHSSQVPIKVQHRIAKRRAFRRKRVDLNCGCSYYVSL FT NCHNHGFTHRGVHHCSSSNEWRVYLGGSKSPLFQDLKPPGPTILPEPRHNNNPDPVQPQ FT PGESTGTSQMLANLPDLDEFNSSDWAFLTGL" FT CDS complement(1494..2588) FT /gene="Rep" FT /product="replication association protein" FT /function="replication initiation" FT /db_xref="GOA:I7JU14" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7JU14" FT /protein_id="CCI74074.1" FT /translation="MPRINRFSVSAKNIFLTYSKCPIPKEQMLELIKNISCPSEKLFIR FT VAQEKHRDGSLHLHALIQFKGRAKFRNERHFDVTHPNTSPQFHAHIQGARSSSDVKRYI FT EKDGDYVEWGRFQIDGRSARGGQQTANDAAAEALNSGSAEAALNVIREKLPRDFIFQYH FT NLKSNLDRIFAPPLEVYVSPFLSSSFDRVPEELEEWVSENVKSAAARPYRPNSIVVEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKIYSNDAWHNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKQWAIKNAKFITLQEPL FT FSGTNQGPTQNSQEESIPQKTSGP" FT CDS complement(2174..2431) FT /gene="C4" FT /product="C4 protein" FT /function="symptom induction" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7L4M0" FT /protein_id="CCI74075.1" FT /translation="MGLCISMLSYNSRVEPSSEMRDISMSLIPIPPPNSMRTSRELDPA FT LMSRDTSRRTEITSNGVDFRSMEDLLEEVNRQLTMLQLRH" XX SQ Sequence 2760 BP; 749 A; 588 C; 620 G; 803 T; 0 other; accggatggc aacggccccg cgtgtgggac ccaccactaa ccaatgaaaa cgctccttga 60 aagctacgtt atcttgattt ttcgttattt aacacgtgtc gtgtgaatat tggttgcatc 120 atgtgggatc ctatcgtgaa cgatctacct gaaaccgtac atgggtttcg ttctatgctt 180 gcaatcaagt atctacaggc tgtagaaaat acgtattctc cggatacgct gggatacgat 240 cttgtacgtg atttgatatc tgttctacgt gcaagaaatt atgtcgaagc gaccaggaga 300 tatcataatt tccacgcccg catcaaaggt gcgacaacgt ttgaacttcg aaagcccatt 360 tgccaaccgt gccattgccc ccattgtggg cgtcacaaga agacaggcct gggtcaacag 420 gcccacgaac aggaagccca aatggtatcg aatttacaaa agcccagatg tgcctagggg 480 ctgtgaaggc ccatgcaagg tccaatcatt cgagtccaga catgatatat ctcatattgg 540 caaggtgatg tgcgtaagcg atgtcacacg tggcattggt cttactcatc gagttggcaa 600 gagattttgt gtaaaatctg tgtatgtttt gggaaagatc tggatggatg aaaacataaa 660 gactaagaac cacactaata gtgtgatgtt ctttttggtt cgtggtcgga gaccaatcga 720 caagccacaa gattttggtg acgtttttaa tatgtttgat aacgagccca gtacggcaac 780 tgtgaagaac gttaatcgcg atcgatatca ggttttacgt aagtggtatc ggacggtcac 840 tggtggtcag tacgcgtcta aggagcaggc attagttagg agatttatta gggttaataa 900 ttatgttgtt tataatcaac aagaagctgg gaaatacgag aatcatactg agaacgctct 960 tatgttgtat atggcatgca ctcatgcctc aaaccccgtg tatgctactc tgaagatacg 1020 gatatatttc tatgattctg tatcaaatta atacaaaaga aattttattt catgagagat 1080 ctcaacatca atcgtgttgt ttattacatt gtacaataca tgatctactg ccttaaacac 1140 gttattaata caaataacac ctaaattatc taaataacgc aaaacttggg tcctaaagac 1200 ccgtaagaaa cgcccagtct gaggagttaa actcgtccag atccggaagg ttagccaaca 1260 tttgtgaagt cccagtgctc tccccaggtt gtggttgaac cggatctgga ttgttattat 1320 gtcgtggttc cggaagaatg gtcggtccag gtggcttaag atcctgaaat agaggggatt 1380 tggaaccccc cagatataca cgccattcat tgcttgagct gcagtgatgg actcccctgt 1440 gcgtgaatcc atggttgtga cagttgaggc tgacgtaata cgagcagccg cagttaaggt 1500 ccactcgttt tctgcggaat gctctcctct tggctattct gtgttggacc ttgattggta 1560 cctgagaaga gtggctcttg gagggtgatg aattttgcat tcttgatggc ccactgcttg 1620 agtgcagaat tcttttcttc gtccaagaat tctttatagc tggaattggg ccctggattg 1680 cagaggaaga ttgttgggat tccgccttta atttgaactg gctttccgta tttcgtgttt 1740 gattgccagt ccctttgggc ccccatgaac tctttaaagt gtttcaaata atgcggatct 1800 acgtcatcaa tgacgttatg ccaagcatcg tttgaataaa ttttagggct taaatccaaa 1860 tgcccacata aataattatg tgggcctaat gatctggccc atacagtctt ccctgtccga 1920 ctatcgccct cgacgacaat actattaggt ctatacggcc gcgcagcggc actcttcaca 1980 ttctcagaca cccattcttc taactcctca gggactctat caaacgaaga agacaaaaaa 2040 ggactcacat aaacctctaa tggaggtgca aaaatcctat ctaaatttga ttttaaatta 2100 tgatactgga aaataaaatc tcttgggagt ttctccctaa taacatttaa agcagcttca 2160 gcagacccag aatttaatgc ctcagctgca gcatcgttag ctgtctgttg acctcctcta 2220 gcagatcttc catcgatctg aaatcgaccc cattcgacgt aatctccgtc cttctcgatg 2280 tatctcttga catcagagct ggatctagct ccctggatgt gcgcatggaa ttggggggag 2340 gtattgggat gagtgacatc gaaatgtctc tcatttcgga acttggctct acccttgaat 2400 tgtatgagag catggagatg cagagaccca tctctgtgtt tctcttgtgc aaccctaatg 2460 aacagtttct cagatggaca tgaaatgttt ttaatgagct cgagcatctg ttcttttgga 2520 atgggacatt ttgaataagt gaggaaaatg tttttagcgc taactgaaaa cctatttatg 2580 cgaggcatgt ttgaccggaa gtgtccccaa ttgaccactc tctctaaaac tcagggaatt 2640 ggggacactg gggacgcatt tatactagtg tccccaaatg gcataatcgt aatttttgga 2700 tctgaaattc aaatctggct cgccacgtgg tcctcaccgt tgccatccga ttataatatt 2760 //