ID   HE861734; SV 1; circular; genomic DNA; STD; VRL; 1573 BP.
XX
AC   HE861734;
XX
DT   19-JUN-2012 (Rel. 113, Created)
DT   19-JUN-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Cotton leaf curl Shadadpur virus defective genome, clone NCD4
XX
KW   complete genome.
XX
OS   Cotton leaf curl Shahdadpur virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1573
RA   Tahir M.N.;
RT   ;
RL   Submitted (11-JUN-2012) to the INSDC.
RL   Tahir M.N., National Institute for Biotechnology &, Genetic Engineering,
RL   Agricultural Biotec, NIBGE, Jhang Road, Faisalabad, Punjab, 38000,
RL   PAKISTAN.
XX
RN   [2]
RA   Tahir M.N., Briddon R.W., Mansoor S.;
RT   "Diversity among natural deletion mutants of cotton begomoviruses";
RL   Unpublished.
XX
DR   MD5; 1f7d9d0e4baf5c47779cfd723b6b2482.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1573
FT                   /organism="Cotton leaf curl Shahdadpur virus"
FT                   /host="Gossypium hirsutum"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Tandojam, Sindh"
FT                   /isolation_source="host leaf"
FT                   /collection_date="2007"
FT                   /clone="NCD4"
FT                   /db_xref="taxon:674996"
FT   CDS             complement(330..1418)
FT                   /gene="Rep"
FT                   /product="truncated replication associated protein"
FT                   /function="rolling circle replication initiator protein"
FT                   /db_xref="GOA:I7KAN4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I7KAN4"
FT                   /protein_id="CCI69937.1"
FT                   /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI
FT                   CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYIE
FT                   KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN
FT                   LNANLDRIFQEPLAPYISPFSSSSFDQVPEELEEWVSENVVDAAARPHRPQSIVIEGDS
FT                   RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLDRPLY
FT                   SGTNQSTAQGSEETQQEEESRS"
FT   CDS             complement(962..1264)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I7JR86"
FT                   /protein_id="CCI69938.1"
FT                   /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA
FT                   PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSQRLLESLRN"
XX
SQ   Sequence 1573 BP; 383 A; 341 C; 364 G; 485 T; 0 other;
     accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata        60
     tgacgcgctc aaagcttaaa taattctccc gcctattata agtacttcgt tgctaagtat       120
     gcgtttgaaa aatgtgggat cctgaatcgt gagtatgtcc atattcgtcg tgaatggacg       180
     gttgacgtgg ctgatgatct tgaaataaag gggatttgga acctcccaga tatgtgcgcc       240
     attccctgct tgagctgcag tgatgggttc ccctgtgcgt gaatccatgg ttgtggcagt       300
     tgattgacag ataataagaa cacccgcatt caagatctac tctcctcctc ctgttgcgtc       360
     tcttcgcttc cctgtgctgt actttgattg gtacctgagt acaggggtct atcaagtgtg       420
     atgaagatcg cattctttac tgcccagttc tttagtgcgg tgttcttttc ctcgtctagg       480
     aattctttat aactgctgtt tggaccagga ttgcagagga agattgttgg tatcccgcct       540
     ttaatttgaa ctggcttccc gtactttgtg ttggattgcc agtccctttg ggcccccatg       600
     aactctttaa agtgtttgag aaaatgcggg tcgacgtcat caatgacatt ataccaggcg       660
     tcgttactgt agaccttggg actcaggtcc agatgtccac acaaatagtt atgtggtccc       720
     aatgacctag cccacatcgt cttccccgta cgactatctc cttcaatcac tatactttga       780
     ggtctgtgtg gccgcgcagc ggcatcgaca acgttttcgg agacccactc ttcaagttct       840
     tcgggaactt gatcgaaaga agaagaagaa aaaggagaaa tatagggagc cagtggctcc       900
     tgaaagattc tgtctagatt tgcatttaaa ttatgaaatt gtagtacaaa atctttagga       960
     gctagttcct taatgactct aagagcctct gacttacttc ccgcgttaag tgctgcggcg      1020
     taagcgtcat tggctgtctg ttgccctcct cttgctgacc ttccgtcgat ctgaaattgc      1080
     ccccagtcga gaatgtcccc gtccttctcg atgtaggatt tgacgtcgga gctggattta      1140
     gctccctgta tgttcggatg gaaatgtgtt gacctgcttg gggagaccaa gtcgaagaat      1200
     cgcatattct ggcacttgaa tttcccttcg aactggatga gaacatgcaa gtgaggagtc      1260
     ccatcttcgt gaagctctct gcagattcta atatattttt ttgaagttgg ggtttgtata      1320
     tttaataatt gggaaagtgc ttcctctttg gtgagagaac atttgggata agtgatgaaa      1380
     tagtttttgg aataaatacc gttccgcttt ggaggcatgt tgactaaaat tgatcaccga      1440
     ttgaccgcac ttgcaactct ctccggtata tcggtgatca atatatagtg atcaccaaat      1500
     ggcataatgg taatacaaaa actttaattt gaaattcaaa ccaaaaggct aaagcggcca      1560
     tccgtttaat att                                                         1573
//