ID   HE861733; SV 1; circular; genomic DNA; STD; VRL; 1386 BP.
XX
AC   HE861733;
XX
DT   19-JUN-2012 (Rel. 113, Created)
DT   19-JUN-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Cotton leaf curl Shadadpur virus defective genome, clone NCD3
XX
KW   complete genome.
XX
OS   Cotton leaf curl Shahdadpur virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1386
RA   Tahir M.N.;
RT   ;
RL   Submitted (11-JUN-2012) to the INSDC.
RL   Tahir M.N., National Institute for Biotechnology &, Genetic Engineering,
RL   Agricultural Biotec, NIBGE, Jhang Road, Faisalabad, Punjab, 38000,
RL   PAKISTAN.
XX
RN   [2]
RA   Tahir M.N., Briddon R.W., Mansoor S.;
RT   "Diversity among natural deletion mutants of cotton begomoviruses";
RL   Unpublished.
XX
DR   MD5; 86b9e87f6c205d9e01a2c601d664e573.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1386
FT                   /organism="Cotton leaf curl Shahdadpur virus"
FT                   /host="Gossypium hirsutum"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Shadadpur, Sindh"
FT                   /isolation_source="host leaf"
FT                   /collection_date="2007"
FT                   /clone="NCD3"
FT                   /db_xref="taxon:674996"
FT   CDS             complement(668..1231)
FT                   /gene="Rep"
FT                   /product="truncated replication associated protein"
FT                   /function="rolling circle replication initiator protein"
FT                   /db_xref="GOA:I7IRC9"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I7IRC9"
FT                   /protein_id="CCI69935.1"
FT                   /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI
FT                   CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID
FT                   KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN
FT                   LNANLDRIFQEPLAPYISPFSSSS"
FT   CDS             complement(775..1077)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I7L1Y4"
FT                   /protein_id="CCI69936.1"
FT                   /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA
FT                   PTSNPTSTRTGTLSSGESFRSTEGQQEEGNRQPMTLTPQHLTREVSQRLLESLRS"
XX
SQ   Sequence 1386 BP; 376 A; 274 C; 329 G; 407 T; 0 other;
     accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata        60
     tgacgcgctc aaagcttaaa taattctccc gcctattata agtacttcgt tgctaagtat       120
     gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta       180
     ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat       240
     tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag       300
     cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc       360
     gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca       420
     tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat       480
     gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt       540
     cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat       600
     agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat       660
     gagaacatta agacgaagaa gaaaaaggag aaatataggg agccagtggc tcctgaaaga       720
     ttctgtctag atttgcattt aaattatgaa attgtagtac aaaatcttta ggagctagct       780
     ccttaatgac tctaagagcc tctgacttac ttcccgcgtt aagtgctgcg gcgtaagcgt       840
     cattggctgt ctgttgccct cctcttgctg accttccgtc gatctgaaac tctccccact       900
     cgagagtgtc cccgtccttg tcgatgtagg atttgacgtc ggagctggat ttagctccct       960
     gtatgttcgg atggaaatgt gctgacctgc ttggggagac caagtcgaag aatcgcatat      1020
     tctggcactt gaatttccct tcgaactgga tgagaacatg caagtgagga gtcccatctt      1080
     cgtgaagctc tctgcagatt ctaatatatt tttttgaagt tggggtttgt atatttaata      1140
     attgggaaag tgcttcctct ttggtgagag aacatttggg ataagtgatg aaatagtttt      1200
     tggaataaat accgttccgc tttggaggca tgttgactaa aattgatcac cgattgaccg      1260
     cacttgcaac tctccccggt atatcggtga tcaatatata gtgatcacca aatggcataa      1320
     tggtaataaa aaaactttaa tttgaaattc aaaccaaaag gctaaagcgg ccatccgttt      1380
     aatatt                                                                 1386
//