ID   HE861731; SV 1; circular; genomic DNA; STD; VRL; 1369 BP.
XX
AC   HE861731;
XX
DT   19-JUN-2012 (Rel. 113, Created)
DT   19-JUN-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Cotton leaf curl Burewala virus defective genome, clone NCD1
XX
KW   complete genome.
XX
OS   Cotton leaf curl Burewala virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1369
RA   Tahir M.N.;
RT   ;
RL   Submitted (11-JUN-2012) to the INSDC.
RL   Tahir M.N., National Institute for Biotechnology &, Genetic Engineering,
RL   Agricultural Biotec, NIBGE, Jhang Road, Faisalabad, Punjab, 38000,
RL   PAKISTAN.
XX
RN   [2]
RA   Tahir M.N., Briddon R.W., Mansoor S.;
RT   "Diversity among natural deletion mutants of cotton begomoviruses";
RL   Unpublished.
XX
DR   MD5; 68da3e1c3bb7d5812ce358c9ef28a708.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1369
FT                   /organism="Cotton leaf curl Burewala virus"
FT                   /host="Gossypium hirsutum"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Punjab"
FT                   /isolation_source="host leaf"
FT                   /collection_date="2006"
FT                   /clone="NCD1"
FT                   /db_xref="taxon:620894"
FT   CDS             complement(265..1206)
FT                   /gene="Rep"
FT                   /product="truncated replication associated protein"
FT                   /function="rolling circle replication initiator protein"
FT                   /db_xref="GOA:I7KAN1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I7KAN1"
FT                   /protein_id="CCI69932.1"
FT                   /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK
FT                   LCRELHEDGSHHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI
FT                   DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGTKSEALRVIKELAPKDFVLQFH
FT                   NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPITNTHYFTYML
FT                   NIMSGLKRLNLTWTFTSSRNIWTSVHPVHPGLSVHGPVRPCFCFGDADNGAAARHAYGL
FT                   PKLRRRRTFEAGVEMIISAGRFDIIPSPYYQD"
FT   CDS             complement(747..1292)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I7JR85"
FT                   /protein_id="CCI69933.1"
FT                   /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS
FT                   LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGAIISMCSSSSRANSSARITDS
FT                   STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFRSMEDQQEEDSRQPTTLT
FT                   PQHLTQALSQRLLESLRN"
XX
SQ   Sequence 1369 BP; 348 A; 275 C; 338 G; 408 T; 0 other;
     accggatggc cgcgcgattt tttttgtggg ccctaccatt atctcttgtc ggccaatcat        60
     atgacgcgct caaagcttaa ataattctcc cgcttattat aagtacttcg ttgctaagtt       120
     tgcgtttgaa aaatgtggga tccactgtta aatgagttcc ccgataccgt tcacggtttt       180
     aggtgtatgt tagcagttaa atatttgcag ttagtagaga aaacttactc tcctgataca       240
     ttgggttacg atttgataag ggatttaatc ctggtaataa gggctaggaa ttatgtcgaa       300
     gcgaccagca gatataatca tttccacgcc cgcttcgaag gtacgccgtc gtctcaactt       360
     cggcagccca tacgcgtgcc gtgctgctgc cccattgtcc gcgtcaccaa agcaaaagca       420
     tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat       480
     gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt       540
     cagcatatag gtaaagtaat gtgtgttagt gatgggccgc gcagcggcat cgacaacgtt       600
     atcgatggcc caaacttcaa gttcttctgg aacttgatcg aaagaagaag gagaaaaagg       660
     agaaatatag ggagccggtg gctcctgaaa gattctgtct agatttgcat ttaaattatg       720
     aaattgtagt acaaaatctt taggagctag ttccttaatg actctaagag cctctgactt       780
     agtgcctgcg ttaagtgctg cggcgtaagc gtcgttggct gtctgctgtc ctcctcttgc       840
     tgatcttcca tcgatctgaa actctcccca ctcgagagtg tccccgtcct tgtcgatgta       900
     ggccttgaca tctgagcttg atttagctcc ctgaatgttc ggatggaaat gtgctgacct       960
     ggttggggat accaggtcga agaatctgtt attcgtgcag acgaatttgc cctcgaactg      1020
     gatgagcaca tggagatgat ggctcccatc ttcgtgtaac tctctgcaga gtttgatgta      1080
     ttttttattc gagggtgtgt tgatggcttg aatttgggaa agtgcttcct ctttagtgag      1140
     tgagcactgt ggataagtga tgaaataatt tttggcttgt actttaaaac gtttgggggg      1200
     agccattgac tttggtcaat tagagacaac tgatgggctt ttactctggg aattggagac      1260
     tggatacaat ttatagtgtc tccaaatggc atattctgta aatagctaga agttcgtttg      1320
     aaattcaaat tctcctttgg gctccaaaag cggccatccg tataatatt                  1369
//