ID HE819245; SV 1; circular; genomic DNA; STD; VRL; 2774 BP. XX AC HE819245; XX DT 07-JAN-2013 (Rel. 115, Created) DT 07-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow leaf curl virus complete genome, isolate T-38 XX KW complete genome. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2774 RA Akhtar S.; RT ; RL Submitted (19-MAY-2012) to the INSDC. RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN. XX RN [2] RA Khan A.J., Al-Matroushi A.R.M.O., Akhtar S.; RT "Diversity of begomoviruses on field crops in Oman"; RL Unpublished. XX DR MD5; 3596c71758f014c7768adf335800d3f5. XX FH Key Location/Qualifiers FH FT source 1..2774 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="T-38" FT /mol_type="genomic DNA" FT /country="Oman" FT /isolation_source="leaf" FT /collection_date="2011" FT /db_xref="taxon:10832" FT CDS 148..498 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B4YT03" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B4YT03" FT /protein_id="CCH75848.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPLQQPCCCPHCPRHKQAPIMDVQAHV FT PKAQNIQNVSKP" FT CDS 308..1084 FT /gene="V1" FT /gene_synonym="CP" FT /product="coat protein" FT /db_xref="GOA:L0P1U2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0P1U2" FT /protein_id="CCH75849.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKYTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="GOA:L0P332" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0P332" FT /protein_id="CCH75850.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN FT VIRAVDHVLYDVLANTINVTESHDIKYKFY" FT CDS complement(1226..1633) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:L0P141" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0P141" FT /protein_id="CCH75851.1" FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTRPVRRKRIDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ FT HKEGTGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1557..2621) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="GOA:L0P1G1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0P1G1" FT /protein_id="CCH75852.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLFKIQIPTSKEGLR FT ICRELQDEGTPHLHVLILFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNIIDDVNPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKDYLDEEKNTSLKNWALKNATFVTLYEPL FT FSSANQNPTPHSED" FT CDS complement(2171..2446) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0P148" FT /protein_id="CCH75853.1" FT /translation="MFSSYSKESSSARTIDSSTSPPQPGQHISIRTFRELKAQAMSKPT FT WRKTETSLIMEFSRSMEDQLEEVANLQTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2774 BP; 739 A; 541 C; 631 G; 863 T; 0 other; accggatggc cgcgcgattt ttttgtggtc cccgccacac gtgggttcca cagacgtcgc 60 tatcaaccaa tcaaattgca tcctcaaacg ttagataagt gtacatttgt ccttataaac 120 ttggtcccca agtttgttgt ttgcaatatg tgggatccac ttcttaatga atttcctgaa 180 tccgttcacg gatttcgttg tatgttagct attaaatatt tgcaggccgt tgaggaaacg 240 tatgagccca acactttggg ccacgattta attagggatc ttatatctgt tgtaagggct 300 cgtgactatg tcgaagcgac ccggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccctacag cagccgtgct gctgccccca ttgtccaagg 420 cataaacaag cgccgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agtatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatccgga attacccaca gagtgggtaa gaggttctgt gttaaatcca tatatttttt 660 aggtaaagtt tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtc cgtgatagaa ggccctatgg aagcagccca atggattttg ggcaggtttt 780 taatatgttc gataatgagc ctagtaccgc aaccgtgaag aatgatctcc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tatcggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa tagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaatcata ctgagaatgc tttgttgttg tatatggcat gtactcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgact ttcggttaca tttattgtgt ttgcaagtac 1140 atcatataat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagatt 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccagta ccttccttat 1320 gttgtgattg aatcttatct gtattgaaat gatgtcgtgg ctcattagaa atggcctctc 1380 gtcgtggttg gtgatcttga aatacagggg attttctatc tcccatataa aaacgccatt 1440 ctgggcttga tgagcagtga tgagttcccc ggtgcgtgaa tccatgattg atgcagttga 1500 tgtggaggta atatgagcat ccgcagtcga ggtctatgcg cttacgtctg actggcctag 1560 tcttcgctat gcggtgttgg attttgattg gcacttgaga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattc tttaaggatg tgtttttttc ctcgtctaga 1680 tagtccttat atgatgaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattctttga agtgctttaa ataatgcggg tttacgtcat caatgatgtt gtaccacgca 1860 tcattactgt atacctttgg acttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcgatgac aatactatta 1980 ggtctccatg gccgcgcagc ggaagacatg acgttctctg acacccatac ttcaagttcc 2040 tctggaactt gattaaaaga agaagataaa aatggagaaa tataaggagc cggaggctcc 2100 tgaaaaatcc tatctaaatt actatttaaa ttatgaaatt ggagtagaaa gtctcttggg 2160 gctttctcct tcagtatatt gagggcctga gctttggacc ctgcgttgat tgcctcggca 2220 tatgcgtcgt ttgcagattg gcaacctcct ctagctgatc ttccatcgac ctggaaaact 2280 ccatgatcaa ggatgtctcc gtctttctcc atgtaggttt tgacatcgct tgagctttta 2340 gctccctgaa tgttcggatg gaaatgtgct gacctggttg gggaggtgag gtcgaagaat 2400 ctattgttct tgcactggaa ctttccttcg aataggatga gaacatgcaa gtgaggagtc 2460 ccctcatctt gaagctctct gcagattcta agcccttcct tggaagtggg aatttggatt 2520 ttaaataatt gggaaagtgc ttcctcttta gtaagagagc acttgggata agtgagaaaa 2580 taatttttgg catttatttt aaaccgattg ggggctgcca tgctgactta gtcaatcggt 2640 gtctctcaat ttgctctatg tatcggtgta ctggagtcct atatatatgg agactccaat 2700 ggcataattg taataaaaga actttaattt gaatttcaaa tgaaaaagca taaagcggcc 2760 atccgtctaa tatt 2774 //