ID HE819244; SV 1; circular; genomic DNA; STD; VRL; 2772 BP. XX AC HE819244; XX DT 07-JAN-2013 (Rel. 115, Created) DT 08-NOV-2014 (Rel. 122, Last updated, Version 2) XX DE Tomato leaf curl Sudan virus complete genome, virus isolate Manah77 XX KW complete genome. XX OS Tomato leaf curl Sudan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2772 RA Akhtar S.; RT ; RL Submitted (19-MAY-2012) to the INSDC. RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN. XX RN [2] RX DOI; .1094/PDIS-02-13-0210-RE. RX PUBMED; 30708466. RA Khan A.J., Akhtar S., Singh A.K., Briddon R.W.; RT "A Distinct Strain of Tomato leaf curl Sudan virus Causes Tomato Leaf Curl RT Disease in Oman"; RL Plant Dis. 97(11):1396-1402(2013). XX DR MD5; d750c02a6498ec88d30968108de70107. XX FH Key Location/Qualifiers FH FT source 1..2772 FT /organism="Tomato leaf curl Sudan virus" FT /host="Solanum lycopersicum" FT /isolate="Manah" FT /mol_type="genomic DNA" FT /country="Oman:Manah" FT /isolation_source="leaf" FT /collection_date="2011" FT /clone="T-34" FT /db_xref="taxon:270146" FT CDS 136..486 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DF13" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DF13" FT /protein_id="CCH75842.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASIMDVQAHV FT PKAQNIQNVSNS" FT CDS 296..1030 FT /gene="V1" FT /gene_synonym="CP" FT /product="coat protein" FT /db_xref="GOA:L0P144" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0P144" FT /protein_id="CCH75843.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRTPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYEN FT HTENALLLYMACTHASNPVYVH" FT CDS complement(1126..1470) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="GOA:L0P1U0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0P1U0" FT /protein_id="CCH75844.1" FT /translation="MDSRTGELITAHQATNGVFIWEINNPLYFKITSHNERPLNMNKDI FT ISIQIRFNHNIRKELGIHKCFLNFRIWTTLRPQTGHFLRVFKYQVLRYLDNIGVISINN FT VIRAVDHVFV" FT CDS complement(1211..1618) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:L0P327" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0P327" FT /protein_id="CCH75845.1" FT /translation="MQPSSPSTSHCSQVPIKVQHKQAKKKIIRRRRLDLDCGCSYYLHI FT NCTNHGFTHRGTHHCSSGNEWRFYLGDKQSPLFQDHQPQREATQHEQRHNFNTNPIQSQ FT HQEGVGDSQMFSQLPNLDDLTASDWSFLKSI" FT CDS complement(1527..2663) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="GOA:L0P138" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0P138" FT /protein_id="CCH75846.1" FT /translation="MHRLQDTNEISGQSVLIDQMAPPKSFKIYCKNYFLTYPHCSLSLP FT EALSQLQNLQTPVNKLYIKICRELDENGETHLHVLMQFEGKYQCTNNRFFDMVSTTRSA FT HFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDAYAQALNTGSKS FT EALNVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSEN FT VMPSAARPWRPNSIVIEGDSRTGKTMWARSLAPHNYLCGHLDLSPKVYSNDAWYNVIDD FT VDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPASSYREYLDEEKNI FT SLKNWALKNATFITLYEPLFSSANQGPTQASQEENNQA" FT CDS complement(2159..2449) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0P1F8" FT /protein_id="CCH75847.1" FT /translation="MGKHISMCLCNSKESTSAQITDSSTWSPQPGQHISIQTFRELNPA FT LTSSPILTRTETPSNGVSFRSMEDLQEGDNNQPMMLTPKRLTLEVSRRLLM" XX SQ Sequence 2772 BP; 729 A; 544 C; 616 G; 883 T; 0 other; accggatggc cgcgccccgc ttttttggtg ggccccaccc atgtcgctat caaccaatca 60 aaatttagcc tggaacgtta gataactgtc ctttcgtctt tatatacttg gtccccaagt 120 tgtttgtctt ccaaaatgtg ggaccctctt ttgaatgaat ttccggagtc tgttcacgga 180 tttcgttgta tgctagccat aaaatatttg caggccgttg agcaaacata cgagcccaat 240 actttgggcc acgatttaat tagggatctt atttctgtta taagggcccg tgactatgtc 300 gaagcgtccc ggcgatataa tcatttccac gcccgtctcg aaggttcgcc gaaggctgaa 360 cttcgacagc ccatacagca gccgtgctgc tgcccccatt gtccaaggca caaacaagcg 420 tcgatcatgg acgtacaggc ccatgtaccg aaagcccaga atatacagaa tgtatcgaac 480 tcctgatgtt cctcgtggat gtgaaggccc atgtaaggtc caatcgtttg acaagcgcca 540 tgatttgaag catacgggtg aggtattgtg tgtttcagat gtaacacgtg gtaatggcct 600 tactcatcgt gttgggaaac gtttttgtat caagtctatt tacattgttg gcaaagtgtg 660 gatggatgag aacattaagg tgaagaatca tactaacact tgtatgttct ggcttgttcg 720 ggatcgtcgt ccagttacta cgccttatgg atttggagaa ttgtttaaca tgtatgataa 780 tgagccatct actgccacta ttaagaatga tctgcgggat cgttgtcagg ttcttaagag 840 gtttactgct agcctgagtg gtggtcaata tgcgtccaaa gagcaatgtg tcattaggcg 900 attttataag atttataacc atattgttta taatcatcaa gagcagggga aatatgagaa 960 tcatactgag aacgctctat tattgtatat ggcatgtact catgcttcta atccagtgta 1020 tgtacactga aaataagggt gtacttctac gattcaatat cgaattaata aaatttatat 1080 tttatatcat gatgttctgt tacatctgtt gtctttgcaa ttacattata caaatacatg 1140 atcaactgct ctaattacat tgttaatgga aattacacca atattatcta aatatctaag 1200 aacttgatat ttaaatactc ttaagaaatg accagtctga ggccgtaagg tcgtccagat 1260 tcggaagttg agaaaacatt tgtgaatccc caactccttc ctgatgttgt gattgaatcg 1320 gatttgtatt gaaattatgt ctttgttcat gttgagtggc ctctcgttgt ggctggtgat 1380 cttgaaatag aggggattgt ttatctccca gataaaaacg ccattcgttg cctgatgagc 1440 agtgatgagt tcccctgtgc gtgaatccat ggttggtgca gttgatatgg agatagtatg 1500 agcagccgca gtctaggtcc agtcgcctac gcctgattat tttcttcttg gcttgcttgt 1560 gttggacctt gattggcact tgagaacagt ggctcgtaga gggtgatgaa ggttgcattc 1620 ttgagagccc aatttttcag agatatattt ttttcttcgt ctagatattc tctataagag 1680 gaggctggtc ctggattgca taggaagata gtgggaattc cgcctttaat ttgaatgggc 1740 ttcccgtact ttgtgttgct ttgccagtcc ctctgggccc ccatgaattc tttaaagtgc 1800 tttaaataat gcgggtctac gtcatcaatg acattgtacc acgcatcatt actgtacacc 1860 tttggactca ggtctagatg tccacacaaa taattatgtg gggctagaga cctggcccac 1920 attgttttgc cggtcctgct atcaccctct atgacaatac tgttaggtct ccatggccgc 1980 gcagcggaag gcatgacgtt ctcggacacc cagacttcaa gttcctcagg aacttgatta 2040 aaagaagaag ataaaaaagg agaaatataa ggagccggtg gctcctgaaa aatcctatct 2100 aaattactat ttaaattatg aaattgcaaa acaaaatctt taggagctaa ttctttaatt 2160 acattaagag cctccgactt acttccagtg ttaagcgctt gggcgtaagc atcattggct 2220 gattgttgtc cccctcttgc agatcttcca tcgatctgaa actcacccca ttcgatggtg 2280 tctccgtcct tgtcaatata ggacttgacg tcagagctgg atttagctcc ctgaatgttt 2340 ggatggaaat gtgctgacct ggttgtggag accatgtcga agaatctgtt atttgtgcac 2400 tggtactttc cttcgaattg cataagcaca tggagatgtg tttccccatt ctcgtctagc 2460 tctctgcaga ttttgatgta taacttgttt actggggttt gtaggttttg taattgggaa 2520 agtgcttctg gtaaagaaag agagcaatgt ggatatgtga gaaaataatt tttgcaatat 2580 attttgaaac tcttaggagg agccatttgg tcaatgagta ccgattgacc agagatttca 2640 tttgtgtcct gcaatcggtg catgggtaca atatataggt gtaccccaaa tggcattctt 2700 gtaatttggg attgtctttt gaattttaaa attcaaaatt caatttccca aatcggccat 2760 ccgtataata tt 2772 //