ID HE819243; SV 1; circular; genomic DNA; STD; VRL; 2779 BP. XX AC HE819243; XX DT 07-JAN-2013 (Rel. 115, Created) DT 07-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow leaf curl virus complete genome, virus isolate BidBid XX KW complete genome. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2779 RA Akhtar S.; RT ; RL Submitted (19-MAY-2012) to the INSDC. RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN. XX RN [2] RA Khan A.J., Al-Matroushi A.R.M.O., Akhtar S.; RT "Diversity of begomoviruses on field crops in Oman"; RL Unpublished. XX DR MD5; 7db61896050d2279188e6c36e427637b. XX FH Key Location/Qualifiers FH FT source 1..2779 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="BidBid" FT /mol_type="genomic DNA" FT /country="Oman:Bid Bid" FT /isolation_source="leaf" FT /collection_date="2011" FT /clone="T-33" FT /db_xref="taxon:10832" FT CDS 135..485 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:L0P134" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0P134" FT /protein_id="CCH75836.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT CDS 295..1071 FT /gene="V1" FT /gene_synonym="CP" FT /product="coat protein" FT /db_xref="GOA:L0P1F3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0P1F3" FT /protein_id="CCH75837.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSVSN" FT CDS complement(1068..1472) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="GOA:L0P142" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0P142" FT /protein_id="CCH75838.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTESHDIKYKFY" FT CDS complement(1213..1620) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:L0P1T7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0P1T7" FT /protein_id="CCH75839.1" FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKAVRRKRIDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFHSDKIQSQ FT YQEGTGDSQMFSQLPDLDDITASDWSFLKSI" FT CDS complement(1535..2611) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="GOA:L0P324" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0P324" FT /protein_id="CCH75840.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTFQKISL FT EFCRSFTKDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTY FT MEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQF FT HNLSSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEG FT DSRTGKTMWARSLGTHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEP FT LFSSANQNPTPHSENEGS" FT CDS complement(2158..2451) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0P136" FT /protein_id="CCH75841.1" FT /translation="MGLLTCMFSSNSRGSSSARTIDSSTSPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2779 BP; 749 A; 545 C; 631 G; 854 T; 0 other; accggatggc cgcgcccctc tttttcgtgg gtcccacaca tgtcactgtc aaccaatcaa 60 attttagcct ggaacgttag ataactgtcc tgttgtcttt atatacttgg tccccaagta 120 gtttgttttc caaaatgtgg gaccctcttc tgaatgaatt tccggaatct gttcacggat 180 ttcgttgtat gctagccata aaatatttgc aggccgttga gcaaacatac gagcccaata 240 ctttgggcca cgatttaatt agggatctta tttctgttat aagggcccgt gattatgtcg 300 aagcgtcccg gcgatataat catttccacg cccgtctcga aggttcgccg aaggctgaac 360 ttcgacagcc catacagcag ccgtgctgct gcccccattg tccaaggcac aaacaagcga 420 cgatcatgga cgtacaggcc catgtaccgg aagcccagaa tatacagaat gtatcgaagc 480 cctgatgttc ctcgtggatg tgaaggccca tgtaaagtcc agtcttatga gcaacgggat 540 gatgttaagc atactggtat tgttcgttgt gttagtgatg ttactcgtgg atctggaatt 600 actcacagag tgggtaagag gttctgtgtt aaatcgatat attttttagg taaagtctgg 660 atggatgaaa atatcaagaa gcagaatcac actaatcagg tcatgttctt cttggtccgt 720 gatagaaggc cctatggaag cagcccaatg gattttggac aggtttttaa tatgtttgat 780 aatgagccca gtaccgcaac cgtgaagaat gatttgcggg ataggtttca agtgatgagg 840 aaatttcatg ctacagttat tggtgggccc tccggaatga aggaacaggc attagttaag 900 agatttttta gaattaacag tcatgtaact tataatcatc aggaggcagc caagtacgag 960 aaccatactg aaaacgcctt gttattgtat atggcatgta ctcatgcttc taatccagtg 1020 tatgcaacta tgaaaatacg catctatttc tatgattcag tatcaaatta ataaaattta 1080 tattttatat catgactttc tgttacattt attgtgtttt caagtacatc atacaataca 1140 tgatcaactg ctctgattac attgttaatg gaaattacac caagactatc taaatattta 1200 agaacttgat atctaaatac tcttaagaaa cgaccagtct gaggctgtaa tgtcgtccaa 1260 atccggaagt tgagaaaaca tttgtgaatc cccagtacct tcctgatatt gtgattgaat 1320 cttatctgaa tggaaatgat gtcgtggttc attagaaatg gcctctcgtc gtggttggtg 1380 atcttgaaat acaggggatt ttctatctcc catataaaaa cgccattctg ggcttgatga 1440 gcagtgatga gttccccggt gcgtgaatcc atgattgatg cagttgatgt ggaggtaata 1500 tgagcatccg cagtcgaggt ctatgcgctt acgtctaact gccttcgttt tcgctatgcg 1560 gtgttggatt ttgattggca cttgagaaca gtggctcgta gagggtgacg aaggttgcat 1620 tcttgagagc ccaatttttc aaggatatgt ttttctcttc gtctagatat tccctatatg 1680 aggaggtagg tcctggattg cagaggaata tagtgggaat acccccttta atttgaatgg 1740 gtttcccgta ctttgtgttg ctttgccagt ccctctgggc ccccatgaat tccttgaagt 1800 gctttaaata atgcgggtct acgtcatcaa tgacgttgta ccacgcatca ttactgtaca 1860 cctttggact taggtctaaa tggccacaca aataattatg tgtgcctaga gacctggccc 1920 acattgtttt gccggtcctg ctatcaccct cgatgataat actattaggt ctccatggcc 1980 gcgcagcgga agacatgacg ttctcggaca cccagacttc aagttcctct ggaacttggt 2040 taaaagaaga agataaaaaa ggagaaatat aaggagccgg aggctcctga aaaatcctat 2100 ctaaattact acttaaatta tgaaattgga gtagaaagtc tcttggggct ttctccttca 2160 gtatattgag ggcctgagct ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcttc catcgacctg gaaaactcca tgatcaagga 2280 tgtctccgtc tttctccatg taggttttga catcgcttga gcttttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg aggtgaggtc gaagaatcta ttgttcttgc 2400 actggaactt cccctcgaat tggatgagaa catgcaagtg aggagtccca tctttcgtga 2460 agctcctgca gaattctaat gaaatttttt ggaaagtggg tgtttggaga tttaataatt 2520 gggaaagtgc ttcctcttta gtaagagagc acttgggata agtgagaaaa taatttttgg 2580 catttatttt aaaccgattg ggggctgcca tgctgactaa gtcaatcggt gtctctcaat 2640 ttgctctatg tatcggtgta ctggagtcct atatatatgg agactctaat ggcattttgg 2700 gaatttggta aaagtacatt gcaattcaaa attcaaaatt caaaaatcaa attattaaag 2760 cggccatccg tataatatt 2779 //