Dbfetch
ID HE819242; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HE819242; XX DT 07-JAN-2013 (Rel. 115, Created) DT 07-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow leaf curl virus complete genome, isolate NZ-74 XX KW complete genome. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Akhtar S.; RT ; RL Submitted (19-MAY-2012) to the INSDC. RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN. XX RN [2] RA Khan A.J., Al-Matroushi A.R.M.O., Akhtar S.; RT "Diversity of begomoviruses on field crops in Oman"; RL Unpublished. XX DR MD5; 54edacc0ea8c541c8189193683aa1cd9. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="NZ-74" FT /mol_type="genomic DNA" FT /country="Oman:Nizwa" FT /isolation_source="leaf" FT /collection_date="2011" FT /clone="T-30" FT /db_xref="taxon:10832" FT CDS 129..479 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:K0DDV6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K0DDV6" FT /protein_id="CCH75830.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPLQQPCCCPHCPRHKQASIMDVQAHV FT PKAQNIQNVSKP" FT CDS 289..1065 FT /gene="V1" FT /gene_synonym="CP" FT /product="coat protein" FT /db_xref="GOA:L0P132" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0P132" FT /protein_id="CCH75831.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEGAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1062..1466) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="GOA:L0P1F0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0P1F0" FT /protein_id="CCH75832.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKVLGIHKCYLNFQIWTTLRPQTGRFLRVFRYQVLKYLDNLGVISINN FT VIRAVDHVLYNVLENTINVTESHDIKYKFY" FT CDS complement(1207..1614) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:H2DGS7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DGS7" FT /protein_id="CCH75833.1" FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKPVRRKRIDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ FT HQEGTGDSQMLSQLPNLDDLTASDWSFLKSI" FT CDS complement(1538..2602) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="GOA:L0P1T3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0P1T3" FT /protein_id="CCH75834.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIR FT ICRELHENGIPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKTQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYVSPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FSSANQNPTPHSED" FT CDS complement(2152..2445) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0P321" FT /protein_id="CCH75835.1" FT /translation="MGFLTCMFSSNSKESSSARTIDSSTSLPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2763 BP; 745 A; 532 C; 625 G; 861 T; 0 other; accggatggc cgcgctctac atgggtccca cacacgtcgc tatcatccaa ccaaattgat 60 gactgaaacg ttagataatt gtttatttgt ccttataaac ttagtcccca agtttgttgt 120 cttgcaatat gtgggatcca cttcttaatg aatttcctga atccgttcac ggatttcgtt 180 gtatgttagc tattaaatat ttgcaggccg ttgaggaaac gtatgagccc aacactttgg 240 gccacgattt aattagggat cttatatctg ttgtaagggc tcgtgactat gtcgaagcga 300 cccggcgata taatcatttc cacgcccgtc tcgaaggttc gccgaaggct gaacttcgac 360 agcccctaca gcagccgtgc tgctgccccc attgtccaag gcataaacaa gcgtcgatca 420 tggacgtaca ggcccatgta ccgaaagccc agaatataca gaatgtatcg aagccctgat 480 gttccccgtg gatgtgaagg cccatgtaaa gtccagtctt atgagcaacg ggatgatatt 540 aagcatactg gtattgttcg ttgtgttagt gatgttactc gtggatctgg aattacccac 600 agagtgggta agaggttctg tgttaaatcg atatattttt taggtaaagt ctggatggat 660 gaaaatatca agaagcagaa tcacactaat caggtcatgt tcttcttggt tcgtgataga 720 aggccctatg gaagcagccc aatggatttt ggtcaggttt ttaatatgtt cgataatgag 780 cccagtaccg caaccgtgaa gaatgacctc cgggataggt ttcaagtgat gaggaaattt 840 catgctaccg ttattggtgg gccctctgga atgaaggaac aggctttagt taagagattt 900 tttagaatta acagtcatgt aacttataat catcaagaag gagccaagta cgagaatcat 960 actgaaaacg ccttgttgtt gtatatggca tgtacacatg cctctaaccc agtgtatgca 1020 actatgaaaa tacgcatcta tttctatgat tcaatatcaa attaataaaa tttatatttt 1080 atatcatgac tttcggttac atttattgtg ttttcaagta cattatacaa tacatgatca 1140 actgctctaa ttacattgtt tatggaaatt acacctaaat tatctaaata tttaagaact 1200 tgatatctaa atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagatttgg 1260 aagttgagat aacatttgtg aatccccagt accttcctga tgttgtgatt gaatcttatc 1320 tgtattgaaa tgatgtcgtg gctcattaga aatggcctct cgtcgtggtt ggtgatcttg 1380 aaatacaggg gattttctat ctcccatata aaaacgccat tctgggcttg atgagcagtg 1440 atgagttccc cggtgcgtga atccatgatt gatgcagttg atgtggaggt agtatgagca 1500 tccgcagtcg aggtctatgc gcttacgtct gactggctta gtcttcgcta tgcggtgttg 1560 gattttgatt ggcacttgag aacagtggct cgtagagggt gacgaaggtt gcattcttga 1620 gagcccaatt ttttaaggat atgttttttt cttcgtctag atattcccta tatgacgagg 1680 taggtcctgg attgcagagg aagatagtgg gaattccccc tttaatttga atgggtttcc 1740 cgtactttgt gttgctttgc cagtccctct gggcccccat gaattctttg aagtgcttta 1800 aataatgcgg gtctacgtca tcaatgacgt tgtaccacgc atcattactg tatacctttg 1860 gacttaggtc tagatgtcca cacaaataat tatgtgggcc tagagacctg gcccacattg 1920 ttttgccggt tctgctatca ccctcgatga caatactatt aggtctccat ggccgcgcag 1980 cggaagacat gacgttctcc gacacccata cttcaagttc atctggaact tgattaaaag 2040 aagaagataa aaagggagaa acataaggag ccggaggctc ctgaaaatac ctatctaaat 2100 tactatttaa attatgaaat tggagtagaa agtctcttgg ggctttctcc ttcagtatat 2160 tgagggcctg agttttggac cctgcgttga ttgcctcggc atatgcgtcg ttggcagatt 2220 ggcaacctcc tctagctgat cttccatcga cctggaaaac tccatgatca aggatgtctc 2280 cgtctttctc catgtaggtt ttgacatcgc ttgagctttt agctccctga atgttcggat 2340 ggaaatgtgc tgacctggtt ggggaagtga ggtcgaagaa tctattgttc ttgcactgga 2400 actttccttc gaattggatg agaacatgca agtgaggaat cccattttcg tgaagctctc 2460 tgcagattct aatgaatttt ttggaagtgg gtgtttggag atttaataat tgggaaagag 2520 cttcctcttt agtaagagag cacttgggat aagtgagaaa ataatttttg gcatttattt 2580 taaaccgatt gggggctgcc atgctgactt agtcaatcgg tgtctctcaa tttgctctat 2640 gtatcggtgt actggagtcc tatatatatg gagactctaa tggcatattg gtaatttcgt 2700 aaaagcattt ttaaaagtaa aattcaaaaa tcaaaatcat aaagcggcca tccgtataat 2760 att 2763 //