ID HE819241; SV 1; circular; genomic DNA; STD; VRL; 2766 BP. XX AC HE819241; XX DT 07-JAN-2013 (Rel. 115, Created) DT 07-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow leaf curl virus complete genome, virus isolate Bidiya XX KW complete genome. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2766 RA Akhtar S.; RT ; RL Submitted (19-MAY-2012) to the INSDC. RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN. XX RN [2] RA Khan A.J., Al-Matroushi A.R.M.O., Akhtar S.; RT "Diversity of begomoviruses on field crops in Oman"; RL Unpublished. XX DR MD5; 30078a6f4fe50113b8eb5865dc0858cd. XX FH Key Location/Qualifiers FH FT source 1..2766 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="Bidiya" FT /mol_type="genomic DNA" FT /country="Oman:Bidiya" FT /isolation_source="leaf" FT /collection_date="2011" FT /clone="T-29" FT /db_xref="taxon:10832" FT CDS 141..491 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:L0P1S6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0P1S6" FT /protein_id="CCH75824.1" FT /translation="MWDPLLNEFPDSVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHACLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT SKAQNVQNVSKP" FT CDS 301..1077 FT /gene="V1" FT /gene_synonym="CP" FT /product="coat protein" FT /db_xref="GOA:L0P313" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0P313" FT /protein_id="CCH75825.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRHMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1074..1478) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="GOA:L0P130" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0P130" FT /protein_id="CCH75826.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKILGIHKCYLNFQIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTESHDIKYKFY" FT CDS complement(1219..1626) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:L0P1E8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0P1E8" FT /protein_id="CCH75827.1" FT /translation="MQPSSPSTSHCSQVPIKVQHRIAKTKPIRRKRVDLDCGCSYYLHL FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPLFQDHQPRREAISNEPRHHFNTDKIQSQ FT HQEDTGDSQMLSQLPNLDDLTASDWSFLKSI" FT CDS complement(1550..2614) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="GOA:L0P139" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0P139" FT /protein_id="CCH75828.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALFQLLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYVSPFLSSSFNQVPDELEEWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYMEYLDEEKNISFKNWALKNATFVTLHEPL FT FASANQGPTPHSED" FT CDS complement(2164..2457) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0P1T0" FT /protein_id="CCH75829.1" FT /translation="MGLLTCMFSSNSKENSSARTIDSSTSPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSRSMEDQLEEVVNLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2766 BP; 743 A; 536 C; 632 G; 855 T; 0 other; accggatggc cgcgattttt tttggcccca cagcgcacta actgacaaag atatctgcac 60 caatgaaaag agctcctcaa agcttaattg ttttgtggtc ccctatttaa acttcgccac 120 caagtagttt gtattgcata atgtgggatc cacttctaaa tgagtttcct gactccgttc 180 acggatttcg ttgtatgtta gctattaaat atttgcagtc cgttgaggaa acttacgagc 240 ccaatacatt gggccacgat ttaattaggg atcttatatc tgttgtaagg gcccgtgact 300 atgtcgaagc gaccaggcga tataatcatt tccacgcctg tctcgaaggt tcgccgaagg 360 ctgaacttcg acagcccata cagcagccgt gctgctgtcc ccattgtcca aggcacaaac 420 aagcgacgat catggacgta caggcacatg tatcgaaagc ccagaatgta cagaatgtat 480 cgaagccctg atgttccccg tggatgtgaa ggcccgtgta aagtccagtc ttatgagcaa 540 cgggatgata ttaagcatac tggtattgtt cgttgtgtta gtgatgttac tcgtggatct 600 gggattaccc acagagtggg taagaggttc tgtgttaaat cgatatattt tttaggtaaa 660 gtctggatgg atgaaaatat caagaagcag aatcacacta atcaggtcat gttctttttg 720 gtccgtgata gaaggcccta tggaagcagc ccaatggatt ttggacaggt ttttaatatg 780 ttcgataatg agcccagtac cgcaaccgtg aagaatgatt tgcgggatag gtttcaagtg 840 atgaggaaat ttcatgctac agttattggt gggccctctg gaatgaagga acaggcatta 900 gttaagagat tttttagaat taacagtcat gtaacttata atcatcagga ggcagccaag 960 tacgagaacc atactgaaaa cgccttgtta ttgtatatgg catgtacgca tgcctctaat 1020 ccagtgtatg caactatgaa aatacgcatc tatttctatg attcaatatc aaattaataa 1080 aatttatatt ttatatcatg actttctgtt acatttattg tgttttcaag tacatcatat 1140 aatacatgat caactgctct gattacattg ttaatggaaa ttacaccaag actatctaaa 1200 tacttaagaa cttgatatct aaatactctt aagaaacgac cagtctgagg ccgtaaggtc 1260 gtccagattt ggaagttgag ataacatttg tgaatcccca gtatcttcct gatgttgtga 1320 ttgaatctta tctgtattga aatgatgtcg tggctcatta gaaatggcct ctcgtcgtgg 1380 ttggtgatct tgaaatagag gggattttct atctcccata taaaaacgcc attctgggct 1440 tgatgagcag tgatgagttc ccctgtgcgt gaatccatga ttgatgcagt tgaggtggag 1500 gtagtatgag catccacagt ctaggtctac acgcttacgt cttattggct tagtcttcgc 1560 tatgcggtgt tggaccttga ttggcacttg cgaacagtgg ctcgtggagg gtgacgaagg 1620 ttgcattctt gagagcccaa tttttaaagg atatgttttt ttcttcgtct agatattcca 1680 tatatgagga ggtaggtcct ggattgcaga ggaagatagt gggaattccc cctttaattt 1740 gaatgggttt cccgtacttt gtgttgcttt gccagtccct ctgggccccc atgaattcct 1800 tgaagtgctt taaataatgc gggtctacgt catcgatgac gttgtaccac gcatcattac 1860 tgtacacctt tggacttagg tctagatgtc cacataaata attatgtggg cctagagacc 1920 tggcccacat tgtcttcccc gttctgctat caccctcgat gacaatacta ttaggtctcc 1980 atggccgcgc agcggaagac atgacgttct ccgacaccca ttcctcaagt tcatctggaa 2040 cttgattaaa agatgaagat aaaaagggag aaacataagg agccggaggc tcctgaaaat 2100 acctatctaa attactattt agattatgaa attggagtag aaagtctctt ggggctttct 2160 ccttcagtat attgagggcc tgagctttgg accctgcgtt gattgcctcg gcatatgcgt 2220 cgttggcaga ttgacaacct cctctagctg atcttccatc gacctggaaa actccatgat 2280 caaggatgtc tccgtctttc tccatgtagg ttttgacatc gcttgagctt ttagctccct 2340 gaatgttcgg atggaaatgt gctgacctgg ttggggaggt gaggtcgaag aatctattgt 2400 tcttgcactg gaattttcct tcgaattgga tgagaacatg caagtgagga gtcccatctt 2460 cgtgaagctc tctgcagatt ctaatgaatt ttttggaagt gggtgtttgg agatttaata 2520 attggaaaag tgcttcctct ttagtaagag agcacttggg ataagtgaga aaataatttt 2580 tggcatttat tttaaaccga ttgggggctg ccatgctgac ttagtcaatc ggtgtctctc 2640 aatttgctct atgtatcggt gtactggagt cctatatata tggagactct aatggcataa 2700 ttgtaataaa agaactttaa tttgaatttc aaatgaaaag cctaaagcgg ccatccgtct 2760 aatatt 2766 //