ID HE819238; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC HE819238; XX DT 07-JAN-2013 (Rel. 115, Created) DT 07-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Chilli leaf curl virus complete genome, isolate TOS-93 XX KW complete genome. XX OS Chilli leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Akhtar S.; RT ; RL Submitted (19-MAY-2012) to the INSDC. RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN. XX RN [2] RA Khan A.J., Al-Zaidi A.M., Akhtar S.; RT "Molecular characterization and infectivity analysis of Chilli leaf curl RT virus from Oman."; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Chilli leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="TOS-93" FT /mol_type="genomic DNA" FT /country="Oman:SQU, Muscat" FT /isolation_source="leaf" FT /collection_date="2011" FT /db_xref="taxon:172278" FT CDS 149..514 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DGX7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGX7" FT /protein_id="CCH75806.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES FT EAQDVQDVQKPRCSEGM" FT CDS 309..1079 FT /gene="V1" FT /gene_synonym="CP" FT /product="coat protein" FT /db_xref="GOA:H2DH02" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DH02" FT /protein_id="CCH75807.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1076..1480) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="UniProtKB/TrEMBL:L0P131" FT /protein_id="CCH75808.1" FT /translation="MDSRTGEPITAAQPENGVFIREIPNPLYFKIPEHHTRPFLKSQDI FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY" FT CDS complement(1221..1625) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="UniProtKB/TrEMBL:L0P1R8" FT /protein_id="CCH75809.1" FT /translation="MRPSSPSQAHSTHVPIKVQHRLAKNGTRRRRVDLDCGCSYFIALR FT FHSYGFTHRGTHHCSSTREWRVYSGDTKSPVFQDTRAPHQAIPEKPGHHHSADTVQSQL FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT CDS complement(1528..2613) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="UniProtKB/TrEMBL:L0P303" FT /protein_id="CCH75810.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGTHNYLCGHFDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSHTKYGEPVQIRGGIPAIFLCNPRPDSSYEQFLDEEKNSALKHWALKNATFITLTGPL FT YSRSNQSAAQAGQEWDQASSR" FT CDS complement(2163..2456) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGV3" FT /protein_id="CCH75811.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2758 BP; 763 A; 555 C; 639 G; 801 T; 0 other; accggatggc cgcgattttt tttaccgtgg accccgcgat gcacgtgctg acaaatacat 60 gtggaccaat taaaaacgtc cctcaaagct taattgtttc gtggtcccct ctataaactt 120 gggcccgaag tagtgggttt ttatcacaat gtgggatcct ttactaaatg agtttcccga 180 aagtgttcat gggtttaggt gtatgttagc agtgaaatat ctgcaattag tagaaaattc 240 atattcgcca gacacattag ggtacgattt aatcagggat ttaatttcag ttattagggc 300 tagaaattat gtcgaagcga ccagcagata taatcatttc cacgcccgcc tcgaaggtac 360 gccgtcgtct caacttcgac agcccatatg ccagccgtgc tgctgccccc attgtccgcg 420 tcacaaaggc aaaggcatgg gccaacaggc ccatgaatcg gaagcccagg atgtacagga 480 tgtacagaag cccagatgtt ccgaggggat gtgaaggccc atgtaaggtc cagtcttttg 540 agtctagaca cgatgtagtt catataggga aggttatgtg tattagtgat gttacccgtg 600 gtaccgggtt aacccataga gtaggtaagc gtttctgtgt taagtctgtc tatgtcttag 660 ggaagatatg gatggatgag aatatcaaga ctaagaatca cacgaatagt gtgatgttct 720 tccttgtccg tgatcgtcga cctacaggtg caccacaaga ttttggagat gtgtttaata 780 tgttcgacaa cgaacctagc actgccactg tgaagaatat gcatagagat cgttatcagg 840 tcttgaggaa atggcacgca acggttactg gtggacagta cgcgtcgaag gaacaggcat 900 tagttaagaa gttcgttagg gttaacaatt atgttgtgta taaccagcag gaagctggaa 960 aatatgagaa tcatagtgag aatgctctga tgttgtatat ggcgtgtact cacgcctcta 1020 accctgtgta tgctacattg aagatacgta tctatttcta tgattcagta tcaaattaat 1080 aaagattata ttttattgaa tatgattggt ttacatatac aacgtgatct aatacattcc 1140 ataatacatg atcaactgct ctatttacat tgttaatact aattacagca aaattattaa 1200 gcactttcaa tacttgggtt ttaaataccc ttaagaaatg accagtctga ggctgtaagg 1260 tcgtccagat tcggtaggtt agaaaacatt tgtgcatccc caacgctttc ctcaagttgt 1320 gattgaaccg tatctgcact gtgatgatgt cctggctttt caggaatggc ctggtgtggt 1380 gctctggtat cttgaaatac aggggatttg gtatctcccg aataaacacg ccattctctg 1440 gttgagctgc agtgatgggt tcccctgtgc gtgaatccat agctgtggaa acgtaatgcg 1500 atgaaatatg aacagccgca atcgaggtca acgcgacgac gcctggtccc attcttggcc 1560 agcctgtgct gcactttgat tggaacgtga gtagagtggg cctgtgaggg tgatgaaggt 1620 cgcattcttt aaagcccaat gtttgagtgc ggaattcttt tcttcatcca agaactgttc 1680 atagctggaa tcgggtcttg gattgcacag gaagatagcg ggaattccac ctctaatttg 1740 aactggctct ccgtattttg tatgtgattg ccagtccctt tgcgccccca tgaattcttt 1800 aaagtgtttt agataatgcg ggtcgacgtc atcaatgacg ttatacgagg catcattgct 1860 gtacacttta gggctaaggt cgaagtgacc acataggtag ttatgtgtac ccaacgacct 1920 agcccacatg gtcttcccgg ttcgactatc accctcaatc acaatactca tgggtctcaa 1980 aggccgcgca gcggcaccca ccacgttcac agaagcccat tcctcaagtt catcaggaac 2040 ttgatcaaaa gaagaagaaa gaaaaggaga aacataaaca tccggtggag gcgtaaaaat 2100 cctatctaaa ttagcattta aattatgaaa ttgtaaaaca taatctttgg gagctttctc 2160 ccttaaaata ttgagggccg cagccttgga ccctgaattg attgcctcgg catatgcgtc 2220 gttggcagat tggcaacctc ctctagctga tctgccatcg atctggaaaa ctccagagtc 2280 aatgaagtct ccgtctttct ccacataggc tttgacatct gaagagctct tagctctctg 2340 aatgttcgga tggaaatgtg ctgaccgggt tggggaaatg aggtcgaaga atctgttgtt 2400 tgtgcattga tatttgcctt cgaattggac gagcacgtgt agatgaggtt ccccattctc 2460 gtgcaattct ctgcaaaccc taataaataa tttatttact ggggtttcta agttttgtaa 2520 ttgggaaagg gcctcttctt tagtaagaga gcagttagga tatgttagga aataattttt 2580 agcatttata ttgaatctcc ccgctctagg catattggtg gacactcaaa cttactatgc 2640 aatcggtgga atgggggaca atttatatgt gtccaacaat ggcaaattgg taattgttgt 2700 tacatttaaa aaatttaaaa ttcaaattcc gacaaaagcg gccatccgca ttaatatt 2758 //