ID HE818460; SV 1; linear; genomic RNA; STD; VRL; 6395 BP. XX AC HE818460; XX DT 21-MAY-2012 (Rel. 112, Created) DT 21-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Tobacco mosaic virus isolate Guangyuan, complete genome XX KW complete genome. XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6395 RA Yang J.; RT ; RL Submitted (13-MAY-2012) to the INSDC. RL Yang J., Tobacco Research Institute of Chinese Academy of Agriculture, RL Tobacco disease protection, 11# Keyuan 4 Road, Laoshan Distinc, Qingdao RL 266101, Shandong Province, CHINA. XX RN [2] RA Yang J., Wang F., Shen L., Qian Y.; RT "The population variation of tobacco mosaic virus in tobacco of China"; RL Unpublished. XX DR MD5; c556b1322b0f7a1af8f93b4bf8b1a778. DR EuropePMC; PMC4100918; 25029500. XX FH Key Location/Qualifiers FH FT source 1..6395 FT /organism="Tobacco mosaic virus" FT /host="Nicotiana tabacum" FT /isolate="Guangyuan" FT /mol_type="genomic RNA" FT /country="China:Sichuan Province" FT /db_xref="taxon:12242" FT CDS 69..3419 FT /gene="relicase" FT /product="replication protein" FT /db_xref="GOA:I2HB31" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I2HB31" FT /protein_id="CCH64150.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKPVPNFQ FT KEAFDRYAEVPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLISVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKVSSYLLD FT MYKVDAGTQ" FT CDS 4903..5709 FT /gene="mp" FT /product="movement protein" FT /db_xref="GOA:I2HB32" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I2HB32" FT /protein_id="CCH64151.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQLKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK FT GKISSSDRSVPNKNYRNVKDFEGMSFKKNNLIDDDSETTVAESDSF" FT CDS 5712..6191 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q8JQ55" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q8JQ55" FT /protein_id="CCH64152.1" FT /translation="MSYNITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNRSSFESSSGLVWTSGPAT" XX SQ Sequence 6395 BP; 1852 A; 1227 C; 1547 G; 1768 T; 1 other; gtatttttac aacaattacc aacaacaaca aacaacaaac aacattacaa ttactattta 60 caattacaat ggcatacaca cagacagcta ccacatcagc tttgctggac actgtccgag 120 gaaataactc cttggtcaat gatctagcaa agcgtcgtct ttacgacaca gcggttgaag 180 agttcaacgc tcgtgaccgc aggcccaaag tgaacttttc aaaagtaata agcgaggagc 240 agacgcttat tgctacccgg gcatatccag aattccaaat tacattttat aacacgcaaa 300 acgccgtgca ttcgcttgca ggtggattgc gatctttaga actggaatat ctgatgatgc 360 aaattcccta cggatcattg acttatgaca taggcgggaa ttttgcatct catctgttca 420 agggacgagc atacgtacac tgctgcatgc ccaacctgga cgttcgagac atcatgcggc 480 atgaaggcca gaaagacagt attgaactat acctttctag gctagagaga gggggaaaac 540 cagtccccaa cttccaaaag gaagcttttg acagatacgc agaagttcct gaggacgctg 600 tctgtcacaa tactttccag acatgtgaac atcagccgat gcagcaatca ggcagagtgt 660 atgccattgc gctacacagc atatatgaca tacccgctga tgagttcggg gcggcactct 720 tgaggaaaaa cgtccatacg tgctatgccg ctttccactt ctctgagaac ctgcttcttg 780 aagattcata cgtcaatttg gacgaaatca acgcgtgttt ttcgcgcgat ggagacaaat 840 tgaccttttc ctttgcatca gagagtactc ttaattactg tcatagttat tctaatattc 900 ttaagtatgt gtgcaaaact tacttcccgg cctctaatag agaggtttac atgaaggagt 960 ttttagtcac cagggttaat acctggtttt gtaagttttc tagaatagat acttttcttt 1020 tgtacaaagg tgtggcccat aaaagtgtag atagtgagca gttttatact gcaatggaag 1080 acgcatggca ttacaaaaag actcttgcaa tgtgcaacag cgagagaatt ctcctcgagg 1140 attcatcatc agtcaattac tggttcccca aaatgagaga tatggtcatc gtaccattat 1200 tcgacatttc tttggagact agtaagagga cgcgcaagga agtcttagtg tccaaggatt 1260 tcgtgtttac agtgcttaac cacattcgaa cataccaggc gaaagctctt acatacgcga 1320 atgttttgtc cttcgtcgaa tcgattcgat cgagggtaat cattaacggt gtgacagcga 1380 ggtccgaatg ggatgtggac aaatctttgt tacaatcctt gtccatgacg ttttacctgc 1440 atactaagct tgccgttcta aaggatgact tactgattag caagtttagt ctcggttcaa 1500 aaacggtgtg tcagcatgtg tgggatgaga tttcgctggc gtttgggaac gcatttccct 1560 ccgtgaaaga gaggctcttg aacaggaaac ttatcagtgt ggcaggtgac gcattagaga 1620 tcagggtgcc tgatctatat gtgactttcc acgacagatt agtgactgag tacaaggcct 1680 ctgtggacat gcctgcgctt gacattagga agaagatgga agaaacggaa gtgatgtaca 1740 atgcactttc ggagttatcg gtgttaaggg agtctgacaa attcgatgtt gatgtttttt 1800 cccagatgtg ccaatctttg gaagttgacc cgatgacagc agcgaaggtt atagtcgcgg 1860 tcatgagcaa tgagagcggt ttgactctca catttgaacg acctacagag gcgaatgttg 1920 cgctagcttt acaggatcaa gagaaggctt cagaaggtgc tttggtagtt acctcgaggg 1980 atgttgaaga accgtccatg aagggttcaa tggccagagg agagttacaa ttagccggtc 2040 ttgctggaga tcatccggag tcgtcctatt ctaggaacga ggagatagag tctttagagc 2100 agtttcatat ggcaacggca gattcgttaa ttcgtaagca gatgagctcg attgtgtaca 2160 cgggtccgat taaagttcag caaatgaaaa actttatcga tagcctggta gcatcactat 2220 ctgctgcggt gtcgaatctc gtcaagatcc tcaaagatac agctgctatt gaccttgaaa 2280 cccgtcaaaa gtttggagtc ttggatgtcg catctaggaa gtggttgatc aaaccaacgg 2340 ccaagagtca tgcatggggg gttgtcgaaa cccacgcgag gaagtatcat gtggcgcttt 2400 tggaatatga tgagcagggt gtggtaacat gcgatgattg gagaagagtt gctgtcagct 2460 ctgagtctgt tgtttattcc gatatggcga aactcagaac tctgcgcaga ctgcttcgaa 2520 acggtgaacc gcatgtcagt agcgcaaagg ttgttcttgt ggacggagtt ccgggctgtg 2580 gaaaaaccaa agaaattctt tccagggtta attttgatga agatctaatt ctggtgcctg 2640 ggaagcaagc cgcggaaatg atcagaagac gtgcaaattc ctcagggatt attgtggcca 2700 cgaaggacaa cgttaaaacc gttgattctt tcatgatgaa ttttgggaaa agcacacgct 2760 gtcagttcaa gaggttattc attgatgaag ggttgatgtt gcatactggt tgtgttaatt 2820 ttctcgtggc gatgtcattg tgcgaaattg catatgttta cggagacaca cagcagattc 2880 catacatcaa tagagtttca ggtttcccgt accccgccca ttttgccaag ttggaagttg 2940 acgaggttga gacacgtaga actactctcc gttgtccagc cgatgtcaca cattatctga 3000 acaagagata tgagggcttt gtcatgagta cttcttcggt taaaaagtct gtttcgcagg 3060 agatggttgg cggagccgcc gtgatcaatc cgatctcaaa acccctgcat ggcaagatcc 3120 tgacgtttac ccaatcggat aaagaagctc tgctttcaag agggtattca gatgttcaca 3180 ctgtgcatga agtgcaaggc gagacatact ctgatgtttc actagttagg ttaaccccta 3240 caccagtctc catcattgca ggagatagcc cacatgtttt ggttgcattg tcgaggcaca 3300 cctgttcgct caagtactac actgttgtta tggatccttt agttagtatt attagagatc 3360 tagagaaagt tagctcgtac ttgttagata tgtataaggt cgatgcagga acacaatagc 3420 aattacagat tgactcggtg ttcaaaggtt ccaatctttt tgtggcagcg ccaaagactg 3480 gtgatatttc tgatatgcag ttttactatg acaagtgtct cccaggtaac agcaccatga 3540 tgaacaattt tgatgctgtt actatgaggt tgactgacat ttcattgaat gtcaaagatt 3600 gcatattgga tatgtccaag tctgttactg cgcctaagga tcagatcaaa ccgctaatac 3660 ctatggtacg aacggcggca gaaatgccac gccagactgg actattggaa aatttagtgg 3720 cgatgattaa aaggaacttt aacgcacccg agttgtctgg catcattgat atcgaaaata 3780 ctgcatcttt agttgtagat aagtttttcg atagttattt gcttaaagaa aaaagaaaac 3840 caaataaaaa tgtttctttg ttcagtagag agtctctcaa tagatggtta gaaaagcaag 3900 aacaggtaac aataggccag ctcgcagatt ttgatttygt ggatttgcca gctgttgatc 3960 agtacagaca catgatcaaa gcacaaccca agcaaaaatt ggacacttca atccaaacgg 4020 agtatccggc tttgcagacg attgtgtacc attcaaaaaa gatcaatgca atatttggcc 4080 cgttgtttag tgaacttact aggcaattac tggacagtgt tgattcgagc agatttttgt 4140 tttttacgag aaagacacca gcgcagattg aggatttctt cggagatctc gacagtcatg 4200 tgccgatgga tgtcttggag ctggatatat caaaatacga caaatctcag aacgaattcc 4260 actgtgcagt agaatatgag atctggcgaa gattgggttt tgaagatttc ttgggagaag 4320 tttggaagca agggcataga aagaccaccc tcaaggatta taccgcaggt atcaaaactt 4380 gcatctggta tcaaagaaag agcggggacg tcacgacgtt cattggaaac actgtgatca 4440 ttgctgcatg tttggcctcg atgcttccga tggagaaaat aatcaaggga gccttttgcg 4500 gtgacgatag tctgctgtac ttcccaaagg gttgtgagtt tccggatgtg caacactccg 4560 cgaatcttat gtggaatttt gaagcaaaac tgtttaaaaa acagtatgga tacttttgcg 4620 gaaggtatgt aatacatcac gacagaggat gcattgtgta ttacgatccc ctaaagttga 4680 tctcgaaact tggtgctaaa cacatcaagg actgggaaca cttggaggag ttcagaaggt 4740 ctctttgtga tgttgctgtt tcgttgaaca attgtgcgta ttacacacag ttggacgacg 4800 ctgtatggga ggttcataag accgcccctc caggttcgtt tgtttataaa agtctggtga 4860 agtatttgtc tgataaagtt ctttttagaa gtttgtttat agatggctct agttgttaaa 4920 ggaaaagtga atatcaatga gtttatcgac ctgacaaaaa tggagaagat cttaccgtcg 4980 atgtttaccc ctgtaaagag tgttatgtgt tccaaagttg ataaaataat ggttcatgag 5040 aatgagtcat tgtcagaggt aaaccttctt aaaggagtta agcttattga tagtggatac 5100 gtctgtttag ccggtttggt cgtcacggga gagtggaact tgcctgacaa ttgcagagga 5160 ggtgtgagcg tgtgtctggt ggacaaaagg atggaaagag ccgacgaggc cactctcgga 5220 tcttactaca cagcagctgc aaagaaaaga tttcagctca aggtcgttcc caattatgct 5280 ataaccaccc aggacgcgat gaaaaacgtc tggcaagtct tagtcaatat tagaaatgta 5340 aagatgtcag cgggtttctg tccgctctct ctggagtttg tgtcggtgtg tatcgtttat 5400 agaaataata taaaattagg tttgagagag aagattacaa acgtgagaga tggagggccc 5460 atggaactta cagaagaagt tgttgatgag ttcatggaag atgtccctat gtctatcagg 5520 cttgcaaagt ttcgatctcg aaccggaaaa aagagtgatg tccgtaaagg gaaaattagc 5580 agtagtgatc ggtcagtgcc gaacaagaac tatagaaatg ttaaggattt tgaaggaatg 5640 agttttaaaa agaataattt aatcgatgat gattcggaga ctactgtcgc cgaatcggat 5700 tcgttttaaa tatgtcttac aatatcacta ctccatctca gttcgtgttc ttgtcatcag 5760 cgtgggccga cccaatagag ttaattaatt tatgtactaa tgccttagga aatcagtttc 5820 aaacacaaca agctcgaact gtcgttcaaa gacagttcag tgaggtgtgg aaaccttcac 5880 cacaagtaac tgttaggttc cctgacagtg actttaaggt gtataggtat aatgcggtac 5940 tagacccgct agtcacagca ttgttaggtg catttgacac tagaaataga ataatagaag 6000 ttgaaaatca ggcgaacccc acgactgccg aaacgttaga cgctactcgt agagtagacg 6060 acgcaacggt ggccataagg agcgctataa ataatttagt agtagaattg atcagaggaa 6120 ccggatctta taatcgaagc tctttcgaga gctcttcagg tttggtttgg acctctggtc 6180 ctgcaacttg aggtaatcaa gatgcataat aaataacgga ttgtgtccgt aatcacacgt 6240 ggtgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 atcgcgcggg tcaaatgtat atggttcata tacatccgca ggcacgtaat aaagcgaggg 6360 gttcgaatcc ccccgttacc cccggtaggg gccca 6395 //