ID HE818419; SV 1; linear; genomic RNA; STD; VRL; 6396 BP. XX AC HE818419; XX DT 21-MAY-2012 (Rel. 112, Created) DT 21-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Tobacco mosaic virus isolate Xiongfan-2, complete genome XX KW complete genome. XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6396 RA Yang J.; RT ; RL Submitted (13-MAY-2012) to the INSDC. RL Yang J., Tobacco Research Institute of Chinese Academy of Agriculture, RL Tobacco disease protection, 11# Keyuan 4 Road, Laoshan Distinc, Qingdao RL 266101, Shandong Province, CHINA. XX RN [2] RA Yang J.; RT "The population variation of tobacco mosaic virus in tobacco of China"; RL Unpublished. XX DR MD5; 4256b18c3d7381e536da4994f3c378e7. XX FH Key Location/Qualifiers FH FT source 1..6396 FT /organism="Tobacco mosaic virus" FT /host="Nicotiana tabacum" FT /isolate="Xiongfan-2" FT /mol_type="genomic RNA" FT /country="China:Hubei province" FT /collected_by="Jinguang Yang" FT /db_xref="taxon:12242" FT CDS 70..3420 FT /gene="relicase" FT /product="replication protein" FT /db_xref="GOA:I2HAQ8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I2HAQ8" FT /protein_id="CCH64027.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ FT KEAFDRYAEVPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT YTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSMLRESDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRNGEPHVSSAKVILVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQ" FT CDS 4904..5710 FT /gene="mp" FT /product="movement protein" FT /db_xref="GOA:I2HAQ9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I2HAQ9" FT /protein_id="CCH64028.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITSVRDGGPIELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK FT GKISSSDRSMPNKNYRNVKDFGEMSFKKNNLIDDDSETTVAESDSF" FT CDS 5713..6192 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q8JQ55" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q8JQ55" FT /protein_id="CCH64029.1" FT /translation="MSYNITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNRSSFESSSGLVWTSGPAT" XX SQ Sequence 6396 BP; 1863 A; 1225 C; 1544 G; 1764 T; 0 other; gtatttttac aacaattacc aacaacaaca acaaacaaca acaacattac attactattt 60 acaattacaa tggcatacac acagacagct accacatcag ctttgctgga cactgtccga 120 ggaaataact ccttggtcaa tgatctagca aagcgtcgtc tttacgacac agcggttgaa 180 gagtttaacg ctcgagaccg caggcccaaa gtgaactttt caaaagtaat aagcgaggag 240 cagacgctta ttgctacccg ggcatatcca gaattccaaa tcacatttta taacacgcaa 300 aatgccgtgc attcgcttgc aggtggattg cgatctttag aactggaata tctgatgatg 360 caaattccct acggatcatt gacttatgac ataggtggga atttcgcatc gcatctgttc 420 aagggacgag catacgtaca ctgctgcatg cccaacctgg acgttcgaga catcatgcgg 480 catgaaggcc agaaagacag tattgaacta tacctttcta ggctagagag agggggaaaa 540 acagtcccca acttccaaaa ggaagcattt gacagatacg cagaagttcc tgaggacgct 600 gtctgtcaca atactttcca gacatgtgaa catcagccga tgcagcaatc aggcagagtg 660 tatgccattg cgctacacag catatatgac atacccgctg atgagttcgg ggcggcactc 720 ctgaggaaaa acgtccatac gtgctatgcc gctttccact tctctgagaa cctgcttctt 780 gaagattcat acgtcaattt ggacgaaatc aacgcgtgtt tttcgcgcga tggagacaaa 840 ttgacctttt cttttgcatc agagagtact cttaattact gtcatagtta ttctaatatt 900 cttaagtatg tgtgcaaaac ttacttcccg gcctctaata gagaggttta catgaaggag 960 tttttagtca ccagggttaa tacctggttt tgtaagtttt ctagaataga tacttttctt 1020 ttgtacaaag gtgtggccca taaaagtgta gatagtgagc agttttatac tgcaatggag 1080 gacgcatggc attacaaaaa gactcttgca atgtgcaaca gtgagagaat tctccttgag 1140 gattcatcat cagtcaatta ctggtttccc aaaatgaggg atatggtcat tgtaccatta 1200 ttcgacattt ctttggagac tagtaagagg acgcgcaagg aagtcttagt gtccaaggat 1260 ttcgtgtata cagtgcttaa ccacattcga acataccagg cgaaagctct tacatacgca 1320 aatgttttgt ccttcgtcga atcgattcga tcgagggtaa tcattaacgg tgtgacagcg 1380 aggtccgaat gggatgtgga caaatctttg ttacaatcct tgtccatgac gttttacttg 1440 catactaagc ttgccgttct aaaggatgac ttactgatta gcaagtttag tctcggttca 1500 aaaacggtgt gtcagcatgt gtgggatgag atttcgctgg cgtttgggaa cgcgtttccc 1560 tccgtaaaag agaggctttt gaacaggaaa cttatcagag tggcaggtga cgcattagag 1620 atcagggtgc ctgatctata tgtgactttc cacgacagat tagtgactga gtacaaggcc 1680 tctgtggaca tgcctgcgct cgacattagg aagaagatgg aggaaacgga agtgatgtac 1740 aatgcacttt cggagttatc gatgttaagg gagtctgaca aattcgatgt tgatgttttt 1800 tcccagatgt gccaatcttt ggaagttgac ccaatgacag cagcgaaggt tatagtcgcg 1860 gtcatgagca atgagagcgg tctgactctc acatttgaac gacctacaga ggcgaatgtt 1920 gcgctagctt tacaggatca agagaaggct tcagaaggtg ctttggtagt tacctcaagg 1980 gaagttgaag aaccgtccat gaagggttca atggccagag gagagttaca attagccggt 2040 cttgctggag atcatccgga gtcgtcctat tctaggaacg aggagataga gtctttagag 2100 cagtttcata tggcaacggc agattcgtta attcgtaagc agatgagttc cattgtgtac 2160 acgggtccga ttaaagttca gcaaatgaaa aactttatcg atagcctggt agcatcacta 2220 tctgctgcgg tgtcgaatct cgtcaagatc ctcaaagata cagctgctat tgaccttgag 2280 acccgtcaaa agtttggagt cttagatgtt gcgtctagga agtggttgat caaaccaacg 2340 gccaagagtc atgcatgggg tgttgtcgaa acccacgcga ggaagtatca tgtggcgctt 2400 ttggaatatg atgagcaagg tgtggtaaca tgcgatgatt ggagaagagt agctgtcagc 2460 tcagagtctg ttgtttattc cgacatggcg aaactcagaa ctctgcgcag actgcttcga 2520 aacggtgaac cgcatgtcag tagcgcaaag gttattcttg tggacggagt tccgggctgt 2580 ggaaaaacca aagaaattct ttccagggtt aattttgatg aagatctgat tctagtacct 2640 gggaagcaag ccgcggaaat gatcagaaga cgtgcgaatt cctcagggat tattgtggcc 2700 acgaaggaca acgttaaaac cgttgattct ttcatgatga attttgggaa aagcacacgc 2760 tgtcagttca agaggttatt cattgatgaa gggttgatgt tgcatactgg ttgtgttaat 2820 ttccttgtgg cgatgtctct gtgcgaaatt gcatatgttt acggagacac acagcagatt 2880 ccatacatca atagagtttc aggattcccg taccccgccc attttgccaa attggaagtc 2940 gacgaggttg agacacgcag aactactctt cgttgtccag ccgatgtcac acattatctg 3000 aacaggagat atgagggctt tgtcatgagt acttcttcgg ttaaaaagtc tgtttcgcag 3060 gagatggttg gcggagctgc cgtgatcaat ccgatctcaa aacccctgca tggcaagatc 3120 ctgacgttta cccaatcgga taaagaagct ctgctttcga gagggtattc agatgttcac 3180 actgtgcatg aagtgcaagg cgagacatac tctgatgttt cactagttag gttaacccct 3240 acaccagtct ccatcattgc aggagacagc ccacatgttt tggttgcatt gtcgaggcac 3300 acctgttcgc tcaagtacta cactgttgtt atggatcctt tagttagtat tattagagat 3360 ctagagaaac ttagctcgta cttgttagat atgtataagg tcgatgctgg aacacaatag 3420 caattacaga ttgactcggt gttcaaaggt tccaatcttt ttgtggcagc gccaaagact 3480 ggtgatattt ctgatatgca gttttactat gacaagtgtc tcccaggtaa cagcaccatg 3540 atgaataatt tcgatgctgt taccatgagg ttgactgaca tttcattgaa tgtcaaagat 3600 tgcatattgg atatgtccaa gtctgttgct gcgcctaagg atcagatcaa accactaata 3660 cctatggtac gaacggcggc agaaatgcca cgccagactg gactattgga aaatttagtg 3720 gcgatgatta aaaggaactt taacgcaccc gagttgtccg gcatcattga tattgaaaat 3780 actgcatctt tagttgtaga taagtttttc gatagttatt tgcttaaaga aaaaagaaaa 3840 ccaaataaaa atgtttcttt gttcagtaga gagtctctca atagatggtt ggaaaagcaa 3900 gaacaggtaa caataggcca gctcgcagat tttgattttg tggatctgcc agcagttgat 3960 cagtacagac acatgatcaa agcacaaccc aagcaaaagt tggacacttc aatccaaacg 4020 gagtacccgg ctttgcagac gattgtgtac cattcaaaaa agatcaatgc aatatttggc 4080 ccgttgttta gtgagctaac taggcaatta ctggacagtg ttgattcgag cagatttttg 4140 tttttcacaa gaaagacacc agcgcagatt gaggatttct tcggagatct cgacagtcat 4200 gtgccgatgg atgtcttgga gctggatata tcaaaatacg acaaatctca gaatgaattc 4260 cactgtgcag tagaatatga gatctggaga agattgggtt ttgaagattt cttgggagaa 4320 gtttggaagc aagggcatag aaagaccacc ctcaaggatt ataccgcagg tatcaaaact 4380 tgcatctggt atcaaagaaa gagcggggac gtcacgacgt tcattggaaa cactgtgatc 4440 attgctgcat gtttggcctc gatgcttccg atggagaaaa taatcaaagg agccttttgt 4500 ggcgacgata gtctgctgta cttcccaaag ggttgtgagt ttccggatgt gcaacactcc 4560 gcgaatctta tgtggaattt tgaagcaaaa ctgtttaaaa aacagtatgg atacttttgc 4620 ggaagatatg taatacatca cgacagagga tgcattgtgt attacgatcc cctaaagttg 4680 atctcgaaac ttggtgctaa acacatcaag gattgggaac acttggagga gttcagaagg 4740 tctctttgtg atgttgctgt ttcgttgaac aattgtgcgt attacacaca gttggacgac 4800 gctgtatggg aggttcataa aaccgcccct ccaggttcgt ttgtttataa aagtctggtg 4860 aagtatttgt ctgataaagt tctttttaga agtttgttta tagatggctc tagttgttaa 4920 aggaaaagtg aatatcaatg agtttatcga cctgacaaaa atggagaaga tcttaccgtc 4980 gatgtttacc cctgtaaaga gtgtcatgtg ttccaaagtt gataaaataa tggttcacga 5040 gaatgagtca ttgtcagaag taaaccttct taaaggagtt aagcttattg atagtggata 5100 cgtctgttta gccggattgg tcgtcacggg cgagtggaac ttgcctgata attgcagagg 5160 aggtgtgagc gtgtgtctag tggacaaaag gatggaaaga gccgacgagg ccactctcgg 5220 atcttattac acagcagctg caaagaaaag atttcagttc aaggtcgttc ccaattatgc 5280 tataaccacc caggacgcga tgaaaaacgt ctggcaagtt ttagtcaata ttagaaatgt 5340 aaagatgtca gcgggtttct gtccgctttc tctggagttt gtgtcggtgt gtatcgttta 5400 tagaaataat ataaaattag gtctgagaga gaagattaca agcgtgagag atggagggcc 5460 catagaactt acagaagaag ttgttgatga gttcatggaa gatgtcccta tgtcaatcag 5520 gcttgcaaag tttcgatctc gaaccggaaa aaagagtgat gtccgtaaag ggaaaattag 5580 tagtagtgat cggtcaatgc cgaacaagaa ctatagaaat gttaaggatt ttggagaaat 5640 gagttttaaa aagaataatt taatcgatga tgattcggag actactgtcg ccgaatcgga 5700 ttcgttttaa atatgtctta caatatcact actccgtctc agttcgtgtt cttgtcatca 5760 gcgtgggccg acccaataga gttaattaat ttatgtacta atgccttagg taatcagttt 5820 caaacacaac aagctagaac tgtcgttcaa agacaattca gtgaggtgtg gaaaccttca 5880 ccacaagtaa ctgttaggtt ccctgatagt gactttaagg tgtacaggta caatgcggta 5940 ttagacccgc tagtcacagc actgttaggt gcatttgaca ctagaaatag aataatagaa 6000 gttgaaaatc aggcgaaccc cacgactgcc gaaacgttag acgctactcg tagagtagac 6060 gacgcgacgg tggccataag gagcgctata aataatttag tagtagaatt gatcagagga 6120 accggatctt ataatcggag ctctttcgag agctcttctg gtttggtttg gacctctggt 6180 cctgcaactt gaggtagtca agatgcgtaa taaataacgg attgtgtccg taatcacacg 6240 tggtgcgtac gataacgcat agtgtttttc cctccactta aatcgaaggg ttgtgtcttg 6300 gatcgcgcgg gtcaaatgta tatggttcat atacatccgc aggcacgtaa taaagcgagg 6360 ggttcgaatc ccccccgtac ccccggtagg ggccca 6396 //