ID HE818418; SV 1; linear; genomic RNA; STD; VRL; 6394 BP. XX AC HE818418; XX DT 21-MAY-2012 (Rel. 112, Created) DT 21-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Tobacco mosaic virus isolate Xiongfan-1, complete genome XX KW complete genome. XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6394 RA Yang J.; RT ; RL Submitted (13-MAY-2012) to the INSDC. RL Yang J., Tobacco Research Institute of Chinese Academy of Agriculture, RL Tobacco disease protection, 11# Keyuan 4 Road, Laoshan Distinc, Qingdao RL 266101, Shandong Province, CHINA. XX RN [2] RA Yang J.; RT "The population variation of tobacco mosaic virus in tobacco of China"; RL Unpublished. XX DR MD5; 4a3addc15b3c93bbb0e1b36784635c8b. XX FH Key Location/Qualifiers FH FT source 1..6394 FT /organism="Tobacco mosaic virus" FT /host="Nicotiana tabacum" FT /isolate="Xiongfan-1" FT /mol_type="genomic RNA" FT /country="China:Hubei province" FT /collected_by="Jinguang Yang" FT /db_xref="taxon:12242" FT CDS 69..3419 FT /gene="relicase" FT /product="replication protein" FT /db_xref="GOA:I2HAQ2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I2HAQ2" FT /protein_id="CCH64024.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHESQKDSIELYLSRLDRGGKPVPNFQ FT KEAFDRYAEFPEDAVCHNTFQTCEHQPMQQPGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKSSVDMPALDIRKRMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCKSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLTGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRDGEPHVSNAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEVAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVSGAAVINPISKPLHGKILTFTQSDKEALLSRGYSEVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQ" FT CDS 4902..5708 FT /gene="mp" FT /product="movement protein" FT /db_xref="GOA:I2HAQ3" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I2HAQ3" FT /protein_id="CCH64025.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKVMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK FT GKNSSSDRSQPNKNYGNVKDFGGMSFKKNNLIDDDLETSVAESDSF" FT CDS 5711..6190 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:I2HAQ7" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:I2HAQ7" FT /protein_id="CCH64026.1" FT /translation="MSYNITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDVTRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT" XX SQ Sequence 6394 BP; 1869 A; 1220 C; 1531 G; 1774 T; 0 other; gtatttttac aacaattacc aacaacaaca aacaacaaac aacattacaa ttactattta 60 caattacaat ggcatacaca cagacagcta ccacatcagc tttgctggac actgtccgag 120 gaaacaattc tttggtcaat gatctagcaa agcgtcgtct ttacgacaca gcggttgacg 180 agttcaacgc tcgtgaccgc aggcccaaag tgaacttttc aaaagtgata agcgaagagc 240 agacgcttat tgctacccgg gcgtatccag aattccaaat cacattttat aacacgcaaa 300 atgccgtgca ttcgcttgca ggtggattgc gatctttaga actggaatat ctgatgatgc 360 aaattcccta cggatcacta acttatgaca taggtgggaa tttcgcatca catctgttca 420 agggacgagc atacgttcac tgctgcatgc ctaaccttga cgtccgtgac attatgcggc 480 acgaaagcca gaaagacagc attgaactgt acctttccag actggataga gggggaaaac 540 cagtcccaaa cttccaaaag gaagcatttg acagatatgc agaatttcct gaggacgctg 600 tctgtcacaa tactttccag acatgtgaac atcagccgat gcagcaacca ggcagagtgt 660 acgccattgc gctacacagc atatatgata tacccgctga tgagttcggg gcggcactct 720 tgaggaaaaa cgtccatacg tgctatgccg ctttccattt ctctgagaac ctgcttcttg 780 aagattcgta cgtcaacttg gacgaaatca acgcgtgttt ttcgcgtgac ggagacaaat 840 tgaccttttc ttttgcatca gagagtactc ttaattactg ccacagttat tctaatattc 900 ttaagtatgt gtgcaaaact tacttcccgg cctctaatag agaggtttac atgaaggagt 960 ttttagtcac cagggttaat acctggtttt gtaagttttc tagaatagat acttttcttt 1020 tgtacaaagg agtagcccat aaaagtgtag atagtgagca gttttatact gcaatggaag 1080 acgcatggca ttacaaaaag actcttgcaa tgtgcaacag cgagagaatt ctccttgagg 1140 attcatcatc agtcaattac tggtttccca aaatgaggga tatggtcatc gtaccattat 1200 tcgacatttc tttggagact agtaagagga cgcgcaagga agtcttagtg tccaaggatt 1260 ttgtgtttac tgtgcttaac cacattcgga cttaccaggc gaaagctctt acatacgcaa 1320 atgttttgtc cttcgtcgaa tctatccgat cgagggtaat cattaacggt gtgacagcga 1380 ggtctgaatg ggatgtggac aaatcattgt tacaatcctt gtccatgacg ttttacctgc 1440 atactaaact tgccgttctt aaggacgatt tactgattag caagtttagt cttggttcaa 1500 aaacagtgtg tcagcatgtg tgggatgaga tttcgctggc gtttgggaat gcttttccct 1560 ctgtgaaaga gaggcttttg aacaggaaac ttatcagagt ggcaggcgac gcattagaga 1620 tcagggtgcc tgatctatat gtgactttcc acgacagatt agtgaccgag tataaatcct 1680 ctgtggacat gcctgcgctt gacattagga agaggatgga agaaacggaa gtgatgtaca 1740 atgcactctc agagttatcg gtgttaaggg agtctgacaa attcgatgtt gatgtttttt 1800 cccagatgtg caaatctttg gaagtcgacc caatgacagc agcgaaggtt atagtcgcgg 1860 tcatgagcaa tgagagtggt ctgactctca catttgaacg accaacagag gcgaatgttg 1920 cgctagcttt gcaagatcaa gagaaggcct cagaaggtgc cttggtagtc acctcgagag 1980 aagttgaaga accgtccatg aagggttcga tggccagagg agagttacaa ttagctggtc 2040 ttaccggaga tcatccagag tcgtcctatt ctaggaacga ggagatagag tctttagagc 2100 agtttcacat ggcaacggca gattcgttaa ttcgtaagca aatgagttcg attgtgtaca 2160 cgggtccgat taaagttcag caaatgaaaa actttatcga tagcctggta gcatcactat 2220 ctgctgcggt gtcgaatctt gtcaagatcc taaaagatac agctgctatt gaccttgaaa 2280 cccgtcaaaa gttcggagtt ttggatgttg catctaggaa gtggttgatc aaaccgacgg 2340 ccaagagtca cgcatggggt gttgttgaaa cccacgcgag gaagtatcat gtggcacttt 2400 tggaatatga tgagcaaggc atagtaacgt gcgacgattg gagaagagta gcagtcagct 2460 ctgagtctgt tgtttattcc gacatggcta aactcagaac cctgcgcaga ctgcttcgag 2520 acggagaacc gcatgttagc aacgcaaagg ttgttctagt ggatggagtt ccgggctgtg 2580 gaaaaacaaa agaaattctc tcaagagtta attttgatga ggatctgatt ctagttcctg 2640 gaaagcaggc cgcggaaatg attaggagac gagcgaattc ctcagggatt attgtggcca 2700 cgaaggacaa cgttaaaacc gttgattctt tcatgatgaa ttttgggaaa agcacacgct 2760 gtcagttcaa gaggctattc attgatgaag gattgatgtt gcatactggt tgtgttaatt 2820 ttcttgtggc gatgtcattg tgcgaagttg catatgtcta cggagacaca cagcaaattc 2880 catacatcaa cagagtatca ggattcccgt accccgccca ttttgccaaa ttggaagttg 2940 acgaggttga gacgcgcaga actactctcc gttgtccagc tgatgtcaca cactatctga 3000 acagaagata tgagggcttt gtcatgagta cttcttcggt taagaagtct gtttcgcagg 3060 agatggtcag cggagccgct gtgatcaatc cgatctcaaa acctttgcat ggtaagatct 3120 tgacctttac ccaatcggat aaagaagctc ttctttcgag agggtactca gaagttcata 3180 ctgtgcacga agtgcaagga gagacatact cagatgtttc tctagtcagg ttgaccccta 3240 caccagtctc catcatcgca ggagacagcc cacatgtttt ggttgcactg tcgaggcata 3300 cttgttctct taagtactac actgtagtta tggatccttt agttagcatt attagagatt 3360 tagagaaact tagttcgtac ttgttagata tgtataaggt cgatgcaggc acacaatagc 3420 aattacagat tgactcggtg ttcaaaggtt ctaatctttt tgtggcagct ccgaagactg 3480 gtgacatttc tgatatgcag ttttactatg acaagtgtct cccaggcaac agcaccatga 3540 tgaataattt tgatgctgtt accatgaggt tgactgacat ttcattaaat gtcaaagatt 3600 gcatattaga tatgtctaag tctgttgctg cgcctaaaga tcaggtcaaa ccactaatac 3660 caatggttcg aacggcggca gaaatgccac gccagactgg actattggaa aatttggtgg 3720 cgatgattaa aaggaacttt aacgcacccg agttatctgg cataattgat atcgagaata 3780 ctgcatcctt agttgtagat aagttttttg atagttattt gcttaaagaa aaaagaaaac 3840 caaataaaaa tgtttctttg ttcagtagag agtctctcaa tagatggtta gaaaagcagg 3900 aacaggtaac aataggtcaa ctcgcagatt ttgattttgt ggacttgcca gcagttgatc 3960 agtacagaca catgatcaaa gcacaaccta agcagaaact ggacacttcg atccaaacgg 4020 agtacccggc tttgcagacg attgtgtacc attcaaaaaa gatcaacgca atttttggcc 4080 cattgtttag cgagctcact aggcaattac tggacagtgt tgattcaagc agatttttgt 4140 tttttacaag aaagacaccg gcgcagattg aggatttctt tggagatctt gacagtcacg 4200 taccgatgga tgtcttggag ctggacatat caaagtatga caaatctcag aatgaattcc 4260 actgtgcagt agaatacgag atctggagaa gattgggttt tgaagacttc ttgggagaag 4320 tttggaagca agggcatagg aaaaccaccc tcaaggatta taccgcaggt atcaagactt 4380 gtatttggta tcaaagaaag agcggggatg tcacgacgtt cattggaaat actgtgatca 4440 ttgctgcatg tttggcctcg atgcttccga tggaaaagat aatcaaggga gccttttgcg 4500 gtgacgatag tctgctgtac ttcccaaagg ggtgcgagtt ccggatgtgc aacactccgc 4560 gaatcttatg tggaattttg aagcaaaact gtttaaaaaa cagtatggat acttttgcgg 4620 aagatatgta atacatcacg acagaggatg cattgtgtat tacgatcccc taaagttgat 4680 ctcgaaactt ggtgctaaac acatcaagga ttgggaacac ttggaggagt tcagaaggtc 4740 tctttgtgat gttgctgttt cgttgaacaa ttgtgcgtat tacacacagt tggacgacgc 4800 tgtatgggag gttcataaaa ccgcccctcc aggttcgttt gtttataaaa gtctggtgaa 4860 gtatttgtct gataaagttc tttttagaag tttgtttata gatggctcta gttgttaaag 4920 ggaaagtgaa catcaatgag tttatcgacc tgacaaaaat ggaaaagatc ttaccgtcga 4980 tgtttactcc agtgaagagt gtcatgtgtt ccaaagttga taaagttatg gttcatgaga 5040 atgaatcatt gtcagaggtg aaccttctta aaggagttaa gcttattgat agtggatacg 5100 tttgtttagc cggtctggtc gtcacgggcg aatggaactt gcctgacaat tgcagaggag 5160 gtgtgagcgt gtgtctggtg gacaaaagga tggaaagagc agacgaagcc actctcggat 5220 cctattacac agcagctgca aagaaaagat tccagttcaa ggtcgttccc aattatgcta 5280 taaccaccca ggacgcaatg aaaaacgtct ggcaagtgtt agtcaatatt agaaatgtga 5340 agatgtctgc gggtttctgt ccgctttctc tggagtttgt gtcggtatgt atcgtttata 5400 gaaataatat aaaattaggt ttgagagaga aaattacaaa cgtgagagac ggaggtccca 5460 tggaacttac agaggaagtt gttgatgagt tcatggaaga tgtacctatg tcaattaggc 5520 ttgcaaagtt tcgatctcga accggaaaaa agagtgatgt ccgtaaaggg aaaaatagta 5580 gtagtgatcg gtcgcagccg aacaagaact atggaaatgt taaagatttt ggaggaatga 5640 gttttaaaaa gaataattta atcgatgatg atttggagac ttctgtcgcc gaatcggatt 5700 cgttttaaat atgtcttaca atattactac tccatctcag ttcgtgttct tgtcatcagc 5760 gtgggctgac ccgatagagt taattaattt atgtactaat gccttaggta atcagttcca 5820 aacacaacaa gctcgaactg tcgttcaaag acagttcagt gaggtgtgga aaccttcacc 5880 acaagtaact gttaggttcc ccgatagtga ttttaaggtg tataggtaca atgcggtatt 5940 agacccgcta gtcactgcac tgttaggtgc ttttgacact agaaatagaa taatagaagt 6000 tgaaaatcaa gcaaacccca cgactgccga aacgttagat gttactcgta gagtagacga 6060 cgcaacggtg gccataagga gcgcgataaa taatttaata gtagaattga tcagaggaac 6120 tggatcttat aatcggagct ctttcgagag ctcttctggt ttggtttgga cctctggtcc 6180 tgcaacttga ggtagtcaag ttgcataata aataacggat tgtgtccgta atcacacgtg 6240 gtgcgtacga taacgcatag tgtttttccc tccacttaaa tcgaagggtt gtgtcttgga 6300 tcgcgcgggt caaatgtata tggttcatat acatccgcag gcacgtaata aagcgagggg 6360 ttcgaatccc ccccgtaccc ccggtagggg ccca 6394 //