ID HE818417; SV 1; linear; genomic RNA; STD; VRL; 6395 BP. XX AC HE818417; XX DT 21-MAY-2012 (Rel. 112, Created) DT 19-MAR-2013 (Rel. 116, Last updated, Version 2) XX DE Tobacco mosaic virus isolate Chuxiong-1, complete genome XX KW complete genome. XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6395 RA Yang J.; RT ; RL Submitted (13-MAY-2012) to the INSDC. RL Yang J., Tobacco Research Institute of Chinese Academy of Agriculture, RL Tobacco disease protection, 11# Keyuan 4 Road, Laoshan Distinc, Qingdao RL 266101, Shandong Province, CHINA. XX RN [2] RX DOI; 10.3390/s121216685. RX PUBMED; 23211755. RA Yang J.G., Wang F.L., Chen D.X., Shen L.L., Qian Y.M., Liang Z.Y., RA Zhou W.C., Yan T.H.; RT "Development of a one-step immunocapture real-time RT-PCR assay for RT detection of tobacco mosaic virus in soil"; RL Sensors (Basel) 12(12):16685-16694(2012). XX DR MD5; 6463c7f7833cd20e0efd055bcd1ee1c7. DR EuropePMC; PMC3571805; 23211755. XX FH Key Location/Qualifiers FH FT source 1..6395 FT /organism="Tobacco mosaic virus" FT /host="Nicotiana tabacum" FT /isolate="Chuxiong-1" FT /mol_type="genomic RNA" FT /country="China:Yunnan province" FT /collected_by="Jinguang Yang" FT /db_xref="taxon:12242" FT CDS 69..3419 FT /gene="relicase" FT /product="replication protein" FT /db_xref="GOA:I2HAQ2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I2HAQ2" FT /protein_id="CCH64021.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHESQKDSIELYLSRLDRGGKPVPNFQ FT KEAFDRYAEFPEDAVCHNTFQTCEHQPMQQPGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKSSVDMPALDIRKRMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCKSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLTGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRDGEPHVSNAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEVAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVSGAAVINPISKPLHGKILTFTQSDKEALLSRGYSEVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQ" FT CDS 4903..5709 FT /gene="mp" FT /product="movement protein" FT /db_xref="GOA:I2HAQ3" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I2HAQ3" FT /protein_id="CCH64022.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKVMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK FT GKNSSSDRSQPNKNYGNVKDFGGMSFKKNNLIDDDLETSVAESDSF" FT CDS 5712..6191 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q8JQ53" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q8JQ53" FT /protein_id="CCH64023.1" FT /translation="MSYNITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT" XX SQ Sequence 6395 BP; 1864 A; 1219 C; 1536 G; 1776 T; 0 other; gtatttttac aacaattacc aacaacaaca aacaacaaac gacattacaa ttactattta 60 caattacaat ggcatacaca cagacagcta ccacatcagc tttgctggac actgtccgag 120 gaaacaattc tttggtcaat gatctagcaa agcgtcgtct ttacgacaca gcggttgacg 180 agttcaacgc tcgtgaccgc aggcccaaag tgaacttttc aaaagtgata agcgaagagc 240 agacgcttat tgctacccgg gcgtatccag aattccaaat cacattttat aacacgcaaa 300 atgccgtgca ttcgcttgca ggtggattgc gatctttaga actggaatat ctgatgatgc 360 aaattcccta cggatcacta acttatgaca taggtgggaa tttcgcatca catctgttca 420 agggacgagc atacgttcac tgctgcatgc ctaaccttga cgtccgtgac attatgcggc 480 acgaaagcca gaaagacagc attgaactgt acctttccag actggataga gggggaaaac 540 cagtcccaaa cttccaaaag gaagcatttg acagatatgc agaatttcct gaggacgctg 600 tctgtcacaa tactttccag acatgtgaac atcagccgat gcagcaacca ggcagagtgt 660 acgccattgc gctacacagc atatatgata tacccgctga tgagttcggg gcggcactct 720 tgaggaaaaa cgtccatacg tgctatgccg ctttccattt ctctgagaac ctgcttcttg 780 aagattcgta cgtcaacttg gacgaaatca acgcgtgttt ttcgcgtgac ggagacaaat 840 tgaccttttc ttttgcatca gagagtactc ttaattactg ccacagttat tctaatattc 900 ttaagtatgt gtgcaaaact tacttcccgg cctctaatag agaggtttac atgaaggagt 960 ttttagtcac cagggttaat acctggtttt gtaagttttc tagaatagat acttttcttt 1020 tgtacaaagg agtagcccat aaaagtgtag atagtgagca gttttatact gcaatggaag 1080 acgcatggca ttacaaaaag actcttgcaa tgtgcaacag cgagagaatt ctccttgagg 1140 attcatcatc agtcaattac tggtttccca aaatgaggga tatggtcatc gtaccattat 1200 tcgacatttc tttggagact agtaagagga cgcgcaagga agtcttagtg tccaaggatt 1260 ttgtgtttac tgtgcttaac cacattcgga cttaccaggc gaaagctctt acatacgcaa 1320 atgttttgtc cttcgtcgaa tctatccgat cgagggtaat cattaacggt gtgacagcga 1380 ggtctgaatg ggatgtggac aaatcattgt tacaatcctt gtccatgacg ttttacctgc 1440 atactaaact tgccgttctt aaggacgatt tactgattag caagtttagt cttggttcaa 1500 aaacagtgtg tcagcatgtg tgggatgaga tttcgctggc gtttgggaat gcttttccct 1560 ctgtgaaaga gaggcttttg aacaggaaac ttatcagagt ggcaggcgac gcattagaga 1620 tcagggtgcc tgatctatat gtgactttcc acgacagatt agtgaccgag tataaatcct 1680 ctgtggacat gcctgcgctt gacattagga agaggatgga agaaacggaa gtgatgtaca 1740 atgcactctc agagttatcg gtgttaaggg agtctgacaa attcgatgtt gatgtttttt 1800 cccagatgtg caaatctttg gaagtcgacc caatgacagc agcgaaggtt atagtcgcgg 1860 tcatgagcaa tgagagtggt ctgactctca catttgaacg accaacagag gcgaatgttg 1920 cgctagcttt gcaagatcaa gagaaggcct cagaaggtgc cttggtagtc acctcgagag 1980 aagttgaaga accgtccatg aagggttcga tggccagagg agagttacaa ttagctggtc 2040 ttaccggaga tcatccagag tcgtcctatt ctaggaacga ggagatagag tctttagagc 2100 agtttcacat ggcaacggca gattcgttaa ttcgtaagca aatgagttcg attgtgtaca 2160 cgggtccgat taaagttcag caaatgaaaa actttatcga tagcctggta gcatcactat 2220 ctgctgcggt gtcgaatctt gtcaagatcc taaaagatac agctgctatt gaccttgaaa 2280 cccgtcaaaa gttcggagtt ttggatgttg catctaggaa gtggttgatc aaaccgacgg 2340 ccaagagtca cgcatggggt gttgttgaaa cccacgcgag gaagtatcat gtggcacttt 2400 tggaatatga tgagcaaggc atagtaacgt gcgacgattg gagaagagta gcagtcagct 2460 ctgagtctgt tgtttattcc gacatggcta aactcagaac cctgcgcaga ctgcttcgag 2520 acggagaacc gcatgttagc aacgcaaagg ttgttctagt ggatggagtt ccgggctgtg 2580 gaaaaacaaa agaaattctc tcaagagtta attttgatga ggatctgatt ctagttcctg 2640 gaaagcaggc cgcggaaatg attaggagac gagcgaattc ctcagggatt attgtggcca 2700 cgaaggacaa cgttaaaacc gttgattctt tcatgatgaa ttttgggaaa agcacacgct 2760 gtcagttcaa gaggctattc attgatgaag gattgatgtt gcatactggt tgtgttaatt 2820 ttcttgtggc gatgtcattg tgcgaagttg catatgtcta cggagacaca cagcaaattc 2880 catacatcaa cagagtatca ggattcccgt accccgccca ttttgccaaa ttggaagttg 2940 acgaggttga gacgcgcaga actactctcc gttgtccagc tgatgtcaca cactatctga 3000 acagaagata tgagggcttt gtcatgagta cttcttcggt taagaagtct gtttcgcagg 3060 agatggtcag cggagccgct gtgatcaatc cgatctcaaa acctttgcat ggtaagatct 3120 tgacctttac ccaatcggat aaagaagctc ttctttcgag agggtactca gaagttcata 3180 ctgtgcacga agtgcaagga gagacatact cagatgtttc tctagtcagg ttgaccccta 3240 caccagtctc catcatcgca ggagacagcc cacatgtttt ggttgcactg tcgaggcata 3300 cttgttctct taagtactac actgtagtta tggatccttt agttagcatt attagagatt 3360 tagagaaact tagttcgtac ttgttagata tgtataaggt cgatgcaggc acacaatagc 3420 aattacagat tgactcggtg ttcaaaggtt ctaatctttt tgtggcagct ccgaagactg 3480 gtgacatttc tgatatgcag ttttactatg acaagtgtct cccaggcaac agcaccatga 3540 tgaataattt tgatgctgtt accatgaggt tgactgacat ttcattaaat gtcaaagatt 3600 gcatattaga tatgtctaag tctgttgctg cgcctaaaga tcaggtcaaa ccactaatac 3660 caatggttcg aacggcggca gaaatgccac gccagactgg actattggaa aatttggtgg 3720 cgatgattaa aaggaacttt aacgcacccg agttatctgg cataattgat atcgagaata 3780 ctgcatcctt agttgtagat aagttttttg atagttattt gcttaaagaa aaaagaaaac 3840 caaataaaaa tgtttctttg ttcagtagag agtctctcaa tagatggtta gaaaagcagg 3900 aacaggtaac aataggtcaa ctcgcagatt ttgattttgt ggacttgcca gcagttgatc 3960 agtacagaca catgatcaaa gcacaaccta agcagaaact ggacacttcg atccaaacgg 4020 agtacccggc tttgcagacg attgtgtacc attcaaaaaa gatcaacgca atttttggcc 4080 cattgtttag cgagctcact aggcaattac tggacagtgt tgattcaagc agatttttgt 4140 tttttacaag aaagacaccg gcgcagattg aggatttctt tggagatctt gacagtcacg 4200 taccgatgga tgtcttggag ctggacatat caaagtatga caaatctcag aatgaattcc 4260 actgtgcagt agaatacgag atctggagaa gattgggttt tgaagacttc ttgggagaag 4320 tttggaagca agggcatagg aaaaccaccc tcaaggatta taccgcaggt atcaagactt 4380 gtatttggta tcaaagaaag agcggggatg tcacgacgtt cattggaaat actgtgatca 4440 ttgctgcatg tttggcctcg atgcttccga tggaaaagat aatcaaggga gccttttgcg 4500 gtgacgatag tctgctgtac ttcccaaagg ggtgcgagtt tccggatgtg caacattccg 4560 cgaatcttat gtggaatttt gaggcaaaac tgtttaaaaa acagtatgga tacttttgcg 4620 gaaggtatgt aatacatcac gacagaggat gcattgtgta ttacgatccc ctgaagttga 4680 tctcgaaact tggtgctaaa cacatcaagg attgggaaca cttggaggag ttcagaaggt 4740 ctctttgtga tgttgctgtt tcgttgaaca attgtgcgta ttacacacag ttggacgacg 4800 ctgtatggga ggttcataag accgcccctc caggttcgtt tgtttataaa agtctggtga 4860 agtatttgtc tgataaagtt ctttttagaa gtttgtttat agatggctct agttgttaaa 4920 gggaaagtga acatcaatga gtttatcgac ctgacaaaaa tggaaaagat cttaccgtcg 4980 atgtttactc cagtgaagag tgtcatgtgt tccaaagttg ataaagttat ggttcatgag 5040 aatgaatcat tgtcagaggt gaaccttctt aaaggagtta agcttattga tagtggatac 5100 gtttgtttag ccggtctggt cgtcacgggc gaatggaact tgcctgacaa ttgcagagga 5160 ggtgtgagcg tgtgtctggt ggacaaaagg atggaaagag cagacgaagc cactctcgga 5220 tcctattaca cagcagctgc aaagaaaaga ttccagttca aggtcgttcc caattatgct 5280 ataaccaccc aggacgcaat gaaaaacgtc tggcaagtgt tagtcaatat tagaaatgtg 5340 aagatgtctg cgggtttctg tccgctttct ctggagtttg tgtcggtatg tatcgtttat 5400 agaaataata taaaattagg tttgagagag aaaattacaa acgtgagaga cggaggtccc 5460 atggaactta cagaggaagt tgttgatgag ttcatggaag atgtacctat gtcaattagg 5520 cttgcaaagt ttcgatctcg aaccggaaaa aagagtgatg tccgtaaagg gaaaaatagt 5580 agtagtgatc ggtcgcagcc gaacaagaac tatggaaatg ttaaagattt tggaggaatg 5640 agttttaaaa agaataattt aatcgatgat gatttggaga cttctgtcgc cgaatcggat 5700 tcgttttaaa tatgtcttac aatattacta ctccatctca gttcgtgttc ttgtcatcag 5760 cgtgggctga cccgatagag ttaattaatt tatgtactaa tgccttaggt aatcagttcc 5820 aaacacaaca agctcgaact gtcgttcaaa gacagttcag tgaggtgtgg aaaccttcac 5880 cacaagtaac tgttaggttc cccgatagtg attttaaggt gtataggtac aatgcggtat 5940 tagacccgct agtcactgca ctgttaggtg cttttgacac tagaaataga ataatagaag 6000 ttgaaaatca agcaaacccc acgactgccg aaacgttaga tgctactcgt agagtagacg 6060 acgcaacggt ggccataagg agcgcgataa ataatttaat agtagaattg atcagaggaa 6120 ctggatctta taatcggagc tctttcgaga gctcttctgg tttggtttgg acctctggtc 6180 ctgcaacttg aggtagtcaa gttgcataat aaataacgga ttgtgtccgt aatcacacgt 6240 ggtgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 atcgcgcggg tcaaatgtat atggttcata tacatccgca ggcacgtaat aaagcgaggg 6360 gttcgaatcc ccccgttacc cccggtaggg gccca 6395 //