ID HE818410; SV 1; linear; genomic RNA; STD; VRL; 6396 BP. XX AC HE818410; XX DT 21-MAY-2012 (Rel. 112, Created) DT 21-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Tobacco mosaic virus isolate Chengjiang, complete genome XX KW complete genome. XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6396 RA Yang J.; RT ; RL Submitted (13-MAY-2012) to the INSDC. RL Yang J., Tobacco Research Institute of Chinese Academy of Agriculture, RL Tobacco disease protection, 11# Keyuan 4 Road, Laoshan Distinc, Qingdao RL 266101, Shandong Province, CHINA. XX RN [2] RA Yang J.; RT "The population variation of tobacco mosaic virus in tobacco of China"; RL Unpublished. XX DR MD5; 8e08816d6082bf0e01d7b26d32daa16e. XX FH Key Location/Qualifiers FH FT source 1..6396 FT /organism="Tobacco mosaic virus" FT /host="Nicotiana tabacum" FT /mol_type="genomic RNA" FT /country="China:Chengjiang,Kunming city, Yunnan province" FT /collected_by="Jinguang Yang" FT /db_xref="taxon:12242" FT CDS 69..3419 FT /gene="relicase" FT /product="replication protein" FT /db_xref="GOA:I2HAN1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I2HAN1" FT /protein_id="CCH64000.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ FT KEAFDRYAEIPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVNSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLKNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQ" FT CDS 4903..5709 FT /gene="mp" FT /product="movement protein" FT /db_xref="GOA:I2HAN2" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I2HAN2" FT /protein_id="CCH64001.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK FT GKISSSDWSVPNKNYRNVKDFGGMSFKKNNLIDDDSETTVAESDSF" FT CDS 5712..6191 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:I2HB00" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:I2HB00" FT /protein_id="CCH64002.1" FT /translation="MSYSITTPSQFVYLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNRSSFESSSGLVWTSGPAT" XX SQ Sequence 6396 BP; 1863 A; 1212 C; 1541 G; 1780 T; 0 other; gtatttttac aacaattacc aacaacaaca aacaacaaac aacattacaa ttactattta 60 caattacaat ggcatacaca cagacagcta ccacatcagc tttgctggac actgtccgag 120 gaaataactc cttggtcaat gatctagcaa agcgtcgtct ttacgacaca gcggtcgaag 180 agtttaacgc tcgtgaccgc aggcccaaag tgaacttttc aaaagtaata agcgaggagc 240 agacgcttat tgctacccgg gcatatccag aattccaaat tacattttac aacacgcaaa 300 atgccgtgca ttcgcttgca ggtggattgc gatctttaga actggaatat ctgatgatgc 360 aaattcccta cggatcattg acttatgaca taggcgggaa ttttgcatcg catctgttca 420 agggacgagc atacgtacac tgctgcatgc ccaacctgga cgttcgagac atcatgcggc 480 atgaaggcca gaaagacagt attgaactat acctttctag gctagagaga ggggggaaaa 540 cagtccctaa cttccaaaag gaagcatttg acagatacgc agaaattcct gaggacgctg 600 tctgtcataa tactttccag acatgtgaac atcagccgat gcagcaatca ggcagagtgt 660 acgccattgc gctacacagc atatatgaca tacccgctga tgagttcggg gcggcactct 720 tgaggaaaaa cgtccatacg tgctatgccg ctttccactt ctctgagaac ctgcttcttg 780 aggattcata cgtcaatttg gacgaaatca acgcgtgttt ttcgcgcgat ggagacaaat 840 tgaccttttc ttttgcatca gagagtactc ttaattactg tcatagttat tctaatattc 900 ttaagtatgt gtgcaaaact tacttccctg cctctaatag agaggtttac atgaaggagt 960 ttttagtcac cagggttaac acctggtttt gtaagttttc tagaatagat acttttcttt 1020 tgtacaaagg tgtggcccat aaaagtgtaa atagtgagca gttttatact gcaatggaag 1080 acgcatggca ttacaaaaag actcttgcaa tgtgcaacag tgagagaatt ctccttgagg 1140 attcatcatc agttaattac tggtttccca aaatgaggga tatggtcatc gtaccattat 1200 tcgacatttc tttggagact agtaagagga cgcgcaagga agtcttagtg tccaaggatt 1260 tcgtgtttac agtgctcaac cacattcgaa cataccaggc gaaagctctt acatacgcaa 1320 atgttttgtc cttcgtcgaa tcgattcgat cgagggtaat cattaacggt gtaacagcga 1380 ggtccgaatg ggatgtggac aaatctttgt tgcaatcctt gtccatgacg ttttacctgc 1440 atactaagct tgccgttcta aaggatgact tactgattag caagtttagt ctcggttcaa 1500 aaacggtgtg tcagcatgtg tgggatgaga tttcgctggc ttttgggaac gcatttccct 1560 ccgtaaaaga gaggctcttg aacaggaaac ttatcagagt ggcaggtgac gcattagaga 1620 tcagggtgcc tgatctatat gtgactttcc acgacagatt agtgactgag tacaaggcct 1680 ctgtggacat gcctgcgctt gacattagga agaagatgga agaaacggaa gtgatgtaca 1740 atgctctttc ggagttatcg gtgttaaggg agtctgacaa attcgatgtt gatgtttttt 1800 cccagatgtg ccaatctttg gaagttgacc caatgacagc agcgaaggtt atagtcgcgg 1860 tcatgagcaa tgagagcggt ctgactctca catttgaacg acctacagag gcgaatgttg 1920 cgctagcttt gcaagatcaa gagaaggctt cagaaggtgc tttggtagtt acctcgaggg 1980 aagttgaaga accgtccatg aagggttcga tggccagagg agagttacaa ttagctggtc 2040 ttgctggaga tcatccggag tcgtcttatt ctaggaacga ggagatagag tctttagagc 2100 agtttcatat ggcaacggca gattcgttaa ttcgtaagca gatgagctcg attgtgtaca 2160 caggtccgat taaagttcag caaatgaaaa actttatcga tagcctggta gcatcactat 2220 ctgctgcggt gtcgaatctc gtcaagatcc tcaaagatac agctgctatt gaccttgaaa 2280 cccgtcaaaa gtttggagtc ttggatgttg catctaggaa gtggttgatc aaaccaacgg 2340 ccaagagtca tgcatggggt gttgtcgaaa cccacgcgag gaagtatcat gtggcgcttt 2400 tggaatatga tgagcagggt gtggtaacat gcgatgattg gaggagagta gctgtcagct 2460 ctgagtctgt tgtttattcc gatatggcga aactcagaac tctgcgccga ctgcttaaaa 2520 acggtgaacc gcacgtcagt agcgcaaagg ttgttcttgt ggacggagtt ccgggctgtg 2580 gaaaaaccaa agaaattctt tccagggtta attttgatga agatctaatt ctagtacctg 2640 ggaagcaagc tgcggaaatg atcagaagac gtgcgaattc ctcagggatt attgtggcca 2700 cgaaggacaa cgttaaaacc gttgattctt tcatgatgaa ttttggaaaa agcacacgct 2760 gtcagttcaa gagattattc attgatgaag ggttgatgtt gcatactggt tgtgttaatt 2820 ttcttgtggc gatgtcattg tgcgaaattg catatgttta cggagacaca cagcagattc 2880 catacatcaa tagagtttca ggattcccgt accccgccca ttttgccaaa ttggaagttg 2940 acgaggttga gacacgcaga actactctcc gttgtccagc tgatgtcaca cattatctga 3000 acaggagata tgagggcttt gtcatgagta cttcttcggt taaaaagtct gtttcgcagg 3060 agatggttgg cggagccgct gtgatcaatc cgatctcaaa acccctgcat ggcaagatct 3120 tgacgtttac ccaatcggat aaagaagctc tgctttcaag agggtattca gatgttcaca 3180 ctgtgcatga agtgcaaggc gagacatact ctgatgtttc actagttagg ttaaccccta 3240 caccagtctc catcattgca ggagacagcc cacatgtttt ggttgcattg tcgaggcaca 3300 cctgttcgct caagtactac actgttgtta tggatccttt agttagtatt attagagatc 3360 tagagaaact tagctcgtac ttgttagata tgtataaggt cgatgcagga acacaatagc 3420 aattacagat tgactcggtg ttcaaaggtt ccaatctttt tgtggcagcg ccaaagactg 3480 gtgatatttc tgatatgcag ttttactatg ataagtgtct cccaggtaac agcaccatga 3540 tgaataattt tgatgctgtt accatgaggt tgactgacat ttcattgaat gtcaaagatt 3600 gcatattgga tatgtccaag tctgttgctg cgcctaagga tcagatcaaa ccactaatac 3660 ctatggtacg aacggcggca gaaatgccac gccagactgg actattggaa aatttagtgg 3720 cgatgattaa aaggaacttt aacgcacccg agttgtctgg catcattgat attgaaaaca 3780 ctgcatcttt agttgtagat aagtttttcg atagttattt gcttaaggaa aaaagaaaac 3840 caaataaaaa tgtttctttg tttagtagag agtctctcaa tagatggtta gaaaagcaag 3900 aacaggtaac aataggccag ctcgcagatt ttgattttgt ggatttgcca gcagttgatc 3960 agtatagaca catgatcaaa gcacaaccca agcaaaaatt ggacacttca atccaaacgg 4020 agtacccggc tttgcagacg attgtgtacc attcaaaaaa gatcaatgca atatttggcc 4080 cgttgtttag tgagcttact aggcaattac tggacagtgt tgattcgagc agatttttgt 4140 ttttcacaag aaagacacca gcgcagattg aggatttctt cggagatctc gacagtcatg 4200 tgccgatgga tgtcttggag ctggatatat caaaatacga caaatctcag aatgaattcc 4260 actgtgcagt agaatatgag atctggcgaa gattgggttt tgaagatttc ttgggagaag 4320 tttggaagca agggcataga aagaccaccc tcaaggatta taccgcaggt atcaaaactt 4380 gcatctggta tcaaagaaag agcggggacg tcacgacgtt cattggaaac actgtgatca 4440 ttgctgcatg tttggcctcg atgcttccga tggagaaaat aatcaaagga gccttttgtg 4500 gtgacgatag tctgctgtac ttcccaaagg gttgtgagtt tccggatgtg caacactccg 4560 cgaatcttat gtggaatttt gaagcaaaac tgtttaaaaa acagtatgga tacttttgcg 4620 gaaggtatgt aatacatcac gacagaggat gcattgtgta ttacgatccc ctaaagttga 4680 tctcaaaact tggtgctaaa cacatcaagg attgggaaca cttggaggag ttcagaaggt 4740 ctctttgtga tgttgctgtt tcgttgaaca attgtgcgta ttacacacag ttggacgacg 4800 ctgtatggga ggttcataag accgcccctc caggttcgtt tgtttataaa agtctggtga 4860 agtatttgtc tgataaagtt ctttttagaa gtttgtttat agatggctct agttgttaaa 4920 ggaaaagtga atatcaatga gtttatcgac ctgacaaaaa tggagaagat cttaccgtcg 4980 atgtttaccc ctgtaaagag tgtcatgtgt tccaaagttg ataaaataat ggttcatgag 5040 aatgagtcat tgtcagaggt aaaccttctt aaaggagtta agcttattga tagtggatac 5100 gtctgtttag ccggtttggt cgtcacgggc gagtggaact tgcctgacaa ttgcagagga 5160 ggtgtgagcg tgtgtctggt ggacaaaagg atggaaagag ccgacgaggc cactctcgga 5220 tcttactaca cagcagctgc aaagaaaaga tttcagttca aggtcgttcc caattatgct 5280 ataaccaccc aggacgcgat gaaaaacgtc tggcaagttt tagtcaatat tagaaatgta 5340 aagatgtcag cgggtttctg tccgctttct ctggagtttg tgtcggtgtg tatcgtttat 5400 agaaataata taaagttagg tttgagagag aaaattacaa acgtgagaga tggagggccc 5460 atggaactta cagaagaagt tgttgatgag ttcatggaag atgtccctat gtcaatcagg 5520 cttgcaaagt ttcgatctcg aaccggaaaa aagagtgatg tccgtaaagg gaaaattagt 5580 agtagtgatt ggtcagtgcc gaacaagaac tatagaaatg ttaaggattt tggaggaatg 5640 agttttaaaa agaataattt aatcgatgat gattcggaga ctactgtcgc cgaatcggat 5700 tcgttttaaa tatgtcttac agtatcacta ctccatctca gttcgtgtac ttgtcatcag 5760 cgtgggccga cccaatagaa ttaattaatt tatgtactaa tgccttagga aatcagttcc 5820 aaacacaaca agctcgaact gtcgttcaaa gacaattcag tgaggtgtgg aaaccttcac 5880 cacaagtaac tgttagattc cctgacagtg actttaaggt gtataggtac aatgcggtat 5940 tagacccgct agtcacagca ctgttaggtg catttgacac tagaaataga ataatagaag 6000 ttgaaaatca ggcgaacccc acgactgccg aaacgttaga cgctactcgt agagtagacg 6060 acgcgacggt ggccataagg agcgctataa ataatttagt agtagaattg atcagaggaa 6120 ctggatctta taatcggagc tctttcgaga gctcttctgg tttggtttgg acctctggtc 6180 ctgcaacttg aggtagtcaa gatgcataat aaataacgga ttgtgtccgt aatcacacgt 6240 ggtgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 atcgcgcggg tcaaatgtat atggttcata tacatccgca ggcacgtaat aaagcgaggg 6360 gttcgaatcc ccccgttaac cgccggtagg ggccca 6396 //