ID HE814064; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC HE814064; XX DT 08-JUL-2012 (Rel. 113, Created) DT 08-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE East African cassava mosaic virus Uganda segment DNA-A, isolate DE Chad-Ndokono-TD1-2008 complete sequence XX KW complete viral segment. XX OS East African cassava mosaic virus - Uganda OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2798 RA Lett J.M.; RT ; RL Submitted (07-MAY-2012) to the INSDC. RL Lett J.M., Pole de Protection des Plantes, CIRAD-BIOS-UMR PVBMT, 7 Chemin RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE. XX RN [2] RA Zinga I., Harimalala M., De Bruyn A., Hoareau M., Mandakombo N., RA Semballa S., Reynaud B., Lefeuvre P., Lett J.M.; RT "East African cassava mosaic virus-Uganda (EACMV-UG) and African cassava RT mosaic virus (ACMV) reported for the first time in Central African Republic RT and Chad"; RL Unpublished. XX DR MD5; 7369cdebb68d7bf702058039e6ff6c96. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic virus - Uganda" FT /segment="DNA-A" FT /strain="Uganda" FT /isolate="Chad-Ndokono-TD1-2008" FT /mol_type="genomic DNA" FT /country="Chad:South" FT /lat_lon="9.17 N 18.15 E" FT /isolation_source="Manihot esculenta" FT /collection_date="2008" FT /db_xref="taxon:1188991" FT CDS 172..528 FT /gene="AV2 protein" FT /product="AV2" FT /db_xref="GOA:I7KLH6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I7KLH6" FT /protein_id="CCH63371.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT CDS 332..1105 FT /gene="AV1" FT /product="coat protein (CP)" FT /db_xref="GOA:I7JBW6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I7JBW6" FT /protein_id="CCH63372.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102..1506) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:I7KID8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7KID8" FT /protein_id="CCH63373.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1247..1654) FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:I7KID5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I7KID5" FT /protein_id="CCH63374.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAIRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1563..2642) FT /gene="AC1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:I7KLJ0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7KLJ0" FT /protein_id="CCH63375.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR FT VCKELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYNEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGHQT" FT CDS complement(2252..2485) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7JVP1" FT /protein_id="CCH63376.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRVLNHR FT PMSKLTLKREGNFLTLDFSKSMPEVQGGKASI" XX SQ Sequence 2798 BP; 733 A; 549 C; 731 G; 785 T; 0 other; accggatggc cgcgcccgaa aaagcagggg gaccccacaa tgaccgcgcc cgtgaaagaa 60 agtggtccct gcgcacttgt tttggtcggc cagtcatatt cacgcgtgaa agtctagata 120 tttgttgttt gtctttatag acttcgtcgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa 240 tacctgttac atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg 300 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaggag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gaatgtatcg aagcccagat gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ctggatggat gaaaatatta agaagcagaa 720 tcacactaat aatgtgatgt tttacctgct tagggataga aggccgtatg gcaatgcgcc 780 ccaagacttt gggcagatat ttaacatgtt tgataatgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga atcatcacgt 960 gacatataat catcaggagg cagggaagta tgagaatcac acagagaatg cgttgttatt 1020 gtatatggca tgtacacatg cctcgaatcc tgtgtatgct actctgaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaag gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1200 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg aagttgagaa aacacttgtg 1320 aatccccaat gccttccgaa ggttgtggtt gaaccgtatc tggagtgtga tgatgtcgtg 1380 gttcatgttc cctggcctct tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat 1440 gtcccaggta aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1500 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg aggtctaccc 1560 gcctacgtct gatggccctg gtcttcgctg tgcggtgttg gactttgatg ggcactagag 1620 aacaatggct cgtggagggt gatgaaggtg gcattcttta aagcccaggc tttaagggat 1680 tggttctttt cctcgtccag aaactcgtta tatgaggatg ttggtcctgg attgcagagg 1740 aagatagtgg gaatgccgcc tttaatttga attggcttcc cgtattttgt attactttgc 1800 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg gtcgacgtca 1860 tcaatgacgt tgtaccatgc gtcgtttgaa tataccttgg gagacagatc caggtgtcca 1920 caaagataat tatggggtcc cagtgaacga gcccacattg ttttgccggt tcggctatca 1980 ccttctagaa caatactgat aggtctccat ggccgcgcag cgggactgca tatattttcg 2040 gatacccata cctctatgtc ttctgggact tgtgtaaaag atgatgataa gaacggacta 2100 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat gttatggaac 2160 tgtaaaaaaa aggactttgg atctttttct ttaataattt gaagagcctc tgatttagac 2220 gacgcattca acgcgtctgc atatacctga gctaaatgct ggccttcccc ccttgcactt 2280 ctggcatcga cttggaaaag tccagcgtca agaaattccc ctcccttttc aatgtaagct 2340 ttgacatcgg acgatgattt agcaccctga atgttcggat ggaaatgtgt tgatcgggat 2400 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc gaattggatg 2460 agaacatgga gatgaggcac cccatcctga tgtagttctt tgcaaaccct aatgaatttg 2520 atattcgtcg ggtacgaaag ggcttgtaat tgggaaaggg cctcttcttt ggttaatgag 2580 catcggggat aggttatgaa ataatttttg gcatttattt gaaaacgacc ggctcttggc 2640 atattggctg tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg 2700 gggcaatata tatgatgtcc cccaatggca tatgtgtaaa taggtagact tccattcaaa 2760 atttgaattc cgaatatggc ggccatccga ttaatatt 2798 //