Dbfetch
ID HE806441; SV 1; circular; genomic DNA; STD; VRL; 2587 BP. XX AC HE806441; XX DT 26-OCT-2012 (Rel. 114, Created) DT 26-SEP-2014 (Rel. 122, Last updated, Version 2) XX DE Tomato yellow distortion leaf virus segment DNA-B isolate 03B_CLB1 complete DE sequence XX KW complete viral segment. XX OS Tomato yellow distortion leaf virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2587 RA Jeske H.; RT ; RL Submitted (02-MAY-2012) to the INSDC. RL Molecular biology and virology of plants, University of Stuttgart, RL Pfaffenwaldring 57, Stuttgart, D-70550, GERMANY. XX RN [2] RX DOI; 10.1007/s11262-014-1090-8. RX PUBMED; 24943118. RA Jeske H., Kober S., Schafer B., Strohmeier S.; RT "Circomics of Cuban geminiviruses reveals the first alpha-satellite DNA in RT the Caribbean"; RL Virus Genes 49(2):312-324(2014). XX DR MD5; 379050591baca492e145c3cd1df3087b. XX FH Key Location/Qualifiers FH FT source 1..2587 FT /organism="Tomato yellow distortion leaf virus" FT /segment="DNA-B" FT /host="Sida spp." FT /isolate="03B_ClB1" FT /mol_type="genomic DNA" FT /country="Cuba:Trinidad" FT /collection_date="Aug-2007" FT /db_xref="taxon:564944" FT CDS 392..1162 FT /transl_table=1 FT /gene="BV1" FT /product="NSP" FT /note="nuclear shuttle protein" FT /db_xref="GOA:K4Q760" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:K4Q760" FT /protein_id="CCH63319.1" FT /translation="MYPLRNKRGSYSTRRRFYPRNSVFKGTTSSKRHDGRRRSVNTGKS FT NDEPKMSAQRIHENQYGPDFAMAHNSAISTYISYPCLGKTEPNRSRSYIKLKRLTFKGT FT VKIERVQSDLNMDGSIPKVEGVFSLVLVVDRKPHLGPSGGLHTFDELFGARIHSHGNLS FT VTPDLKDRYYIRHVCKRVLSVEKDTLMVDVEGSITLSNRRFNCWATFKDLDRDSCNGVY FT SNISKNALLVYYCWMSDTPSKASTFVSYDLDYVG" FT CDS complement(1232..2110) FT /transl_table=1 FT /gene="BC1" FT /product="MP" FT /note="movement protein" FT /db_xref="GOA:K4Q6L1" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:K4Q6L1" FT /protein_id="CCH63320.1" FT /translation="MESQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTAR FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTDKDVDFSHVDYGKWERKPIRCLSMSRIGMRGPIEIRPGESWASRSTIGTGQSAAD FT SEVENELHPYRHLNRLGTSVLDPGESASIVGAQRAESNITMSMGQLNELVRTTVQQCIN FT SNCEASRPKTL" XX SQ Sequence 2587 BP; 651 A; 553 C; 607 G; 776 T; 0 other; accggatggc cgcgcgctgg agtcctttcc gtacacttcc agacgcgctc ctcccctggt 60 gccgcactct cacgcgcgct cccattggtg ttggaaagcc acgcaccact atgtcagtcc 120 tttaattcaa attaaaggat tgtgctttcg tcgcgcgata tgctttacct tttgaattat 180 tgtctcgcga cgaattggac tgggccgttg tacttggtga tggacgtggc tagatttgga 240 ccgtgctgct gagtctattt gcatctactg ttgaaccact taagtatata ttggattttg 300 ttgatggatt aagttgtata tactcagcag acgaccacgt ttatattgtt atctgctaat 360 ttgtgtgtct atccattatt attatctgat aatgtatcct ctgaggaata aacgtgggtc 420 atactctact cgacgtcgtt tttatccacg taattctgtg tttaagggta caacctcttc 480 gaagagacat gacgggagac gtcgaagcgt caatacgggc aagtccaatg acgagcccaa 540 gatgtcagcc caacgcatac atgagaatca gtatgggcct gattttgcaa tggcccataa 600 ttcagctatc tcgacttata tcagctatcc ctgtctaggg aagacagaac cgaaccggag 660 caggtcatat atcaagttga aacggctaac gttcaaaggg actgtgaaga ttgaacgtgt 720 tcaatcggat ttgaacatgg acggttcgat cccgaaggtc gaaggagtct tttccctcgt 780 gcttgttgtg gatcgcaaac cccacttggg tccctctgga ggtttgcata cgtttgacga 840 gctattcggt gcaaggatac acagtcatgg aaatctcagc gtaacccctg atttgaagga 900 tcgttattac atacgccacg tgtgcaaacg tgtactgtct gtcgagaagg atacgctgat 960 ggtagacgtg gaaggatcca tcaccctctc taacaggcgt tttaattgtt gggccacgtt 1020 taaggatctt gatcgtgact catgcaatgg tgtttattct aacatatcca agaacgccct 1080 gttagtttat tactgctgga tgtctgatac tccttccaag gcatccacat ttgtatctta 1140 tgaccttgat tatgttggat gattaatgaa acatttattt tgattagcca aatttgaaca 1200 acttaaatgt ggataatgga tacaatattt attataaagt tttgggccta gaagcctcgc 1260 agttactatt gatacattgt tgaaccgttg tcctaactag ttcgttcaac tggcccattg 1320 acattgtgat attggactcg gctctctggg ctcccacaat ggacgcagac tctcctgggt 1380 ctagaacact ggtccccagc ctgttcaggt gcctgtatgg gtggagttcg ttctccacct 1440 ctgaatccgc agctgactgg cctgttccta tagtactcct ggaagcccat gactcaccag 1500 gcctgatctc tattgggcct ctcattccaa tcctggacat ggacaggcat ctaatgggct 1560 tcctctccca tttaccatag tcgacatgag aaaagtccac atctttgtcg gtgaactgtt 1620 tggacaggat cttgactgtc ggagctctga atggaatgtc gactgagtgt ttcgccgtcg 1680 ataatttcag cttccccttg aatttggcga agtgggtcct ctgatgaaca ttcgtatcgc 1740 aaactctgta atagagtttc catggaattg ggtctttgag cgagaaaaag gaagctgaaa 1800 agtagtggag atctatgttg catctgatcg gaaatgtcca tgacgcctgt aatgattcgt 1860 tgtccgtcat cctcttgtcg tggatctcca caattaccga cccggtggcg ttaatcggca 1920 cttgttgtct gtactctatg acgcagtggt cgatcttcat gcagctacga ctaagtctag 1980 ctgtcaattg agacgccgtc gacggaaatt gcagtattat ctcagttagg tcatgggaaa 2040 gctgatactc gtcccggtgt gactctatgt aattgaaagc gttcggagga ttaactaact 2100 gagattccat atgaagaaga aaggccgcgc agcggaatcg tcttaagaaa atctgactgg 2160 ttatgaaaaa tctgggattt ttgttagaac aagagaagaa gctctttgag gaagacgata 2220 atggcgactc agttctgggt ttattctata tgctgaacgg tggtctgtgg aactattgag 2280 ctcaatttgt tgggcatgaa actattttaa gtatttcagc caacgattca ctaaattttg 2340 ttggtctaac tgtttatgag aagctggata tgctgaggat taaatgggta tgaacttgtt 2400 tatatagaaa cccagaactt gttcagtggc atttttgtaa taagaatggg tactccaatt 2460 ggagtctcca attgagcctc gctcaaactt gcgctatgaa ttggagactg gagtaactta 2520 tatacaagaa ggctctatag aactctcaat ctcctccgca cacgtggcgg ccatccgata 2580 taatatt 2587 //