ID HE806436; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC HE806436; XX DT 07-JAN-2013 (Rel. 115, Created) DT 21-FEB-2013 (Rel. 115, Last updated, Version 2) XX DE Chilli leaf curl virus complete genome, isolate T-35 XX KW complete genome. XX OS Chilli leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2759 RA Akhtar S.; RT ; RL Submitted (08-MAY-2012) to the INSDC. RL Akhtar S., College of Agricultural and Marine, Sciences, Sultan Qaboos RL University, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, RL OMAN. XX RN [2] RA Khan A.J., Al-Zaidi A.M., Akhtar S.; RT "Molecular characterization and infectivity analysis of Chilli leaf curl RT virus from Oman"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Chilli leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="T-35" FT /mol_type="genomic DNA" FT /country="Oman:Thumrait" FT /isolation_source="leaf" FT /collected_by="Abdul Rehman Mohammed Obeid Al-Matroushi" FT /collection_date="2011" FT /db_xref="taxon:172278" FT CDS 150..515 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DGX7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGX7" FT /protein_id="CCH63295.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES FT EAQDVQDVQKPRCSEGM" FT CDS 310..1080 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H2DH02" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DH02" FT /protein_id="CCH63296.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1077..1487) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="UniProtKB/TrEMBL:L0P112" FT /protein_id="CCH63297.1" FT /translation="MDSRHRGTPSLLQLKQENGVFIWEITNPLYFKITEHHNKPFLRSQ FT DIITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISI FT NNVNRAVDHVLWNVLDHVVYVNQSYSIKYNLY" FT CDS complement(1222..1632) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="UniProtKB/TrEMBL:L0P1B4" FT /protein_id="CCH63298.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTPQGNPITAAAQAGEWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQS FT QPEESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT CDS complement(1535..2614) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="UniProtKB/TrEMBL:L0P115" FT /protein_id="CCH63299.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFLEFSQIDGRSARGGCQSANDAYAEAINSVSKAAALNILREKAPKDYVLQFHNL FT NANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPLYS FT GSNQSAAQAGQEGDQASSR" FT CDS complement(2170..2457) FT /gene="C4" FT /product="C4 protein" FT /db_xref="UniProtKB/TrEMBL:L0P1N5" FT /protein_id="CCH63300.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETFWSFPRSMADQLEEVANLPTTHMPRQSIQCPRLRPSIF" XX SQ Sequence 2759 BP; 758 A; 556 C; 634 G; 811 T; 0 other; accggatggc cgcgattttt tttttccgtg gaccccgcga tgcacgtgct gacaaataca 60 tgtggaccaa ttaaaaacgt ccctcaaagc ttaattgttt cgtggtcccc tctataaact 120 tgggctccaa gtagtgggtt tttatcacaa tgtgggatcc tttactaaat gagtttcccg 180 aaagtgttca tgggtttagg tgtatgttag cagtgaaata tctgcaatta gtagaaaatt 240 catattcgcc agacacatta gggtacgatt taatcaggga tttaatttca gttattaggg 300 ctagaaatta tgtcgaagcg accagcagat ataatcattt ccacgcccgc ctcgaaggta 360 cgccgtcgtc tcaacttcga cagcccatat gccagccgtg ctgctgcccc cattgtccgc 420 gtcacaaagg caaaggcatg ggccaacagg cccatgaatc ggaagcccag gatgtacagg 480 atgtacagaa gcccagatgt tccgagggga tgtgaaggcc catgtaaggt ccagtctttt 540 gagtctagac acgatgtagt tcatataggg aaggttatgt gtattagtga tgttacccgt 600 ggtaccgggt taacccatag agtaggtaag cgtttctgtg ttaagtctgt ttatgtctta 660 gggaagatat ggatggatga gaatatcaag actaagaatc acacgaatag tgtgatgttc 720 ttccttgtcc gtgatcgtcg acctacaggt gcaccacaag attttggaga tgtgtttaat 780 atgttcgaca acgaacctag cactgccact gtgaagaata tgcatagaga tcgttatcag 840 gtcttgagga aatggcacgc aacggttact ggtggacagt acgcgtcgaa ggaacaggca 900 ttagttaaga agttcgttag ggttaacaat tatgttgtgt ataaccagca ggaagctgga 960 aaatatgaga atcatagtga gaatgctctt atgttgtata tggcgtgtac tcacgcctct 1020 aaccctgtgt atgctacatt gaagatacgt atctatttct atgattcagt atcgaattaa 1080 taaagattat attttattga atatgattgg tttacatata caacgtgatc taatacattc 1140 cataatacat gatcaactgc tctatttaca ttgttaatac taattacagc aaaattatta 1200 agcactttca atacttgggt tttaaatacc cttaagaaat gaccagtctg aggctgtaag 1260 gtcgtccaga ttcggtaggt tagaaaacat ttgtgcatcc ccaacgcttt cctcaggttg 1320 tgattgaacc gtatctgcac tgtgatgatg tcttggcttc tcaggaatgg cttgttgtgg 1380 tgctctgtta tcttgaaata caggggattt gttatctccc agataaacac gccattctcc 1440 tgcttgagct gcagcagtga tggggttccc ctgtggcgtg aatccatagc cgtggcaacg 1500 taatgcgatg aaatatgaac agccgcaatc gaggtcaacg cgacgacgcc tggtcccctt 1560 cttggccagc ctgtgctgca ctttgattgg aacctgagta gagtgggcct gtgagggtga 1620 tgaaggtcgc attctttaaa gcccaatgtt tgagtgcgga attcttttct tcatccaaga 1680 actctttata gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt 1740 taatttgaac tggctttccg tattttgtat ttgattgcca gtccctttgg gcccccatga 1800 attctttaaa gtgttttaga taatgcggat cgacgtcatc aatgacgtta tacgatgcat 1860 cattgctgta cactttaggg ctaaggtcta agtgaccaca taggtagtta tgtggaccca 1920 acgacctagc ccacatggtc ttcccggttc gactatcacc ctcaatcaca atactcatgg 1980 gtctcaaagg ccgcgcagcg gcacccacca cgttcacaga agcccattcc tcaagttcat 2040 caggaacttg atcaaaagaa gaagaaagaa aaggagaaac ataaacatcc ggtggaggcg 2100 taaaaatcct atctaaatta gcatttaaat tatgaaattg taaaacataa tctttgggag 2160 ctttctccct taaaatattg agggccgcag ccttggacac tgaattgatt gcctcggcat 2220 atgcgtcgtt ggcagattgg caacctcctc tagctgatct gccatcgatc tgggaaaact 2280 ccagaaagtc tccgtctttc tccacatagg ctttgacatc tgaagagctc ttagctctct 2340 gaatgttcgg atggaaatgt gctgaccggg ttggggaaat gaggtcgaag aatctgttgt 2400 ttgtgcattg atatttgcct tcgaattgga cgagcacgtg tagatgaggt tccccattct 2460 cgtgcaattc tctgcaaacc ctaataaata atttatttac tggggtttct aagttttgta 2520 attgggaaag ggcctcttct ttagtaagag agcagttagg atatgttagg aaataatttt 2580 tagcatttat attgaatctc cccgctctag gcatattggt ggacactcaa acttactatg 2640 caatcggtgg aatgggggac aatttatatg tgtccaccaa tggcaaattg gtaatcgttg 2700 ttacattaaa aaaatttaat attcaaattc cgacaaaagc ggccatccgc attaatatt 2759 //