ID   HE806435; SV 1; circular; genomic DNA; STD; VRL; 2759 BP.
XX
AC   HE806435;
XX
DT   07-JAN-2013 (Rel. 115, Created)
DT   21-FEB-2013 (Rel. 115, Last updated, Version 2)
XX
DE   Chilli leaf curl virus complete genome, isolate T-24
XX
KW   complete genome.
XX
OS   Chilli leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2759
RA   Akhtar S.;
RT   ;
RL   Submitted (08-MAY-2012) to the INSDC.
RL   Akhtar S., College of Agricultural and Marine, Sciences, Sultan Qaboos
RL   University, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123,
RL   OMAN.
XX
RN   [2]
RA   Khan A.J., Al-Zaidi A.M., Akhtar S.;
RT   "Molecular characterization and infectivity analysis of Chilli leaf curl
RT   virus from Oman";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2759
FT                   /organism="Chilli leaf curl virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="T-24"
FT                   /mol_type="genomic DNA"
FT                   /country="Oman:Thumrait"
FT                   /isolation_source="leaf"
FT                   /collected_by="Abdul Rehman Mohammed Obeid Al-Matroushi"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:172278"
FT   CDS             150..515
FT                   /gene="V2"
FT                   /product="pre-coat protein"
FT                   /db_xref="GOA:H2DGX7"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:H2DGX7"
FT                   /protein_id="CCH63289.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL
FT                   ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES
FT                   EAQDVQDVQKPRCSEGM"
FT   CDS             310..1080
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:H2DH02"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H2DH02"
FT                   /protein_id="CCH63290.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP
FT                   STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   SENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT   CDS             complement(1077..1481)
FT                   /gene="C3"
FT                   /gene_synonym="REn"
FT                   /product="replication enhancement protein"
FT                   /db_xref="GOA:H2DGV0"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H2DGV0"
FT                   /protein_id="CCH63291.1"
FT                   /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDI
FT                   ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN
FT                   VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY"
FT   CDS             complement(1222..1626)
FT                   /gene="C2"
FT                   /gene_synonym="TrAP"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:H2DH10"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2DH10"
FT                   /protein_id="CCH63292.1"
FT                   /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT                   CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP
FT                   EESVGDAQMFSNLPNLDDLTASDWSFLKGI"
FT   CDS             complement(1529..2614)
FT                   /gene="C1"
FT                   /gene_synonym="Rep"
FT                   /product="replication initiation protein"
FT                   /db_xref="UniProtKB/TrEMBL:L0P1A5"
FT                   /protein_id="CCH63293.1"
FT                   /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR
FT                   VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV
FT                   EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT                   NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL
FT                   YSGSNQSAAQAGQEGDQASSR"
FT   CDS             complement(2164..2457)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:H2DGV3"
FT                   /protein_id="CCH63294.1"
FT                   /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL
FT                   QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF"
XX
SQ   Sequence 2759 BP; 761 A; 554 C; 635 G; 809 T; 0 other;
     accggatggc cgcgattttt ttttaccgtg gaccccgcga tacacgtgct gacaaagaca        60
     tgtggaccaa ttaaaaacgt ccctcaaagc ttaattgttt cgtggtcccc tctataaact       120
     tgggctccaa gtagtgggtt tttatcacaa tgtgggatcc tttactaaat gagtttcccg       180
     aaagtgttca tgggtttagg tgtatgttag cagtgaaata tctgcaatta gtagaaaatt       240
     catattcgcc agacacatta gggtacgatt taatcaggga tttaatttca gttattaggg       300
     ctagaaatta tgtcgaagcg accagcagat ataatcattt ccacgcccgc ctcgaaggta       360
     cgccgtcgtc tcaacttcga cagcccatat gccagccgtg ctgctgcccc cattgtccgc       420
     gtcacaaagg caaaggcatg ggccaacagg cccatgaatc ggaagcccag gatgtacagg       480
     atgtacagaa gcccagatgt tccgagggga tgtgaaggcc catgtaaggt ccagtctttt       540
     gagtctagac acgatgtagt tcatataggg aaggttatgt gtattagtga tgttacccgt       600
     ggtaccgggt taacccatag agtaggtaag cgtttctgtg ttaagtctgt ttatgtctta       660
     gggaagatat ggatggatga gaatatcaag actaagaatc acacgaatag tgtgatgttc       720
     ttccttgtac gtgatcgtcg acctacaggt gcaccacaag attttggaga tgtgtttaat       780
     atgttcgaca acgaacctag cactgccact gtgaagaata tgcatagaga tcgttatcag       840
     gtcttgagga aatggcacgc gacggttact ggtggacagt acgcgtcgaa ggaacaggca       900
     ttagttaaga agttcgttag ggttaacaat tatgttgtgt ataaccagca ggaagctgga       960
     aaatatgaga atcatagtga gaatgctctg atgttgtata tggcgtgtac tcacgcctct      1020
     aaccctgtgt atgctacatt gaagatacgt atctatttct atgattcagt atcgaattaa      1080
     taaagattat attttattga atatgattgg tttacatata caacgtgatc taatacattc      1140
     cataatacat gatcaactgc tctatttaca ttgttaatac taattacagc aaaattatta      1200
     agcactttca atacttgggt tttaaatacc cttaagaaat gaccagtctg aggctgtaag      1260
     gtcgtccaga ttcggtaggt tagaaaacat ttgtgcatcc ccaacgcttt cctcaggttg      1320
     tgattgaacc gtatctgcac tgtgatgatg tcttggcttc tcaggaatgg cctgttgtgg      1380
     tgctctgtta tcttgaaata caggggattt gttatctccc agataaacac gccattctct      1440
     gcttgagctg cagtgatggg ttcccctgtg cgtgaatcca tagccgtggc aacgtaatgc      1500
     gatgaaatat gaacagccgc aatcgaggtc aacgcgacga cgcctggtcc ccttcttggc      1560
     cagcctgtgc tgcactttga ttggaacctg agtagagtgg gcctgtgagg gtgatgaagg      1620
     tcgcattctt taaagcccaa tgtttgagtg cggaattctt ttcttcatcc aagaactctt      1680
     tatagctgga attgggtcct ggattgcaga ggaagatagc gggaattcca cctttaattt      1740
     gaattggctt tccgtatttt gtatttgatt gccagtccct ttgggccccc atgaattctt      1800
     taaagtgttt tagataatgc gggtcgacgt catcaatgac gttatacgag gcatcattgc      1860
     tgtacacttt agggctaagg tctaagtgac cacataggta gttatgtgga cccaacgacc      1920
     tagcccacat ggtcttcccg gttcgactat caccctcaat cacaatactc atgggtctca      1980
     aaggccgcgc agcggcaccc accacgttca cagaagccca ttcctcaagt tcatcaggaa      2040
     cttgatcaaa agaagaagaa agaaaaggag aaacataaac atccggtgga ggcgtaaaaa      2100
     tcctatctaa attagcattt aaattatgaa attgtaaaac ataatctttg ggagctttct      2160
     cccttaaaat attgagggcc gcagccttgg accctgaatt gattgcctcg gcatatgcgt      2220
     cgttggcaga ttggcaacct cctctagctg atctgccatc gatctggaaa actccagagt      2280
     caatgaagtc tccgtctttc tccacatagg ctttgacatc tgaagagctc ttagctctct      2340
     gaatgttcgg atggaaatgt gctgaccggg ttggggaaat gaggtcgaag aatctgttgt      2400
     ttgtgcattg atatttgcct tcgaattgga cgagcacgtg tagatgaggt tccccattct      2460
     cgtgcaattc tctgcaaacc ctaataaata atttatttac tggggtttct aagttttgta      2520
     attgggaaag ggcctcttct ttagtaagag agcagttagg atatgttagg aaataatttt      2580
     tagcatttat attgaatctc cccgctctag gcatattggt ggacactcaa acttactatg      2640
     caatcggtgg aatgggggac aatttatatg tgtccaccaa tggcaaattg gtaattgttg      2700
     ttacattaaa aaaatttaaa attcaaattc caacaaaagc ggccatccgc attaatatt       2759
//