ID HE806432; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HE806432; XX DT 07-JAN-2013 (Rel. 115, Created) DT 07-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Chilli leaf curl virus complete genome, isolate T-19 XX KW complete genome. XX OS Chilli leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Akhtar S.; RT ; RL Submitted (08-MAY-2012) to the INSDC. RL Akhtar S., College of Agricultural and Marine, Sciences, Sultan Qaboos RL University, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, RL OMAN. XX RN [2] RA Khan A.J., Al-Zaidi A.M., Akhtar S.; RT "Molecular characterization and infectivity analysis of Chilli leaf curl RT virus from Oman"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Chilli leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="T-19" FT /mol_type="genomic DNA" FT /country="Oman:Salalah" FT /isolation_source="leaf" FT /collected_by="Abdul Rehman Mohammed Obeid Al-Matroushi" FT /collection_date="2011" FT /db_xref="taxon:172278" FT CDS 151..516 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="UniProtKB/TrEMBL:L0P2S8" FT /protein_id="CCH63271.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCSHCPRHKGKGMGQQAHES FT EAQDVQDVQKPRCSEGM" FT CDS 311..1081 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H2DH02" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DH02" FT /protein_id="CCH63272.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1078..1485) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="UniProtKB/TrEMBL:L0P172" FT /protein_id="CCH63273.1" FT /translation="MDSRTGEPHHCSSRQRNGVFIWEITNPLYFKITEHHNRPFLRSQD FT IITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISIN FT NVNRAVDHVLWNVLDHIVYVNQSYSIKYNLY" FT CDS complement(1223..1630) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="UniProtKB/TrEMBL:L0P0Z2" FT /protein_id="CCH63274.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTPSLQLTAEKWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQ FT PEESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT CDS complement(1533..2618) FT /gene="C1" FT /gene_synonym="Ren" FT /product="replication initiation protein" FT /db_xref="UniProtKB/TrEMBL:L0P1J7" FT /protein_id="CCH63275.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGD FT SRTEKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDQASSR" FT CDS complement(2168..2461) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGV3" FT /protein_id="CCH63276.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2763 BP; 759 A; 554 C; 636 G; 814 T; 0 other; acccggatgg ccgcgttttt tttttaccgt ggaccccgcg atgcacgtgc tgacaaatac 60 atgtggacca attaaaaacg tccctcaaag cttaattgtt tcgtggtccc ctctataaac 120 ttgggctcca agtagtgggt ttttatcaca atgtgggatc ctttactaaa tgagtttccc 180 gaaagtgttc atgggtttag gtgtatgtta gcagtgaaat atctgcaatt agtagaaaat 240 tcatattcgc cagacacatt agggtacgat ttaatcaggg atttaatttc agttattagg 300 gctagaaatt atgtcgaagc gaccagcaga tataatcatt tccacgcccg cctcgaaggt 360 acgccgtcgt ctcaacttcg acagcccata tgccagccgt gctgctgctc ccattgtccg 420 cgtcacaaag gcaaaggcat gggccaacag gcccatgaat cggaagccca ggatgtacag 480 gatgtacaga agcccagatg ttccgagggg atgtgaaggc ccatgtaagg tccagtcttt 540 tgagtctaga cacgatgtag ttcatatagg gaaggttatg tgtattagtg atgttacccg 600 tggtaccggg ttaacccata gagtaggtaa gcgtttctgt gttaagtctg tttatgtctt 660 agggaagata tggatggatg agaatatcaa gacaaagaat cacacgaata gtgtgatgtt 720 cttccttgtc cgtgatcgtc gacctacagg tgcaccacaa gattttggag atgtgtttaa 780 tatgttcgac aacgaaccta gcactgccac tgtgaagaat atgcatagag atcgttatca 840 ggtcttgagg aaatggcacg caacggttac tggtggacag tacgcgtcga aggaacaggc 900 attagttaag aagttcgtta gggttaacaa ttatgttgtg tataaccagc aggaagctgg 960 aaaatatgag aatcatagtg agaatgctct gatgttgtat atggcgtgta ctcacgcctc 1020 taaccctgtg tatgctacat tgaagatacg tatctatttc tatgattcag tatcgaatta 1080 ataaagatta tattttattg aatatgattg gtttacatat acaatgtgat ctaatacatt 1140 ccataataca tgatcaactg ctctatttac attgttaata ctaattacag caaaattatt 1200 aagcactttc aatacttggg ttttaaatac ccttaagaaa tgaccagtct gaggctgtaa 1260 ggtcgtccag attcggtagg ttagaaaaca tttgtgcatc cccaacgctt tcctcaggtt 1320 gtgattgaac cgtatctgca ctgtgatgat gtcttggctt ctcaggaatg gcctgttgtg 1380 gtgctctgtt atcttgaaat acaggggatt tgttatctcc cagataaaca cgccatttct 1440 ctgccgtgag ctgcagtgat ggggttcccc tgtgcgtgaa tccatagccg tggcaacgta 1500 atgcgatgaa atatgaacag ccgcaatcga ggtcaacgcg acgacgcctg gtccccttct 1560 tggccagcct gtgctgcact ttgattggaa cctgagtaga gtgggcctgt gagggtgatg 1620 aaggtcgcat tctttaaagc ccaatgtttg agtgcggaat tcttttcttc atccaagaac 1680 tctttatagc tggaattggg tcctggattg cagaggaaga tagcgggaat tccaccttta 1740 atttgaactg gctttccgta ttttgtattt gattgccagt ccctttgggc ccccatgaat 1800 tctttaaagt gttttagata atgcgggtcg acgtcatcaa tgacgttata cgaggcatca 1860 ttgctgtaca ctttagggct aaggtctaag tgaccacata gatagttatg tggacccaac 1920 gacctagccc acatggtctt ctcggttcga ctatcaccct caatcacaat actcatgggt 1980 cttaaaggcc gcgcagcggc acccaccacg ttcacagaag cccattcctc aagttcatca 2040 ggaacttgat caaaagaaga agaaagaaaa ggagaaacat aaacatccgg tggaggcgta 2100 aaaatcctat ctaaattagc atttaaatta tgaaattgta aaacataatc tttgggagct 2160 ttctccctta aaatattgag ggccgcagcc ttggaccctg aattgattgc ctcggcatat 2220 gcgtcgttgg cagattggca acctcctcta gctgatctgc catcgatctg gaaaactcca 2280 gagtcaatga agtctccgtc tttctccaca taggctttga catctgaaga gctcttagct 2340 ctctgaatgt tcggatggaa atgtgctgac cgggttgggg aaatgaggtc gaagaatctg 2400 ttgtttgtgc attgatattt gccttcgaat tggacgagca cgtgtagatg aggttcccca 2460 ttctcgtgca attctctgca aaccctaata aataatttat ttactggggt ttctaagttt 2520 tgtaattggg aaagggcctc ttctttagta agagagcagt taggatatgt taggaaataa 2580 tttttagcat ttatattgaa tctccccgct ctaggcatat tggtggacac tcaaacttac 2640 tatgcaatcg gtggaatggg ggacaattta tatgtgtcca ccaatggcaa attggtaatt 2700 gttgttacat ttaaaaaatt taaaattcaa attccgacaa aagcggccat ccgcattaat 2760 att 2763 //