ID   HE800524; SV 1; linear; genomic DNA; STD; VRL; 1764 BP.
XX
AC   HE800524;
XX
DT   29-OCT-2012 (Rel. 114, Created)
DT   29-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Cotton leaf curl Gezira virus C1, C2, C3 and C4 genes, isolate Pap-2
XX
KW   .
XX
OS   Cotton leaf curl Gezira virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1764
RA   Akhtar S.;
RT   ;
RL   Submitted (03-APR-2012) to the INSDC.
RL   Akhtar S., Sultan Qaboos University, College of Agricultural and Marine
RL   Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN.
XX
RN   [2]
RX   DOI; .1094/PDIS-05-12-0438-PDN.
RX   PUBMED; 30727467.
RA   Khan A.J., Akhtar S., Al-Shihi A.A., Al-Hinai F.M., Briddon R.W.;
RT   "Identification of Cotton leaf curl Gezira virus in Papaya in Oman";
RL   Plant Dis. 96(11):1704-1704(2012).
XX
DR   MD5; f8d3f1912cebd94d70385b54e5805aea.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1764
FT                   /organism="Cotton leaf curl Gezira virus"
FT                   /host="Carica papaya"
FT                   /isolate="Pap-2"
FT                   /mol_type="genomic DNA"
FT                   /country="Oman:Quriyat"
FT                   /isolation_source="host leaf"
FT                   /collected_by="Abdul Rehman Mohammed Obeid Al-Matroushi"
FT                   /db_xref="taxon:222459"
FT   CDS             complement(84..485)
FT                   /gene="C3"
FT                   /product="replication enhancement protein (REn)"
FT                   /db_xref="GOA:K4Q6F4"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:K4Q6F4"
FT                   /protein_id="CCH15223.1"
FT                   /translation="MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIRLTHGNQTMV
FT                   EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYKLGIISINNV
FT                   IRAVNHVLYDVLQTTVASEFTHNIQIKLY"
FT   CDS             complement(229..633)
FT                   /gene="C2"
FT                   /product="transcription activation protein (TrAP)"
FT                   /db_xref="GOA:K4Q674"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:K4Q674"
FT                   /protein_id="CCH15224.1"
FT                   /translation="MRSSSPSPIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT                   TCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQP
FT                   QEGVGDSQMFHELQGLDDLTPSDWSFLKRI"
FT   CDS             complement(533..1615)
FT                   /gene="C1"
FT                   /product="replication associated protein (Rep)"
FT                   /db_xref="GOA:K4Q5W6"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:K4Q5W6"
FT                   /protein_id="CCH15225.1"
FT                   /translation="MPVLNKFRINSKNYFLTYPKCSLTKEEALSQLQNLQTPTNKKFIK
FT                   ICRELHENGEPHLHVLIQFEGKFNCKNQRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYI
FT                   KKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNAGSKTEALRVITGVSSKDFVLQFH
FT                   NLNNNLERIFEEPPAPYVSPFLSSSFDQVPEELEEWASENVVEAAARPSRPISIVIEGE
FT                   SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT                   QSNTKYREQSIKGSSHIFLCNQVPIPHIKEYLDEDKNAHLKSWALKNAIFITLTNSLYS
FT                   GTNQSPASGGQEESNQETQD"
FT   CDS             complement(1165..1458)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:K4Q629"
FT                   /protein_id="CCH15226.1"
FT                   /translation="MGNLIYTCSSSSKANSTAKIRDSSTWYPQIDQHISIQTFRELNQA
FT                   PTSSPTSKRMETHWNGENSRSTEDLHVGVSSQPMTLTPQRLTQEVRQRLLGL"
XX
SQ   Sequence 1764 BP; 438 A; 385 C; 386 G; 555 T; 0 other;
     accggtgggc gcgaaaaaaa aaagtggtcc ccgctccacg tgaacatgtc gcgcgatgct        60
     gtccaatcag aaacgcgccg ctcttaatat aattttattt ggatattgtg cgtgaattca       120
     cttgccacgg ttgtttgcaa tacatcgtac aaaacatgat tgactgccct aattacattg       180
     ttaattgaaa ttatgcctaa tttatacaaa tatttcataa tctgcttcct aaatacgttt       240
     aagaaaagac cagtcggagg gcgtgagatc gtccaaaccc tgaagttcat gaaacatttg       300
     tgaatcccca actccttcct gaggttgtag ttgaatctta tctgcatctc taccattgtt       360
     tgattcccgt gcgttagacg aatctccttt atggttttga aatacagggg attgttgatt       420
     gtccagataa gtacgccatt ctctgtctga tgcgcagtga tgagttcccc tgtgcgtgaa       480
     tccattgtct ctgcacgtga aggctacgta taccgtgcaa ccacaaggga tgtcaatcct       540
     gcgtctcctg attgctctct tcttggcctc ccgatgctgg actttgattg gtacctgagt       600
     acagcgaatt ggtgagggtg atgaagatcg cattctttaa tgcccaagat ttgagatgcg       660
     cgttcttgtc ctcgtctaaa tattctttaa tatgaggaat tgggacctga ttgcagagga       720
     agatgtggga tgacccctta attgactgct cccggtattt tgtgttgctt tgccagtcct       780
     tttgcgcacc catgaactcc ttaaagtgtt tcagataatg cgggtcaaca tcatctatga       840
     cgttatacca tgcgtcatta ctgaacacct ttgggctcag atcaagatgg ccgcacagat       900
     aattgtgagg cccaagactt ctggcccata cggtctttcc tgttctgctt tccccttcaa       960
     tcactatact aatcggtcta cttggccgcg cagcggcctc aacgacgttc tccgacgccc      1020
     attcttcaag ttcttctgga acttggtcga acgaagaaga taaaaaagga gaaacatatg      1080
     gagctggagg ctcctcaaaa atcctctcta aattattatt taaattatga aattgtaaaa      1140
     caaaatcttt ggagctaact cccgttataa ccctaagagc ctctgtctta cttcctgcgt      1200
     taagcgctgc ggcgtaagcg tcattggctg actgctgacc cccacgtgca gatcttccgt      1260
     cgatctggaa ttctccccat tccagtgtgt ctccatcctt tttgatgtag gacttgacgt      1320
     cggagcttga tttagctccc tgaatgtttg gatggaaatg tgctgatcta tttggggata      1380
     ccaggtcgaa gaatctctga tttttgcagt tgaatttgcc ttcgaactgg atgagcacgt      1440
     gtaaatgagg ttccccattt tcgtggagct ctctgcagat tttgatgaat tttttatttg      1500
     ttggggtttg tagattttgg agttgggaaa gtgcttcttc ctttgttagt gaacattttg      1560
     gataagtgag gaaataattt ttggagttaa tgcggaattt gtttaaaaca ggcattttgg      1620
     tcaatgggca ccgattgacc gctctgtgaa cttcctctga tatattgggg tcctatatat      1680
     agttgggcac caaatggcat actcgtaaat atgctaaaaa tcccaaaaat tttgaacccc      1740
     catagcgccc accgtactaa tatt                                             1764
//