ID HE795106; SV 1; linear; genomic RNA; STD; VRL; 4314 BP. XX AC HE795106; XX DT 20-AUG-2012 (Rel. 113, Created) DT 05-NOV-2013 (Rel. 118, Last updated, Version 2) XX DE Shamonda virus Gn-Gc-NSm gene for M polyprotein, segment M, genomic RNA, DE isolate Ib An 5550 XX KW . XX OS Shamonda orthobunyavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus. XX RN [1] RP 1-4314 RA Hoeper D.; RT ; RL Submitted (19-MAR-2012) to the INSDC. RL Friedrich-Loeffler-Institute, Federal Resaerch Institute for Animal Health, RL Institue of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems RL 17493, GERMANY. XX RN [2] RX DOI; 10.3201/eid1810.120835. RX PUBMED; 23017842. RA Goller K.V., Hoper D., Schirrmeier H., Mettenleiter T.C., Beer M.; RT "Schmallenberg virus as possible ancestor of Shamonda virus"; RL Emerg. Infect. Dis. 18(10):1644-1646(2012). XX DR MD5; dcbca0342511d9058f6103652f4693c5. XX CC related sequences HE795105, HE795107. XX FH Key Location/Qualifiers FH FT source 1..4314 FT /organism="Shamonda orthobunyavirus" FT /segment="M" FT /isolate="Ib An 5550" FT /mol_type="genomic RNA" FT /db_xref="taxon:159150" FT CDS 18..4229 FT /gene="Gn-Gc-NSm" FT /product="M polyprotein" FT /db_xref="GOA:J4FBX9" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR005168" FT /db_xref="InterPro:IPR026400" FT /db_xref="UniProtKB/TrEMBL:J4FBX9" FT /protein_id="CCG93492.1" FT /translation="MKTILRIASILAQCAIMICLPLKNSIGGRCFTGGEPFKTINATSA FT PSEVCLRDDISMVKSIGIHSRGDDSDMITSSVTFYRLYYVKDWHDCNPISDHMGTFLVL FT NIEDSGSIKAENYACRTRCDISLNRDRGTIELTSTNLNHYSITGTTIASGWFKLKLEVQ FT LLSTCESISVTCGQKTLEFKACFRQHRKCINYFHGSILPEIMIEGICANLEVIILVFFI FT CLNTILAIIITNTYVIYALIPLIYPFYKLYGIIYNKCLKKCKNCKLAIHPFTICPTKCI FT CGMVYNSTEALYLHRQCNNCTGYKALTHARIACKKKIPNAIMAIFTTILIFSFLTPVSA FT ECYNLSELPQDYINMVNYIGMRSLLGYVVASLALLIAIVVLLQNKLAEQALKLYYVNCA FT FCGMIHHKRNLILEQGFTNQCLTCICHDKNIHKATKKCTIRYKWHITNNIRWLVFVSIL FT IIMPASIYPMQCLRSEEITNLEEASACISVYQNVTQKKQYHELIKSMSEQLSSDEVSIL FT LPQVVPSYINLIHEIENENDLHTAIVKEIILANLYPEIVKKYYSAAGPDTVKWRTILLN FT AGLHICSEHVVKMICRCALLQQECQSVTSDDGNQIETYYKSHKEEFYEDMASIFKVIYT FT AFPGLTKFLLVRSMSSKALQDAVPVLGKLKYYTRNNNHLNGIITFAEHIISKNVTSESR FT TINFEVRKLTGQQFTDKNVGSSGITTCQTPKLVTCTGKRLRSLQKEYIACSNNGVKMYL FT KEDKIYCRVGADLCVGDKYCLISFTPITDKENVDKLICYATEFRDQSNGMLKSSQSIRV FT KKLGSCALKGQLVNIAMSSENLLYKYDTIYHKKTPLVDEYCLSEKCTSDHYPYSSENLK FT NCVWTITNHKFQSQLHIDHQDIESFISGIKLSLHNDLITHNYKPTQNMPHIIPNYKSIS FT IAGSDNGNTITDAYVLFTIPLTTGLSQGFSVNTKTNKGLFDLVVYIKRATIKAEYTFEY FT ETGPTIGINAVHSEKCTGFCPREIPHATNWLTFTKEHTSSWGCEEWGCFAINTGCVYGS FT CQDIIKPEGKVYKKIGSEAIDAEICITDSSETFCTEITSYNPILGEKVQIEIMSQDSSL FT LPSNIFQKNNNIYKGDINPKGTFAKKCGSVQKVQDQIYGSGEPRFDYICHAASRKDVVV FT RKCYDNAYISCSTLESIQNMDLIKDESKWYLRQDTGLYGSVKVKLLLGDLNYKQDDTTT FT TRITAKAVCGGCTDCFDDVSCRVDVTSNNIASCSVESTCSPYINRLSLVEGSQQLHLKF FT KCKMEAIAFSICGIKAEIRSEIVKSHKILDLASLSQTSYIREYDKKCGTWLCRVYNEGI FT EGIIGPIWKEFNIWLKYGTVVVVLIFSVILIVKVINPLIKLIINTLKHNEQMYLLESKQ FT K" XX SQ Sequence 4314 BP; 1548 A; 731 C; 793 G; 1242 T; 0 other; agtagtgaac taccaaaatg aaaacaatcc ttcgtatcgc ctcaatttta gcacaatgtg 60 ctatcatgat atgcttacca ttgaagaact ccataggtgg gaggtgcttc acaggtggtg 120 agccatttaa aaccattaat gcaacatcag caccgagtga ggtctgcctc agagatgata 180 tatcgatggt taaatctatc ggaatacact cacgtgggga tgactcagat atgatcacat 240 ctagcgtcac gttctataga ctgtattatg ttaaagattg gcacgattgc aacccaatct 300 cagaccacat gggtactttc cttgttctaa atattgagga tagtggttct attaaagcag 360 aaaactatgc atgccgaaca agatgtgaca tttctttaaa cagggaccgt ggaactatag 420 aattaacctc tactaatctc aaccattatt ctattactgg gacaactatt gcatctgggt 480 ggttcaaact gaaattagag gtgcaattgc tttcgacatg tgaaagcatc agtgtaacct 540 gcggtcaaaa aacattggaa ttcaaggcat gtttcagaca acatcgtaag tgtatcaatt 600 atttccatgg ctctatacta cccgagataa tgattgaagg aatatgtgca aacctggaag 660 tgataatatt ggtcttcttt atatgcttaa atacaatact agctataata attaccaata 720 catatgtgat atatgcttta atcccactaa tatacccatt ttataaatta tatggaataa 780 tatacaataa gtgcttgaaa aagtgcaaaa attgtaagct tgctatacac ccttttacta 840 tttgccctac aaaatgtatt tgcggtatgg tttataatag tacagaagct ctgtatctac 900 atagacaatg caataattgt acagggtata aagcactaac ccatgcacgt attgcatgca 960 aaaaaaagat tcccaatgca atcatggcaa tatttactac cattttaata tttagctttt 1020 taacacctgt ttctgctgaa tgttacaatc tcagcgagtt accacaggat tatatcaata 1080 tggtcaatta catcggaatg cgatcgttgc ttggatatgt cgtagcatct ctcgctctgc 1140 taatagcgat agtggtgttg cttcagaaca aattagctga gcaagctttg aagctgtatt 1200 atgtcaactg tgcattctgt gggatgatcc atcataaaag aaatctcata ctagaacaag 1260 gctttacaaa tcaatgtcta acatgtattt gccacgacaa aaacatacat aaagccacaa 1320 aaaagtgtac tattagatac aaatggcaca tcacaaacaa tattagatgg cttgtttttg 1380 tttccatact cataataatg ccagcaagca tttacccaat gcaatgctta agatctgaag 1440 aaataacaaa tctagaagag gcttcagctt gcatatctgt ttatcaaaat gtaacacaaa 1500 aaaagcaata tcacgagttg attaagtcta tgagtgaaca actaagctca gatgaagtct 1560 ctatattgct gccacaggtt gtcccatctt atattaactt aatacacgag atagaaaatg 1620 aaaatgatct acatacagct atagtaaaag agataatctt agcaaattta tacccagaaa 1680 tagtaaaaaa atactatagt gcagcaggac ctgacactgt taaatggcgt acaatacttc 1740 ttaatgctgg actccacatc tgttcagaac atgttgttaa aatgatatgt agatgtgctt 1800 tattacaaca ggaatgtcaa tcagtcacaa gcgatgatgg aaatcaaatt gagacttact 1860 ataaatcaca taaagaagaa ttttatgaag atatggcttc aattttcaaa gttatataca 1920 ctgcatttcc tggtctcact aaattcttac ttgtcagatc aatgtctagt aaagcattgc 1980 aagatgcagt cccagtactt gggaaattga aatattacac gaggaacaac aatcatctaa 2040 acggtataat tacattcgca gaacatataa tatcgaagaa tgtgacaagc gaaagtagga 2100 ccattaactt tgaggtacgt aagttgactg gtcagcaatt cactgataaa aatgtcggct 2160 ccagtggtat cacgacatgt caaacaccca agttagttac atgcacaggg aaaagattga 2220 gatcattgca aaaggaatac atagcatgtt caaacaatgg ggttaaaatg tatctaaagg 2280 aagacaaaat ctattgcaga gtaggagcag acctgtgtgt aggtgacaaa tattgtctta 2340 taagttttac accgattact gacaaggaaa atgtagataa attaatatgt tatgcaacag 2400 aatttcggga ccagtcaaat ggtatgctaa aaagttcaca atcaattaga gtaaaaaaac 2460 taggcagctg tgcacttaaa ggccaattag tcaacatagc gatgtcatca gagaatttac 2520 tgtataagta tgatacaatc tatcataaaa aaacaccact tgtggacgag tactgcttat 2580 cagagaagtg tactagtgat cattatcctt atagtagtga aaaccttaaa aattgtgtgt 2640 ggactataac gaaccacaaa tttcagagtc aattgcatat agaccatcaa gatatagaat 2700 ctttcatatc aggtatcaaa ctatcattac ataatgactt aattactcac aactacaaac 2760 caacacaaaa tatgccacac ataattccta attataagtc tatatccata gctggaagcg 2820 ataatggaaa tacaataaca gatgcttatg tccttttcac tataccgctc accactggcc 2880 tctctcaagg ttttagtgta aatacaaaaa caaataaagg cttatttgat ttagtagtct 2940 atataaagag agccactata aaagctgaat atacttttga gtatgaaacc gggccgacta 3000 tcggcataaa tgctgtccat tctgaaaaat gcacaggatt ttgcccaaga gagataccgc 3060 atgctacaaa ctggttaaca tttacaaaag aacatactag ttcatggggc tgcgaagaat 3120 gggggtgctt tgctataaat actggctgcg tatatggatc atgtcaagat ataataaaac 3180 cagaaggcaa agtatataag aaaataggct ctgaagcaat tgatgcagaa atatgtataa 3240 ctgacagtag tgaaacattt tgtacagaga taacctctta taacccaata ttaggtgaaa 3300 aagtacaaat tgaaataatg tctcaagatt caagcctatt gccatctaat atatttcaaa 3360 aaaacaataa tatttacaaa ggagatataa accctaaagg cacttttgca aaaaaatgcg 3420 gatctgtgca gaaagtgcaa gatcagatat atggttctgg ggagccacga tttgattata 3480 tatgtcatgc tgctagtaga aaggatgtag tagtgcgcaa gtgttacgat aatgcatata 3540 tctcttgtag cacattggaa tcgatccaaa atatggatct aatcaaagat gaatctaagt 3600 ggtatttaag acaagatact ggtttatatg gttcagttaa agtaaagtta ctgctggggg 3660 atctaaatta taagcaagat gatacaacta ccacaaggat aacagcgaag gctgtatgtg 3720 gcggttgcac agactgcttt gatgatgtat catgccgagt tgatgtcacg tctaataaca 3780 ttgcctcatg ctcagtagag agtacatgct cgccatatat aaataggttg tcattggtag 3840 aaggctccca gcaacttcat ttaaagttca aatgcaaaat ggaagctata gcattttcta 3900 tatgcggcat taaagcagag attagatcag agatagtgaa aagccataag atactggact 3960 tggcatcact gagccagaca tcgtacatta gagaatatga taaaaaatgc ggaacatggc 4020 tatgtcgtgt ttacaacgag ggtattgagg gaatcatagg gccaatatgg aaagaattta 4080 atatatggct caagtatggt actgtagttg ttgtattaat attctctgtt attttaatag 4140 tgaaagtgat aaatccgtta atcaaactaa taattaacac cttaaagcac aatgaacaaa 4200 tgtacttact tgagtctaag caaaaataaa ctcatttaac tttatatttt cattaggggt 4260 tgggtggtgg gttatatgca gcttgaagga ttttcatttt ggtagaacac cact 4314 //