ID HE795105; SV 1; linear; genomic RNA; STD; VRL; 6863 BP. XX AC HE795105; XX DT 20-AUG-2012 (Rel. 113, Created) DT 05-NOV-2013 (Rel. 118, Last updated, Version 2) XX DE Shamonda virus RdRp gene for RNA-dependent RNA polymerase, segment L, DE genomic RNA, isolate Ib An 5550 XX KW . XX OS Shamonda orthobunyavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus. XX RN [1] RP 1-6863 RA Hoeper D.; RT ; RL Submitted (19-MAR-2012) to the INSDC. RL Friedrich-Loeffler-Institute, Federal Resaerch Institute for Animal Health, RL Institue of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems RL 17493, GERMANY. XX RN [2] RX DOI; 10.3201/eid1810.120835. RX PUBMED; 23017842. RA Goller K.V., Hoper D., Schirrmeier H., Mettenleiter T.C., Beer M.; RT "Schmallenberg virus as possible ancestor of Shamonda virus"; RL Emerg. Infect. Dis. 18(10):1644-1646(2012). XX DR MD5; c3ea32001a024bb3f499099230649338. DR EuropePMC; PMC4507351; 26186514. XX CC related sequences HE795106, HE795107. XX FH Key Location/Qualifiers FH FT source 1..6863 FT /organism="Shamonda orthobunyavirus" FT /segment="L" FT /isolate="Ib An 5550" FT /mol_type="genomic RNA" FT /db_xref="taxon:159150" FT CDS 20..6784 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:J4FCT8" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:J4FCT8" FT /protein_id="CCG93491.1" FT /translation="METYKINIFRDRINQCRSAEEAKDIVADLLMARHDYFGREVCYYL FT DIEFRQDVPAYDILLEFLPAGTAFNIRNCTPDNFIIHNGKLYVIDYKVSTDHAYGQKTY FT EKYTQIFGDALSELPFDFEVVIIRADPLRDTIHVNSNQFLEIFGPLNINLDFTWFFNLR FT SLIYEKYKDDDRFLEIVNQGEFTMTGPWIDEDTPELYSHPVFLEFYDSLDEMAKLTFHE FT SMTFDATRGEKWNQNLQKVINRYGNDYNVFVKDAAAGIFRCEGNYPKPNHDEITIGWNQ FT MVQRVSTERNLTQDVSKQKPSIHFIWGQPDEASNATTPKLIKIAKALQNISGESTYIGA FT FRALGMLMDFSENTALYEAHTSKLKSMARQTSKRIDTKLEPIKIGTATIYWEQQFKLDT FT EIMNTKDKSHLLKDFLGIGGHVQFSKKTIDDLDTDKPTILDFNKKEVIDFCKFQYENVK FT KILSEDNNLERIGCYLEEYGANIASCSKDTWNQINRIGKSNYWACIKDFSVLMKNMLAV FT SQYNRHNTFRVVCCANNNLFGFVMPSSDIKAKRSTLVYFLAVLHSTPQNVMHHGALHAT FT FKTGSKYLSISKGIRLDKERCQRIVSSPGLFMLTTLMFTGDNPTLNLTDVMNFTFHTSL FT SITKAMLSLTEPSRYMIMNSLAISSHVRDYIAEKFGPYTKTSFSVVMANLIKRGCYMAY FT NQRDKVDMRNICLTDYEITQKGVRDNRDLSSIWFEGYVSLKEYINQIYLPFYFNSKGLH FT EKHHVMIDLAKTILDIERDQRLNIPGIWSTTPRKQTANLNITIYAVAKNLIMDTARHNY FT IRSRIENTNNLNRSICTISTFTSSKSCIKVGDFEKEKSSAIKKAADCMSKEIKKYTIAN FT PEFVDEELMNATIRHSRYEDLKKAIPNYIDIMSTKVFDSLYQKITRKEINDKPTVYHIL FT SAMKNHTDFKFTFFNKGQKTAKDREIFVGEFEAKMCLYLVERISKERCKLNPDEMISEP FT GDSKLKKLEELAESEIRFTAATMKQIKERYLAEMGEASHMITYKPHSVKIEINADMSKW FT SAQDVLFKYFWLFALDPALYLQEKERILYFLCNYMQKKLVLPDEMLCSILDQRIKHEDD FT IIYEMTNGLSQNWVNIKRNWLQGNLNYTSSYLHSCSMNVYKDILKRAATLLEGEVLVNS FT MVHSDDNHTSIVMIQDKLDDDIIIEFSAKLFEKICLTFGNQANMKKTYITNFIKEFVSL FT FNIYGEPFSVYGRFILTSVGDCAFLGPYEDVASRLSATQTAIKHGAPPSLAWTAIALTQ FT WITHSTYNMLPGQINDPTSVLPSHDRFELPIELCGLINSELPTIAIAGLEADNLSYLVR FT LSKRMSPIHLCREPIQHQYENIHTWDISRLTQCDIFRLKLLRYMTLDSTMSSDDGMGET FT SEMRSRSLLTPRKFTTASSLSRLHSYADYQKTIQDQQKVEELFEYFIANPQLLVTKGET FT CEEFCMSVLFRYNSRKFKESLSIQNPAQLFIEQVLFANKPMIDYTSIHDRLFGIQDDPN FT INDTTCIIGKKTFVETYQQIKADVEKFTLDVEDIKTIYSFCIMNDPILVACANNLLISI FT QGVEMQRLGMTCCYMPEIKSLKVIYHSPALVLRAYVTDNYEQKGMEPDEMRRDIYHLEE FT FIEKTKLRANMQGRIANNEVKLMKRDLKFEVQELTKFYQICYEYVKSTEHKIKIFILPK FT KAYTPIDFCSLVTGNLISDNKWMVVHYLKQITVPAKKAQIATSIDLEIQIAYECFRLIT FT HFADMFLNDDSKKAYINAIISTYTYKDVQVSNLYKKIKSSRLRSKIIPLLYHLGDLQQV FT DVDRFDAEKAEEQITWNNWQTSREFTTGPIDLSIKGYGRSIRIIGEDNKLTAAEMQLSR FT VRSDIVSRHGQALLNKPHGLKLEKMEPVTDLNPKLWYIAYQLREKKRYHYGVFSTSYIE FT EHNSRIEASRIRKTNKWIPVCPIAISKQSSDGKPNLAKIPMLNIGEIKFTKLQIAVDDH FT AMIRKAPFSKMVFFDGPPIQSGGIDIGKLMKNQNILNLRLDNIQSITLLDLCRIFSCRG FT SKVDQDAFEFLSDEPLDEDVIDELDSSPALVVSYTKKSTKSNSFKNVIVRALIRECDIF FT EDIMDITDDGFTSDSNLEVLENLTWILNMLATNQWSTELLACIHMCLYRNEMDHIYHNF FT QVPEIFVDNPISLNVKWDEVVMFLNVLRDRDYKIEPWVSILDHSLTKAIEYAYKKMDEE FT RKQKSTGINKFLKGKKMGGRSKFDFQ" XX SQ Sequence 6863 BP; 2451 A; 1133 C; 1304 G; 1975 T; 0 other; gcccctaatt acaatcacta tggagacata caagatcaat atttttagag acaggatcaa 60 ccagtgtcga agtgctgaag aagccaaaga cattgttgct gatcttctta tggctagaca 120 tgactatttt ggtagagagg tatgttatta cctggatatc gagttccggc aggacgttcc 180 agcttatgac atacttcttg aatttctgcc agccggcact gcttttaaca tccgcaattg 240 tacgccagac aattttatca ttcataatgg caaactttat gtcattgatt acaaggtatc 300 aactgatcat gcatatggcc aaaaaactta tgaaaaatac acccaaatct ttggagacgc 360 attgtcagaa ttgccgtttg attttgaggt tgtgatcatc cgtgctgacc ctttgcgaga 420 tactattcat gtcaattcaa atcaattctt ggaaatattt gggccgctca acataaacct 480 tgattttact tggttcttca acttacgatc cctaatatat gaaaaatata aggatgatga 540 cagattcctt gaaattgtga atcaaggtga attcacaatg actggaccct ggatcgatga 600 ggataccccg gagctttatt cgcaccctgt ctttttagag ttctatgatt ctttagatga 660 gatggcaaag ctgacattcc atgaatctat gacatttgat gcaactcgcg gtgaaaagtg 720 gaatcaaaac ctgcaaaaag ttataaatag atatggcaat gattataacg tttttgtgaa 780 agacgccgct gcaggaatct ttagatgtga agggaattat cctaaaccaa atcatgatga 840 gattacaatc ggttggaatc aaatggttca gagagtgagt actgagcgaa atctgactca 900 ggatgtcagc aagcaaaagc catctatcca tttcatatgg ggccaacctg atgaagcatc 960 aaatgcaaca acaccaaaac taatcaaaat tgcaaaggca cttcaaaata tctctggtga 1020 gtctacatat ataggcgcat tcagagcact gggcatgctt atggactttt ctgagaacac 1080 agccttatat gaagcacata ctagcaagtt gaaaagtatg gcaagacaga catcaaagag 1140 aattgatact aaactggagc caataaaaat aggcactgca acaatttatt gggagcaaca 1200 atttaaattg gatactgaaa taatgaatac aaaagataaa tcacatttgc taaaggactt 1260 ccttggtata gggggtcatg tgcaattctc aaaaaagacc attgacgatt tagatactga 1320 caaacctact attttggatt tcaacaaaaa ggaagtcatt gatttctgca aattccagta 1380 tgaaaatgta aagaaaatat tatctgaaga taataatcta gagcgtatag ggtgttattt 1440 agaagaatat ggtgcaaaca ttgcatcatg ctcaaaggat acatggaatc agataaatcg 1500 aatagggaag tcaaattatt gggcttgtat taaagatttt tcagtcttga tgaaaaatat 1560 gctagcagtc tctcaatata ataggcacaa tacttttcgc gtagtgtgtt gtgcgaacaa 1620 taatctgttt gggtttgtga tgccttcttc tgatatcaaa gcaaaacgat ccacacttgt 1680 ttatttctta gctgtattgc attctacccc tcagaatgtg atgcatcatg gtgcattgca 1740 tgcaacattt aaaacaggtt caaaatacct tagtatctct aagggaatac gattggataa 1800 agaaagatgt cagcgtatag ttagttcacc aggacttttt atgttgacta cattaatgtt 1860 tacaggagac aatccaacac tcaatttgac tgatgtcatg aattttacat tccacacttc 1920 cctgtctata actaaggcta tgctgtcact tacagaacca tcaaggtata tgataatgaa 1980 ttcattagcc atatccagcc atgttagaga ttacatagca gaaaaatttg gcccttatac 2040 aaagaccagt ttctctgtgg taatggcaaa cttgattaaa agaggatgtt atatggcata 2100 taatcaaaga gataaagtgg acatgagaaa tatctgccta actgattatg aaataaccca 2160 aaaaggtgtg agggataaca gagatctatc atcgatctgg tttgaaggct atgtatcatt 2220 aaaggaatat attaaccaga tatatctgcc gttttacttt aattcaaaag gtttgcatga 2280 aaagcatcat gttatgatag atctggctaa gacaatttta gatatagaaa gggatcagag 2340 gttaaatatc ccaggaatat ggtctacaac acctagaaag cagactgcaa atttaaatat 2400 aactatttat gcagttgcaa aaaatctaat aatggacact gctagacata attatatcag 2460 gtcacggata gaaaacacaa acaacttaaa tagatcgata tgcactattt ctacattcac 2520 cagctccaaa tcatgtatta aggtaggaga ctttgagaaa gaaaaaagct cagcaataaa 2580 aaaggctgca gattgtatgt caaaagaaat aaagaagtat accattgcaa acccagaatt 2640 tgttgatgaa gaattaatga atgcaactat aaggcattca cgctatgaag acttaaaaaa 2700 agcaatccca aattatattg atattatgtc aaccaaagta tttgactctc tataccagaa 2760 aataacaagg aaagagataa atgataaacc cactgtgtat cacatactct ctgctatgaa 2820 gaatcacaca gattttaagt tcacattctt taataaaggc caaaaaacag caaaggatag 2880 ggaaatattc gtaggcgaat ttgaggcaaa aatgtgcttg tatctagtgg aaaggatatc 2940 taaagaacgc tgcaagttga acccagatga gatgatcagc gaaccaggcg attctaaatt 3000 gaaaaaattg gaagagcttg cagaatctga aatacgattc acagcagcaa ctatgaaaca 3060 aatcaaagaa cgttacttag cagaaatggg agaagcaagc catatgatca catataaacc 3120 acattctgtt aagattgaaa tcaatgcaga catgtcaaaa tggagtgctc aggatgtttt 3180 attcaaatat ttctggttgt ttgcattgga ccctgcactt tatctgcaag aaaaagaaag 3240 gatattatac ttcctgtgca attatatgca aaaaaagcta gttttgcctg atgaaatgct 3300 ctgtagtatc cttgaccagc gtattaaaca tgaggatgat ataatatatg aaatgaccaa 3360 tggcttatca caaaattggg tcaatatcaa acgaaactgg ctgcaaggga atctcaatta 3420 tacaagtagc tacctgcatt catgttctat gaatgtttac aaggatattc taaagagggc 3480 agccacttta ctagaaggag aggtcttagt caattctatg gtccattctg atgacaatca 3540 tacttcaata gtgatgatcc aggacaaatt agatgatgac attattattg aattttctgc 3600 aaagctcttt gaaaaaatat gcctaacttt cggaaaccag gcaaatatga agaagacata 3660 cataacaaat ttcataaaag aatttgtttc actcttcaat atttacggcg agccattttc 3720 tgtttatggt cgctttattt tgacatctgt tggcgattgt gcttttcttg gaccatatga 3780 agatgttgcc agcaggttat ctgcaacaca gacagcaatc aaacatggag caccgccatc 3840 gcttgcatgg actgccattg cattaactca atggataaca catagtacat ataacatgct 3900 cccaggccaa atcaatgatc ctacttcagt tttacctagt catgataggt ttgagctgcc 3960 tatagaatta tgtggcttga taaattcaga attgcccact atagctatag caggtttgga 4020 agcagataat ctaagttatt tagttaggtt atcgaaaaga atgtctccta tacatctttg 4080 ccgtgaacca atccagcatc aatatgagaa tatacataca tgggatatta gcaggctgac 4140 gcaatgtgat atattcagac ttaagctttt aagatacatg acattagact caaccatgtc 4200 atctgatgac gggatgggcg aaactagcga gatgagatct aggtctcttt taacaccaag 4260 gaaattcact actgctagct cattgtctag attgcattca tatgctgatt accagaaaac 4320 aatacaagat caacagaaag ttgaagaatt atttgaatat tttatagcca atcctcaact 4380 attggtcaca aaaggtgaga cttgtgaaga gttttgtatg tctgtattgt tcaggtacaa 4440 cagtcgcaag ttcaaagaat cattgtctat tcagaatcca gctcagctct tcatagagca 4500 agtgttgttt gcaaataaac ctatgataga ctatacaagc attcatgata ggttatttgg 4560 tatacaagat gacccaaata taaatgatac tacatgtatt attggcaaga agacttttgt 4620 tgaaacatat cagcaaataa aagctgatgt agaaaagttt acacttgatg tagaagacat 4680 aaaaacaatt tacagcttct gtataatgaa tgaccctata ttggttgctt gtgcaaacaa 4740 cttgttaatt tcaatacagg gtgtagagat gcagcgattg ggtatgacat gctgttatat 4800 gccagagatt aaaagtctta aagtaattta tcatagtcct gctcttgtac tgcgtgctta 4860 tgtaacagat aactatgagc aaaaagggat ggagccagat gaaatgcgca gagacatata 4920 tcatttagaa gaatttatag aaaagactaa attaagggca aatatgcaag ggagaattgc 4980 aaacaatgag gttaaattaa tgaagcgaga tttgaaattt gaagtgcagg aactaactaa 5040 attctatcag atctgttatg aatatgtgaa atcgacagaa cacaaaatta aaatatttat 5100 tcttccaaaa aaagcttaca ctcccattga tttctgctca ttggtgacag gcaatctaat 5160 atcagacaat aaatggatgg ttgttcatta tttaaaacaa ataactgtcc cagcaaagaa 5220 agcacaaata gccacatcta tagatctgga gatacaaata gcctatgaat gtttcaggtt 5280 aattacacac tttgctgata tgtttctgaa tgatgattct aaaaaggctt atattaatgc 5340 gatcattagc acatacacat acaaggacgt tcaagtatcc aatctctaca agaaaatcaa 5400 aagttcaagg ttacgctcaa aaatcatacc attattatat cacttgggcg acttgcaaca 5460 agtggatgtt gacagatttg atgcagaaaa agcagaagag cagatcacgt ggaataactg 5520 gcaaacatca cgagaattta ctactggccc gattgatcta tcaatcaaag gttatggacg 5580 gtcaataagg atcataggtg aagacaacaa gcttacagct gcagaaatgc agttgtcaag 5640 agtgaggagt gacattgtat caaggcatgg acaagccttg ttgaacaaac cccacgggct 5700 gaaattagag aaaatggaac cagtgactga tctaaaccca aaattatggt atattgcata 5760 ccaattacgc gagaaaaagc ggtatcacta tggggtcttt agtacatctt acatagaaga 5820 gcacaactca aggatagagg cgtctcggat acgtaagacc aataaatgga taccagtttg 5880 ccctattgct atatcaaagc aatcgtctga tgggaagcct aatcttgcga agatccctat 5940 gttgaatatt ggggagataa aatttacaaa attgcagatt gcagtagatg accatgcaat 6000 gattaggaag gccccattca gtaagatggt tttctttgat ggcccaccta tacaaagtgg 6060 tggcattgat attggaaagc ttatgaagaa tcaaaatatt ctcaatctaa gattagataa 6120 tatacagagt ataacgttgt tagacttgtg ccgtatattt tcatgtcgag gatctaaagt 6180 ggatcaagat gcatttgaat ttttatctga tgaaccttta gacgaagatg ttattgatga 6240 attagacagc tcacctgcat tagtagtatc ttacacaaag aaatcaacca agtccaatag 6300 ttttaaaaat gttatagtta gagcattgat aagagaatgc gatatatttg aagatataat 6360 ggatataaca gacgatggat ttacatctga tagtaatcta gaagtactag aaaacttaac 6420 atggattttg aatatgctgg caacaaatca atggtctaca gaattattag catgtataca 6480 catgtgctta tatcgtaatg agatggacca tatctatcat aattttcaag ttccagaaat 6540 atttgtggac aatccaattt cattaaatgt aaaatgggat gaagtagtca tgtttttaaa 6600 tgtactgcga gacagggatt ataaaattga accatgggta tctatactag atcattcctt 6660 aactaaggct atagaatatg cttacaagaa gatggatgag gagaggaagc aaaaatcaac 6720 aggcattaat aaattcttaa agggtaaaaa gatgggtggc agatcaaaat ttgatttcca 6780 atagcttgac tctaaatatt gcataatctt tgccccaaat ctgtattata taaataattt 6840 taaagtagtt tcatgtaatt agg 6863 //