ID HE793685; SV 1; linear; genomic RNA; STD; VRL; 3392 BP. XX AC HE793685; XX DT 16-APR-2012 (Rel. 112, Created) DT 23-JUN-2014 (Rel. 121, Last updated, Version 2) XX DE Cucumber mosaic virus ORF1 gene for helicase, segment RNA1, genomic RNA, DE strain R XX KW complete viral segment. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3392 RA Jacquemond M.; RT ; RL Submitted (16-MAR-2012) to the INSDC. RL INRA, Station de Pathologie Vegetale, Domaine Saint Maurice, BP 9484143 RL Montfavet Cedex, FRANCE. XX RN [2] RX DOI; 10.1094/MPMI-02-13-0057-R. RX PUBMED; 23530600. RA Morroni M., Jacquemond M., Tepfer M.; RT "Deep sequencing of recombinant virus populations in transgenic and RT nontransgenic plants infected with Cucumber mosaic virus"; RL Mol. Plant Microbe Interact. 26(7):801-811(2013). XX DR MD5; e207bfb54685a0d862b29977d7dc7636. XX CC related sequence HE793686. XX FH Key Location/Qualifiers FH FT source 1..3392 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Ranunculus asiaticus" FT /strain="R" FT /mol_type="genomic RNA" FT /country="France" FT /collection_date="1969" FT /db_xref="taxon:12305" FT CDS 97..3075 FT /gene="ORF1" FT /product="helicase" FT /db_xref="GOA:I0JV68" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I0JV68" FT /protein_id="CCG85335.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMSMRKVILNDPQQFDGRQ FT PDFCTKSAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCLAAKLNSSVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVVKTLFPTLRPREEKEFLVKLSTFVTFNEECSFDGGKEWDVISSAAFVAAQ FT AVADGTILAEEKAKKLADRLAVPVEEVSAIPEVSPTPVDQGTACGLETETSELDSLSAQ FT TRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNSLESNLKFVFDT FT YFSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHDL FT FSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKST FT DSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQ FT IAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRTKYSRWV FT SQSKVRKSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIKT FT VHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIAACI FT PLV" XX SQ Sequence 3392 BP; 861 A; 734 C; 779 G; 1018 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctcct ctgtaaaact accctttgaa 60 ttcttcttct cgttttattc tcagtttaaa attcctatgg caacgtcctc attcaacatc 120 aatgaactgg tagcctccca cggcgataaa ggactacttg cgacagccct cgttgataag 180 acagctcatg aacagctgga ggagcaactt caacatcaac gtagaggcct taaggtctac 240 atccgtaatg ttttggatgt aaaggactcc gaagtcattc ggactcggta tggtggtaag 300 tacgacctcc atctcaccca gcaggaatta gctccccatg gcctcgctgg tgccctccgc 360 ttgtgtgaaa ctctcgattg tctagacttt ttccctcgtt caggtctgcg gcaggacctc 420 gtcttagact tcggaggaag ttgggtcaca cactatcttc gcggacataa cgtacattgc 480 tgctccccat gtttgggtat tcgtgacaag atgcgtcaca ctgaaagatt gatgagcatg 540 cgcaaggtca ttttaaacga tccacaacag tttgatggcc gccagccgga cttttgcact 600 aagtctgcag ctgaatgcaa agttcaagcc cactttgcta tttctataca cggaggatat 660 gatatgggct ttagaggttt atgtgaggca atgaacgctc acggaactac gattttgaaa 720 gggacgatga tgttcgacgg cgctatgatg tttgacgacc aaggctttat tcctgaactt 780 aaatgtcagt ggcgaaaaat taaatccgcc ttttctgagg aggaggatgc cacttgttta 840 gcagctaaac tcaattctag tgttttttca cgcgtgcgaa atgggaaaac cttaatcgca 900 tttgacttcg ttgaggaatc cacgatgtct tatgttcacg attgggataa tataaaatcg 960 tttatgacag atcaaacgta ctctttcaat ggtatgacct atggaattga gcgttgtgtt 1020 atttacgctg gcgtgatgac ttacaagatt gttggcgtgc ctggtatgtg tccacccgaa 1080 ctcattcgac attgtatctg gttcccctct attaaggact atgttggtct taagattccc 1140 gcgtctgatg acttggttaa atggaaaaca gtccgtattt tactgtcaac attacgtgag 1200 actgaagaaa tagctatgcg ttgttataac gacaagaaga attggatgga tcaattcaag 1260 attattctcg gtgttttatc atcgaagtcc tccacgatcg ttatcaatgg tatgtctatg 1320 caatccggtg aacgtattga tctcaatgat tatcattaca tcggttttgc tattcttctc 1380 cacacgaaat taaaatacga acaacttggg aaaatgtacg atatgtggaa tgcttccttc 1440 atttggaagt ggtttgcgtc tatgtctaga ccattccgtg ttttcttttc cactgttgtt 1500 aagactttgt ttccgacttt gagaccgcgc gaggaaaagg agtttttggt caaactttcc 1560 actttcgtca cctttaacga ggagtgctct tttgacggag ggaaagaatg ggacgtgata 1620 tcatcagcgg ctttcgtagc cgctcaggct gttgcagatg gtactattct ggccgaggag 1680 aaagctaaga aattagctga tcgtctggcc gtgcctgttg aagaagtatc tgctattcct 1740 gaggtgtctc ctacacctgt tgatcagggc actgcttgtg gactggaaac agaaacatcg 1800 gaactggatt ctctgtctgc ccaaacacgt tcccccatca ctcggatcgc tgaaagagcg 1860 accgctatgc ttgaatattc agcttatgag aaacaattgc acgataccac cgtttcaaat 1920 cttcaacgaa tttggtgcat ggcaggtggc gacaacaaga gaaactcttt agagagtaat 1980 ttgaaatttg tgtttgacac ttatttttct gttgacgccc tggtgaatgt tcactttcct 2040 actgggaggt ggatgcaccc tgtgcctgag ggcgtggtat actctgttgg ttataatgag 2100 aagggtcttg gtcctaaact tgatagtgag ttgtacatag ttaatggtga ttgtgtaatt 2160 tcgaacagtc atgatttgtt ttcaatcact aaatctttgt tagctcccac cggaaccatc 2220 agccaagtcg atggtgtagc tgggtgcgga aaaaccactg ctataaaatc catgtttaat 2280 ccttccacag atataattgt cacagccaac aagaaatctg ctcaagatgt gcgttatgcg 2340 ctgtttaaat ctactgactc caaagaagct tgtgcttttg ttaggaccgc tgattccata 2400 ttactcaatg attgccctac ggtgtctcga gtgcttgtgg atgaagttgt tttgttgcac 2460 tttggtcagt tgtgcgctgt catgtcgaaa cttcatgctg tcagagcttt gtgtttcgga 2520 gactccgaac agatagcctt ctcctctcgt gacgcttcgt tcgacatgcg tttctctaag 2580 cttattccgg atgagaccag tgatgcggac acaactttcc gtagcccaca agatgtagta 2640 ccacttgtgc gtttgatggc tacgaaggct ctaccgaaag ggacccgtac gaaatactca 2700 agatgggtgt cccaatctaa agtgaggaag tctgttactt cgcgtgctgt tgctagtgta 2760 tctctagttg aactggaccc caccagattc tatattacga tgacgcaagc tgataaagcc 2820 tcactaatca ctagagctaa ggaactgaac ctacccaagg cattctacac tgataggata 2880 aagactgtcc atgaatctca aggtatttca gaagatcatg tgaccctggt taggttgaag 2940 agtactaaat gtgacctgtt caagaaattt tcttactgct tagttgcagt tactcgacac 3000 aaggtcacct tccgctatga gtactgtggt gtgttaggtg gggacctaat cgctgcttgt 3060 attccgttag tctgaacgcg gaatgtccga agacgttaaa ctacactctc tttattgcga 3120 gtgctgagtt ggtagttttt ctttaaacta tctgaagtcg ctaaatccag tattggttgc 3180 gaacgggttg tccatccagc ttacggctaa aatggtcagt catgccccaa aggcatgccg 3240 acatcttaca aggttgtcga ggtacccttg aaatcatctc ctagatttct tcggaagagc 3300 ttcgtgagaa gctcgtgcac ggtaatacac tgatattacc aagagtgcgg gtatcgcctg 3360 tggttttcca caggttctcc ataaggagac ca 3392 //