ID   HE793425; SV 1; circular; genomic DNA; STD; VRL; 2788 BP.
XX
AC   HE793425;
XX
DT   15-MAR-2013 (Rel. 116, Created)
DT   07-MAY-2013 (Rel. 116, Last updated, Version 2)
XX
DE   Okra yellow crinkle virus complete sequence, isolate Lik1:GR9
XX
KW   complete genome.
XX
OS   Okra yellow crinkle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2788
RA   Naeem Sattar M.N.;
RT   ;
RL   Submitted (15-MAR-2012) to the INSDC.
RL   Naeem Sattar M.N., Plant Biology and Forest Genetics, Swedish University of
RL   Agricultural Sciences, Box 7080, 750 07, SWEDEN.
XX
RN   [2]
RX   DOI; 10.1016/j.virusres.2013.03.010.
RX   PUBMED; 23535770.
RA   Leke W.N., Sattar M.N., Ngane E.B., Ngeve J.M., Kvarnheden A., Brown J.K.;
RT   "Molecular characterization of begomoviruses and DNA satellites associated
RT   with okra leaf curl disease in Cameroon";
RL   Virus Res. 174(1-2):116-125(2013).
XX
DR   MD5; a41b0120d92ca7ae87e77936d71e6723.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2788
FT                   /organism="Okra yellow crinkle virus"
FT                   /host="Abelmoschus esculentus"
FT                   /strain="Cameroon"
FT                   /isolate="Lik1:GR9"
FT                   /mol_type="genomic DNA"
FT                   /country="Cameroon:Likomba, Southwestern Cameroon"
FT                   /collection_date="Dec-2007"
FT                   /db_xref="taxon:401040"
FT   CDS             322..1098
FT                   /gene="V1"
FT                   /product="Coat protein"
FT                   /db_xref="GOA:M5BE84"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:M5BE84"
FT                   /protein_id="CCG85197.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRASVPTVLGTSKRRSW
FT                   TYRPMYRKPRMYRMYKSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTH
FT                   RTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDN
FT                   EPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKEAAIVRRFFKINHHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN"
FT   CDS             complement(1095..1499)
FT                   /gene="C3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:M5BEW4"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:M5BEW4"
FT                   /protein_id="CCG85198.1"
FT                   /translation="MDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHI
FT                   IDVQIRFNYNLRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINL
FT                   VIRAVAHVLYSVLLNTIDVTENHEIKFDIY"
FT   CDS             complement(1240..1647)
FT                   /gene="C2"
FT                   /product="transcriptional associated protein"
FT                   /db_xref="GOA:M5BE51"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:M5BE51"
FT                   /protein_id="CCG85199.1"
FT                   /translation="MQHSSPSTSHSTQLPIKVQHRIARKKVGRRRRIDLKCGCSYYLHI
FT                   NCANHGFSHRGTHHCSSDNEWRFYLGDTKSPIFQDHKTPNTPVQPAVSHNRCPNPVQLQ
FT                   PSEGIGDSQVFSQLQGLDDLTASDWSFLKGI"
FT   CDS             complement(1556..2629)
FT                   /gene="C1"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:M5BF70"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:M5BF70"
FT                   /protein_id="CCG85200.1"
FT                   /translation="MAPPKRFKINSKNYFLTFPKCSLSKEEALEQLQNLQTPTNKKFIK
FT                   ICKELHENGEPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT                   DKDGDTLEWGEFQVDGRSARGGCQTANDAEALNAGSVDAAMAIIREKLPKDFIFQYHNL
FT                   KSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWTAENVVGAAARPWRPQSIVVEGDSR
FT                   TGKTMWARSLGPHNYLCGHIDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEEDKNAALKAWAIKNATFITLNEPLYS
FT                   TTDQSPAPHSQEEGREA"
FT   CDS             complement(2221..2472)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:M5BE43"
FT                   /protein_id="CCG85201.1"
FT                   /translation="MGSLISTCSSSSKASTSAQISDSSTWSPRLGQHISIRTFRELSLA
FT                   RTSSPTSTRTATPSNGENSRSTDEVLGEAARLLTTQRH"
XX
SQ   Sequence 2788 BP; 750 A; 585 C; 628 G; 825 T; 0 other;
     accggtgggc gcgaaaaaaa aaagtggtcc ccgccccacg tggacatgtc gcgcgagtgc        60
     gaaatatgtc gcgcgatgcc gtccaatcat aataaagcct gaaagctatg ttaatgacat       120
     tttgtcctta aatacttcgg ccccaagtat taggtttgca acatgtggga tccattagtc       180
     aacgagttcc ccgaatctgt gcatgggttt cgttgtatgc tcgcaataaa atatctgcag       240
     gcttagagga tacgtacgag cccaacactt tggggtctga tttaattaga gatttaatat       300
     ctgtgattag agcgaagaat tatgtcgaag cgaccaggag atataattat ttccacgccc       360
     gtttcgaagg ttcgtcgaag gctgaacttc gacagccctt acacgagccg tgcaagtgtc       420
     cccactgtcc taggcacaag caaacgtcgg tcatggactt accggccaat gtacagaaag       480
     cccagaatgt accggatgta caaaagccct gacgttcctc gaggatgtga aggtccatgt       540
     aagatccaat catttgatca acgtgactca gtaacccata caggtaattc gagatgccta       600
     agtgatgtca caagaggtaa tgggcttact catcgtacag gtaaacgttt tgttatcaag       660
     tctgtttaca tattaggtaa ggtttggatg gacgagaatg ttaagaagtc caatcacaca       720
     aacacgtgta tgttctggtt agttagagat agacgtccat atggtaatag cccacaagat       780
     tttggacagg tatttaatat gtttgataac gagcccagca ctgcaacggt tatgaacgac       840
     aagcgtgacc gttatcaggt tttaaagagg tttcaagcaa ccgtcactgg aggaccgtct       900
     ggttgcaaag aggctgctat tgttaggcgt tttttcaaga taaaccatca tgtcacttat       960
     aatcatcagg aagctgccaa atatgagaac catacggaga atgctttact actgtatatg      1020
     gcatgtacac atgcgtcaaa tccagtatat gcgagtctta aaatacgaat gtatttctat      1080
     gattcagtca gcaattaata aatatcgaat tttatttcat gattttctgt tacatctatt      1140
     gtatttagta gtactgaata cagaacatgg gcaactgccc taatcactaa attaattgaa      1200
     attacaccca aattatttaa gtattttaga acctgtgttc taaataccct taagaaacga      1260
     ccagtctgag gccgtaaggt cgtccagacc ctgaagttga gaaaacactt gtgaatcccc      1320
     aatgccttcc gaaggttgta gttgaaccgg atttggacat ctattatgtg aaacggccgg      1380
     ttgaacgggt gtattaggtg tcttgtgatc ttgaaatata ggggatttgg tgtctcccag      1440
     ataaaaacgc cattcgttgt ctgacgagca gtgatgagtt cccctgtgcg agaatccatg      1500
     gttggcgcag tttatgtgta ggtagtatga gcatccacac ttgaggtcga ttcgtctacg      1560
     cctccctacc ttcttcctgg ctatgcggtg ctggactttg atcggtagtt gagtagagtg      1620
     gctcgttgag ggtgatgaat gttgcatttt taattgccca ggctttcaat gcagcatttt      1680
     tatcttcttc aagatattct ttataggaag ccgttggccc aggattgcag aggaagattg      1740
     ttgggatacc tcctttaatt tgaattggtt tcccgtactt cgtgttgctc tgccagtccc      1800
     tttgggcccc catgaattct ttaaagtgtt tgagataatg cgggtcaaca tcatctatga      1860
     cgttatacca tgcgtcattt gaatagaccc ttgggctaag atctatatga ccacataaat      1920
     aattatgtgg gcctaaggac ctagcccaca ttgtcttccc tgttctacta tcaccctcca      1980
     ccactatact ttgaggtctc cagggccgcg cagcggcacc aacgacattc tcagctgtcc      2040
     attcttctag ttcttcggga acattattaa aagaagaaga cgaaaaagga gaaacataaa      2100
     cttcgggcgg agcctgaaag attctatcta aatttgactt taaattatga tattggaaaa      2160
     taaaatcttt agggagtttt tccctaataa ttgccatagc agcatcaacg gaacctgcat      2220
     tcaatgcctc tgcgtcgtta gcagtctggc agcctcccct agcacttcgt ccgtcgacct      2280
     ggaattctcc ccattcgagg gtgtcgccgt ccttgtcgat gtaggacttg acgtccgagc      2340
     tagacttagc tccctgaatg ttcggatgga aatgtgctga cctagtcggg gagaccaggt      2400
     cgaagaatcg ctgatttgtg cactggtact tgccttcgaa ctggatgagc acgtggagat      2460
     gaggctcccc attttcgtgt agctccttgc agatctttat gaatttcttg tttgtaggtg      2520
     tttgtaggtt ttgaagctgt tctaatgctt cctctttgga taaggagcat tttgggaaag      2580
     taaggaaata gttttttgaa tttattttaa atcgtttggg aggagccatt ctggtcaatg      2640
     taccccgatt gactgctcct ctcaaacttc ccaggcaatc ggtgtaacgg ggtacaattt      2700
     atacttgtac cccaaatggc attctcgtaa ttttagaaag ttacttactt taattcaaat      2760
     tccccatagc gcccaccgtt ctaatatt                                         2788
//