Dbfetch
ID HE793424; SV 1; circular; genomic DNA; STD; VRL; 2795 BP. XX AC HE793424; XX DT 15-MAR-2013 (Rel. 116, Created) DT 07-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Okra yellow crinkle virus complete sequence, isolate Njo5:TOC15 XX KW complete genome. XX OS Okra yellow crinkle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2795 RA Naeem Sattar M.N.; RT ; RL Submitted (15-MAR-2012) to the INSDC. RL Naeem Sattar M.N., Plant Biology and Forest Genetics, Swedish University of RL Agricultural Sciences, Box 7080, 750 07, SWEDEN. XX RN [2] RX DOI; 10.1016/j.virusres.2013.03.010. RX PUBMED; 23535770. RA Leke W.N., Sattar M.N., Ngane E.B., Ngeve J.M., Kvarnheden A., Brown J.K.; RT "Molecular characterization of begomoviruses and DNA satellites associated RT with okra leaf curl disease in Cameroon"; RL Virus Res. 174(1-2):116-125(2013). XX DR MD5; 0c2dae560f70f2402001efa48694c03e. XX FH Key Location/Qualifiers FH FT source 1..2795 FT /organism="Okra yellow crinkle virus" FT /host="Abelmoschus esculentus" FT /strain="Cameroon" FT /isolate="Njo5:TOC15" FT /mol_type="genomic DNA" FT /country="Cameroon:Njomba, Southwestern Cameroon" FT /collection_date="Dec-2007" FT /db_xref="taxon:401040" FT CDS 164..514 FT /gene="V2" FT /product="Pre-coat protein" FT /db_xref="GOA:M5BE81" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M5BE81" FT /protein_id="CCG85192.1" FT /translation="MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDL FT ISVIRAKNYVEATRRYNYFHARFEGSSKAELRQPLHEPCKCPHCPRHKQTSVMDLPSNV FT QKAQNVPDVQKP" FT CDS 324..1100 FT /gene="V1" FT /product="Coat protein" FT /db_xref="GOA:M5BEW3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M5BEW3" FT /protein_id="CCG85193.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRASVPTVLGTSKRRSW FT TYRPMYRKPRMYRMYKSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTH FT RTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDN FT EPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKESAIVRRFFKINHHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN" FT CDS complement(1097..1648) FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:M5BE50" FT /db_xref="InterPro:IPR000657" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M5BE50" FT /protein_id="CCG85194.1" FT /translation="MQHSSPSASHSTQLPIKVQHRIAKKKVVRRRRIDLKCGCSYYLHI FT NCANHDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHIIDVQIRFNYN FT LRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINLVIRAVAHVLY FT SVLLNTIDETENHEIKFDIY" FT CDS complement(1557..2636) FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:M5BF69" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M5BF69" FT /protein_id="CCG85195.1" FT /translation="MAPPKRFKINSKNYFLTFPKCSLSKEEALEQLQNLQTPTNKKFIK FT ICKELHENGEPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNAGSVDAAMAIIREKLPKDFIFQYH FT NLKSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWAAENVVGAAARPWRPQSLVVEGD FT SRTGKTMWARSLGPHNYLCGHIDLSPRVCSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEEDKNAALKAWAIKNATFITLSEPL FT YSTTDQSPAPHSQEEGSEA" FT CDS complement(2222..2479) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M5BE42" FT /protein_id="CCG85196.1" FT /translation="MGSLISTCSSSSKASTSAQISDSSTWSPQLGQHISIRTFRELSLA FT RTSSPTSTRTATPSNGENSRSTDEVLGEAARLLTTLQQRH" XX SQ Sequence 2795 BP; 752 A; 584 C; 628 G; 831 T; 0 other; accggtgggc gcgaaaaaaa aaatgtggtc cccgccccac gtgaacatgt cgcgcaagtg 60 cgaaacatgt cgcgcgatgc cgtccaatca taataaagcc tgaaagctat gttaatgaca 120 ttttgtcctt aaatacttcg gccccaagta ttaggtttgc aacatgtggg atccattagt 180 caacgagttc cccgaatctg tgcatgggtt tcgttgtatg cttgcaataa aatatttgca 240 ggctttagag gatacgtacg agcccaacac tttggggtct gatttaatta gagatttaat 300 atctgtgatt agagcgaaga attatgtcga agcgaccagg agatataatt atttccacgc 360 ccgtttcgaa ggttcgtcga aggctgaact tcgacagccc ctacacgagc cgtgcaagtg 420 tccccactgt cctaggcaca agcaaacgtc ggtcatggac ttaccgtcca atgtacagaa 480 agcccagaat gtaccggatg tacaaaagcc ctgacgttcc tcgaggatgt gaaggtccat 540 gtaagatcca atcatttgat caacgtgact cagtaaccca tacaggtaat tcgagatgtc 600 taagtgatgt cacaagaggt aatgggctta ctcatcgtac aggtaaacgt tttgttatta 660 agtctgttta catattaggt aaggtttgga tggacgagaa tgttaagaag tccaatcaca 720 caaacacgtg tatgttctgg ttagttagag atagacgtcc atatggtaat agcccacaag 780 attttggaca ggtatttaat atgtttgata atgagcccag cactgcaacg gttatgaacg 840 acaagcgtga ccgttatcag gttttaaaga ggtttcaagc aaccgtcact ggaggaccgt 900 ctggttgcaa ggagtctgct attgttaggc gttttttcaa gataaaccat catgtcactt 960 acaatcatca ggaagctgcc aaatatgaga accatacgga gaatgcttta ctactgtata 1020 tggcatgtac ccatgcgtca aatccagtat atgcgagtct taaaatacga atgtatttct 1080 atgattcagt cagcaattaa taaatatcga attttatttc atgattttct gtttcatcta 1140 ttgtatttag tagtactgaa tacagaacat gggcaactgc cctaatcact aaattaattg 1200 aaattacacc caaattattt aagtatttta gaacctgtgt tctaaatacc cttaagaaac 1260 gaccagtctg aggccgtaag gtcgtccaga ccctgaagtt gagaaaacac ttgtgaatcc 1320 ccaatgcctt ccgaaggttg tagttgaacc ggatttggac atctattatg tgaaacggcc 1380 ggttgaacgg gtgtattagg tgtcttgtga tcttgaaata taggggattt ggtgtctccc 1440 agataaaaac gccattcgtt gtctgacgag cagtgatgag ttcccctgtg cgagaatcat 1500 ggttggcgca gtttatgtgt aggtagtatg agcatccaca cttgaggtcg attcgtctac 1560 gcctcactac cttcttcttg gctatgcggt gctggacttt gatcggtagt tgagtagagt 1620 ggctcgctga gggtgatgaa tgttgcattt ttaattgccc aggctttcaa tgcagcattt 1680 ttatcttctt caagatattc tttataggaa gccgttggcc caggattgca gaggaagatt 1740 gttgggatac ctcctttaat ttgaattggt ttcccgtact tcgtgttgct ctgccagtcc 1800 ctttgggccc ccatgaattc tttaaagtgt ttgagataat gcgggtcaac atcatctatg 1860 acgttatacc atgcgtcatt tgaacagacc cttgggctaa gatctatatg accacataaa 1920 taattatgtg ggcctaagga cctagcccac attgtcttcc ctgttctact atcaccctcc 1980 accactaaac tttgaggtct ccagggccgc gcagcggcac caacgacatt ctcagctgcc 2040 cattcttcta gttcttcggg aacattatta aaagaagaag acgaaaaagg agaaacataa 2100 acctcgggcg gagcctgaaa gattctatct aagtttgact ttaaattatg atattggaaa 2160 ataaaatctt tagggagttt ttccctaata attgccatag cagcatcaac ggaacctgca 2220 ttcaatgcct ctgctgcagc gtcgttagca gtctggcagc ctcccctagc acttcgtccg 2280 tcgacctgga attctcccca ttcgagggtg tcgccgtcct tgtcgatgta ggacttgacg 2340 tccgagctag acttagctcc ctgaatgttc ggatggaaat gtgctgacct agttggggag 2400 accaggtcga agaatcgctg atttgtgcac tggtacttgc cttcgaactg gatgagcacg 2460 tggagatgag gctccccatt ttcgtgtagc tccttgcaga tctttatgaa tttcttgttt 2520 gtaggtgttt gtaggttttg aagctgttct aatgcttcct ctttggataa ggagcatttt 2580 gggaaagtaa ggaaatagtt tttagaattt attttaaatc gtttgggagg agccattctg 2640 gtcaatgtac cccgattgac tgctcctctc aaacttccca ggtaatcggt gtaacggggt 2700 acaatttata cttgtacccc aaatggcatt ctcgtaattt tagaaagtta cttactttaa 2760 ttcaaatttc ccatagcgcc caccgttcta atatt 2795 //