ID HE650150; SV 1; linear; genomic RNA; STD; VRL; 3379 BP. XX AC HE650150; XX DT 07-FEB-2012 (Rel. 111, Created) DT 07-FEB-2012 (Rel. 111, Last updated, Version 1) XX DE Cucumber mosaic virus 1a gene for replicase, segment RNA1, genomic RNA, DE isolate Palampur XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3379 RA Kumari R.; RT ; RL Submitted (07-JAN-2012) to the INSDC. RL Kumari R., Institute of Himalayan Bioresource, Technology (CSIR), RL Floriculture Division, P.O. Box 6, Palampur, Himachal Pradesh 176061, RL INDIA. XX RN [2] RA Kumari R., Bhardwaj P., Singh L., Hallan V., Zaidi A.A.; RT "Molecular characterization of cucumber mosaic virus isolate Palampur"; RL Unpublished. XX DR MD5; ae3795dfe5c07dc3dc88c09726d87858. DR EuropePMC; PMC3650197; 24426254. XX FH Key Location/Qualifiers FH FT source 1..3379 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Cucumis sativus" FT /lab_host="Nicotiana glutinosa" FT /isolate="Palampur" FT /mol_type="genomic RNA" FT /country="India:Himachal Pradesh" FT /isolation_source="lab host leaf tissue" FT /collected_by="Reenu kumari" FT /identified_by="Reenu Kumari" FT /db_xref="taxon:12305" FT CDS 84..3062 FT /gene="1a" FT /product="replicase" FT /db_xref="GOA:H6SG35" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:H6SG35" FT /protein_id="CCF55378.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMSMRKVILNDPQQFDGRQ FT PDFCTKSAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT SFIPELKCQWRKIKSAFSEEEDATCLAAKLNSSVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCIWFPSMK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PYRVFFSTVVKTLFPTLRPREEKEFLVKLSTFVTFNEECSFDGGKEWDVISSAAFVAAQ FT AVADGTILAEEKAKKLADRLAVPVEEVSAIPEVSPTPVDQGTACGLETETSELDSLSAQ FT TRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNFLESNLKFVFDT FT YFSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHDL FT FSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKST FT DSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQ FT IAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRTKYSRWV FT SQSKVRKSVTSRAVASVSLVELDPTRFYITMTEADKASLITRAKELNLPKAFYTDRIKT FT VHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIATCI FT PLV" XX SQ Sequence 3379 BP; 861 A; 738 C; 782 G; 998 T; 0 other; agagcgtacg gttcaacccc tgcctcctct gtaaaactac cctttgaatt cttcttctcg 60 acttttctta gtttaaaatt cctatggcaa cgtcctcatt caacatcaat gaactggtag 120 cctcccacgg cgataaagga ctacttgcga cagccctcgt tgataagaca gctcatgaac 180 agctggagga gcaacttcaa catcaacgta gaggccttaa ggtctacatc cgtaatgttt 240 tggatgtaaa ggactccgaa gtcattcgga ctcggtatgg tggtaagtac gacctccatc 300 tcacccagca ggaattagct ccccatggcc tcgctggtgc cctccgcttg tgtgaaactc 360 tcgattgtct agactttttc cctcgttcag gtctgcggca ggacctcgtc ttagacttcg 420 gaggaagttg ggtcacacac tatcttcgcg gacacaacgt acattgctgc tccccatgtt 480 tgggtattcg tgacaagatg cgtcacactg aaagattgat gagcatgcgc aaggtcattt 540 taaacgatcc acaacagttt gatggccgcc agccggactt ttgcactaag tctgcagctg 600 aatgcaaagt tcaagcccac tttgctattt ctatacacgg aggatatgat atgggcttta 660 gaggtttatg tgaggcaatg aacgctcacg gaactacgat tttgaaaggg acgatgatgt 720 tcgacggcgc aatgatgttt gacgaccaaa gctttattcc tgaacttaaa tgtcagtggc 780 gaaaaattaa atccgccttt tctgaggagg aggatgccac ttgtttagca gctaaactca 840 attctagtgt tttttcacgc gtgcgaaatg ggaaaacctt aatcgcattt gacttcgttg 900 aggaatccac gatgtcttat gttcacgatt gggataatat aaaatcgttt atgacagatc 960 aaacgtactc tttcaatggt atgacctatg gaattgagcg ttgtgttatt tacgctggcg 1020 tgatgactta caagattgtt ggcgtgcctg gtatgtgccc acccgaactc attcgacatt 1080 gtatctggtt cccctctatg aaggactatg ttggtcttaa gattcccgcg tctgatgact 1140 tggttaaatg gaaaacagtc cgtattttac tgtcaacatt acgtgagact gaagaaatag 1200 ctatgcgttg ttataacgac aagaagaatt ggatggatca attcaagatt attctcggtg 1260 ttttatcatc gaagtcctcc acgatcgtta tcaatggtat gtctatgcaa tccggtgaac 1320 gtatcgatct caatgactat cattacatcg gttttgctat tcttctccac acgaaattaa 1380 aatacgaaca acttgggaaa atgtacgata tgtggaatgc ttccttcatt tggaagtggt 1440 ttgcgtctat gtctagacca taccgtgttt tcttttccac tgttgttaag actttgtttc 1500 cgactttgag accgcgcgag gaaaaggagt ttttggtcaa actttccact ttcgtcacct 1560 ttaacgagga gtgctctttt gacggaggga aagaatggga cgtgatatca tcagcggctt 1620 tcgtagccgc tcaggctgtt gcagatggta ctattctggc cgaggagaaa gctaagaaac 1680 tagctgatcg tctggccgtg cctgttgaag aagtatctgc tattcctgag gtgtctccta 1740 cacctgttga tcagggcact gcttgtggac tggaaacaga aacatcggaa ctggattctc 1800 tgtctgccca aacacgttcc cccatcacac ggatcgctga aagagcgacc gctatgcttg 1860 aatattcagc ttatgagaaa cagttgcacg ataccaccgt ttcaaatctt caacgaattt 1920 ggtgcatggc aggtggcgac aacaagagaa actttttaga gagtaatttg aaatttgtgt 1980 ttgacaccta tttttctgtt gacgccctgg tgaatgttca ctttcctact gggaggtgga 2040 tgcaccctgt gcctgagggc gtggtatact ctgttggtta taatgagaag ggtcttggtc 2100 ctaaacttga tagtgagttg tacatagtta atggtgattg tgtgatttcg aacagtcatg 2160 atttgttttc aatcactaaa tctttgttag ctcccaccgg aaccatcagc caagtcgatg 2220 gtgtagctgg gtgcggaaaa accactgcta taaaatccat gtttaatcct tccacagata 2280 taattgtcac agccaacaag aaatctgctc aagatgtgcg ttatgcgctg tttaaatcta 2340 ctgactccaa agaagcttgt gcttttgtta ggaccgctga ttccatatta ctcaatgatt 2400 gccctacggt gtctcgagtg cttgtggatg aagttgtttt gttgcacttt ggtcagttgt 2460 gcgctgtcat gtcgaaactt catgctgtca gagctttgtg cttcggagac tccgaacaga 2520 tagctttctc ctctcgtgac gcttcgttcg acatgcgttt ctctaagctt attccggatg 2580 agaccagtga tgcggacaca actttccgta gtccacaaga tgtagtacca cttgtgcgtt 2640 tgatggctac gaaggctcta ccgaaaggga cccgtacgaa atactcaaga tgggtgtccc 2700 aatctaaagt gaggaagtct gttacttcgc gtgctgttgc tagtgtatct ctagttgaac 2760 tggaccccac cagattctat attacgatga cggaagctga taaagcctca ctaatcacta 2820 gagctaagga actgaaccta cccaaggcat tctacactga taggataaag actgtccatg 2880 aatctcaagg tatttcagaa gatcatgtga ccctggttag gttgaagagt actaaatgtg 2940 acctgttcaa gaaattttcc tactgcttag ttgcagttac tcgacacaag gtcaccttcc 3000 gctatgagta ctgtggtgtg ttaggtgggg acctaatcgc tacttgtatt ccgttagtct 3060 gaacgcggaa ggtccgaaga cgttaaacta cactctcttt attgcgagtg ctgagttggt 3120 agttttgctt taaactatct gaagtcgcta aatccagtat tggttgcgaa cgggttgtcc 3180 atccagctta cggctaaaat ggtcagtcat gccccaaagg catgccgaca tcttacaagg 3240 ttgtcgaggt acccttgaaa tcatctccta gatttcttcg gaagagcttc gcgagaagct 3300 cgtgcacggt aatacactga tattaccaag agtgcgggta tcgcctgtgg ttttccacag 3360 gttctccata aggagacca 3379 //