ID   HE649914; SV 1; linear; genomic RNA; STD; VRL; 830 BP.
XX
AC   HE649914;
XX
DT   16-JAN-2012 (Rel. 111, Created)
DT   26-MAR-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Schmallenberg virus genes for nucleocapsid protein and non-structural
DE   protein, segment S, genomic RNA, isolate BH80/11-4
XX
KW   .
XX
OS   Schmallenberg virus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes;
OC   Bunyavirales; Peribunyaviridae; Orthobunyavirus;
OC   Schmallenberg orthobunyavirus.
XX
RN   [1]
RP   1-830
RA   Hoeper D.;
RT   ;
RL   Submitted (03-JAN-2012) to the INSDC.
RL   Friedrich-Loeffler-Institute, Federal Resaerch Institute for Animal Health,
RL   Institue of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems
RL   17493, GERMANY.
XX
RN   [2]
RC   this article is the first description of the virus including its
RC   full-length genome sequence
RX   DOI; 10.3201/eid1803.111905.
RX   PUBMED; 22376991.
RA   Hoffmann B., Scheuch M., Hoper D., Jungblut R., Holsteg M., Schirrmeier H.,
RA   Eschbaumer M., Goller K.V., Wernike K., Fischer M., Breithaupt A.,
RA   Mettenleiter T.C., Beer M.;
RT   "Novel orthobunyavirus in cattle, europe, 2011";
RL   Emerg. Infect. Dis. 18(3):469-472(2012).
XX
DR   MD5; 7a613aff7eee20d6c12d3628c10d7347.
DR   EuropePMC; PMC3309600; 22376991.
DR   EuropePMC; PMC3407049; 22848676.
DR   EuropePMC; PMC3542112; 23326235.
DR   EuropePMC; PMC3546048; 23335964.
DR   EuropePMC; PMC3675483; 23595147.
DR   EuropePMC; PMC3709688; 23255627.
DR   EuropePMC; PMC4042763; 24648561.
DR   EuropePMC; PMC4058894; 24982920.
DR   EuropePMC; PMC4228258; 24188175.
DR   EuropePMC; PMC4300748; 25410877.
DR   EuropePMC; PMC4619357; 26497392.
DR   EuropePMC; PMC5264630; 28083834.
XX
CC   related sequences HE649912, HE649913.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..830
FT                   /organism="Schmallenberg virus"
FT                   /segment="S"
FT                   /host="Bos taurus"
FT                   /isolate="BH80/11-4"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany:North Rhine-Westphalia, Schmallenberg"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:1133363"
FT   CDS             23..724
FT                   /transl_table=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:H2AM13"
FT                   /db_xref="InterPro:IPR001784"
FT                   /db_xref="PDB:3ZL9"
FT                   /db_xref="PDB:4IDU"
FT                   /db_xref="PDB:4IDX"
FT                   /db_xref="PDB:4JNG"
FT                   /db_xref="UniProtKB/Swiss-Prot:H2AM13"
FT                   /protein_id="CCF55031.1"
FT                   /translation="MSSQFIFEDVPQRNAATFNPEVGYVAFIGKYGQQLNFGVARVFFL
FT                   NQKKAKMVLHKTAQPSVDLTFGGVKFTVVNNHFPQYVSNPVPDNAITLHRMSGYLARWI
FT                   ADTCKASVLKLAEASAQIVMPLAEVKGCTWADGYTMYLGFAPGAEMFLDAFDFYPLVIE
FT                   MHRVLKDNMDVNFMKKVLRQRYGTMTAEEWMTQKITEIKAAFNSVGQLAWAKSGFSPAA
FT                   RTFLQQFGINI"
FT   CDS             48..323
FT                   /transl_table=1
FT                   /product="non-structural protein"
FT                   /db_xref="GOA:H2AM14"
FT                   /db_xref="InterPro:IPR000797"
FT                   /db_xref="UniProtKB/Swiss-Prot:H2AM14"
FT                   /protein_id="CCF55032.1"
FT                   /translation="MYHNGMQLHLTRRSGMWHLLVSMGNNSTSVLLESSSSTRRRPRWS
FT                   YIRRHNQVSILLLVGSNLQWLITIFPNMSQILCQTMPLHFTGCQDI"
XX
SQ   Sequence 830 BP; 239 A; 179 C; 171 G; 241 T; 0 other;
     ctccactatt aactacagaa atatgtcaag ccaattcatt tttgaagatg taccacaacg        60
     gaatgcagct acatttaacc cggaggtcgg gtatgtggca tttattggta agtatgggca       120
     acaactcaac ttcggtgttg ctagagtctt cttcctcaac cagaagaagg ccaagatggt       180
     cctacataag acggcacaac caagtgtcga tcttactttt ggtggggtca aatttacagt       240
     ggttaataac cattttcccc aatatgtctc aaatcctgtg ccagacaatg ccattacact       300
     tcacaggatg tcaggatatc tagcacgttg gattgctgat acatgcaagg ctagtgtcct       360
     caaactagct gaagctagtg ctcagattgt catgcccctt gctgaggtta agggatgcac       420
     ctgggccgat ggttatacaa tgtatcttgg atttgcacct ggggccgaaa tgttccttga       480
     tgcttttgac ttctatccac tagttattga aatgcatagg gtcctcaagg acaatatgga       540
     tgtaaatttt atgaaaaaag tcctccgcca acgctatgga acaatgactg ctgaagaatg       600
     gatgactcag aaaataacag aaataaaagc tgcttttaat tctgttggac agcttgcctg       660
     ggccaaatct ggattctctc ctgctgctag aaccttcttg cagcaattcg gtatcaacat       720
     ctaaacctct tcatcacaga tcttcaattt ccgtgcaata tgtctatgta ttgcacacca       780
     ttatactgca aggcttctgt taagatagtt aataagtgga gaacactact                  830
//